BAC Information

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BAC

Clone NameB6Ng01-299B06
Chromosome6 (Build37)
Map Location 34,695,124 - 34,832,941
singlet/doubletdoublet
Overlap geneCald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184
Downstream geneStra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299B06.bB6Ng01-299B06.g
ACCGA094019GA094020
length1,1671,047
definitionB6Ng01-299B06.b B6Ng01-299B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,831,781 - 34,832,941)(34,695,124 - 34,696,171)
sequence
gaattcatagccactatgcctcaagatctccatgccgagatccatgtcag
aaatgtgtgtcttccagcctccagattaggatcactggtgagccttccaa
ttctggattgtagttcattccaggtatagtcaagttgacaaccaggtata
gccactacacctactaagccttcttgctggcttgtccacgttgtttttgt
tcctgtttatatattgaaaaacacaaacaaaaacaaagcaagcaagcgaa
caaacatcctctccagtcagagctgctcagtttgattcaggttctgtacc
actgagagactgagtggtgggtggccttcacacttggatcttccaaagat
gagtgctgagccctgagcccaagaccacgtgtctggtgctgtgagttcct
ctccctccttcagtgctcatttgagagtgtttccctgacaatggtggtta
gtctgtgagacggaggggtcctctcagtgtctgatgcctctgcttgtcag
tcaacaaacagcttgggtttgaacagcagttgtgtgctaggcctggcacc
actctactgcggaatagaccaaggggttaaataatgcctgtgctggcctg
gagttcagatgcaagttagcactggaagtaagtgatagacagctaagccc
tgagcagttcccagagaacctgggtggggtccaagttctcaggaaaacct
agagggaggctgcagtctgtggactggaaagagaaggggctgggaacagg
ggagaggacactcctagggccccaggctgggcagaggcctgccagtacgg
gactctgtgtgggctgagatgggaaatgagaagcttcacacagacccaga
ggctgctcagtgagacctgggcttgcggtcagtaaaggctcctctttctg
cagagggcggcagtactgttctcatccccctgctgctggtagctgcatga
gctctcgggtggatctgtctctccttcagacaccctaaaacactagttac
aaggctagttttccccttaagcttgcggtacttgacatccgggagagctg
tctttgtgtctaatattggaaggaatagctgaatatgcatttatttttaa
aggcaatggcagcctttctccacctaaatatgggagccatagtccgaacc
ttgctctataaatcaga
gaattcactcattattctgatttgatccttgtcatagttgggatccacag
tgacacagattccgagatcaaggtttaatcacaaggagtctgtgaggtca
cctcagaaaacaacggttggggtgtaggtaagggagacacaggaggaaag
ttgttttctggcctaagtgtccactgtggagctctgggacataactccag
taagagccgtggctgtaggattagccttcaaaacagagaaaagccaaagt
atttatatgatgatgcacctctgattttgttgagtgacattagtattcag
aggccctacacaagttgaggagacacagtgtcctgagaaagaccaagagc
gaagacttggataggctcagttggaagcatagagtggtgacatctacggg
catgtgagctggatactgctggtgcctgctctggctgtggttggttctat
acggttaaccaacaagttgtctttgatgttccttctgtcatgcagtgtcc
ccgatgaagagtctaagccagcctcctcaaacactcaggtagaaggtgac
gaggaggctgccttactggagcgcctggctagacgagaagagagacgtca
aaaacgccttcaggaagccttagagcgtcagaaggagtttgatccgacca
taacagatggcagtctctcaggcccaagccgaagaatgcaaaatgactcc
gccgaaaatgagacagcagagggggaagaaaaaagagagagtcgctcagg
acggtatgaggtggaagaaacagaagtggtcatcaagtcctaccagaaga
acagctatcagatgctgaagacaaaagaaagaagaaaaggaagaggagga
gcaagagaagctgaagggagggagccttggcgaaaatcaggtagagaaga
tggtagaggagaaaacaccagaatccaagaggaggctgtgctgatggtat
tggaaaacgggcagtcagcgcagagagtccaaataagaaggggatggggg
aacagacatgggagggagatagcccgtcgaaaaaaagaatgggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34831781_34832941
seq2: B6Ng01-299B06.b_46_1212 (reverse)

seq1  TCTGA-TTATAGAGCAAG--TCTGACTAT-GCT-CCATATTTGGGTGGAG  45
      ||||| ||||||||||||  || |||||| ||| |||||||| |||||||
seq2  TCTGATTTATAGAGCAAGGTTCGGACTATGGCTCCCATATTTAGGTGGAG  50

seq1  AAAAGGCTGC--ATGCC-TTAAAATAAAATGCATATCCAGCTATTCCT--  90
       |||||||||   |||| ||||||  |||||||||| |||||||||||  
seq2  -AAAGGCTGCCATTGCCTTTAAAAATAAATGCATATTCAGCTATTCCTTC  99

seq1  CCATA-TAGACAACAAAGAACAGCTCTCCCGGATGTCAAGTACCGCAAGC  139
      | ||| ||||| |||||| |||||||||||||||||||||||||||||||
seq2  CAATATTAGAC-ACAAAG-ACAGCTCTCCCGGATGTCAAGTACCGCAAGC  147

seq1  CTTAAAGGGGAAAACTAGCCTTGTAACTAGTGTTTTAGGGTGTCCTGAAG  189
        | ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  --TTAAGGGGAAAACTAGCCTTGTAACTAGTGTTTTAGGGTGT-CTGAAG  194

seq1  GAGAGACAGATCCACCCGAGAGCTCATGCAGCTACCAGCAGCAGGGGGAT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGATCCACCCGAGAGCTCATGCAGCTACCAGCAGCAGGGGGAT  244

seq1  GAGAACAGTACTGCCGCCCTCTGCAGAAAGAGGAGCC-TTACTGACCGCA  288
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGAACAGTACTGCCGCCCTCTGCAGAAAGAGGAGCCTTTACTGACCGCA  294

seq1  AGCCCAGGTCTCACTGAGCAGCCTCTGGGTCTGTGTGAAGCTTCTCATTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGTCTCACTGAGCAGCCTCTGGGTCTGTGTGAAGCTTCTCATTT  344

seq1  CCCATCTCAGCCCACACAGAGTCCCCTACTGGCAGGCCTCTGCCCAGCCT  388
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCATCTCAGCCCACACAGAGTCCCGTACTGGCAGGCCTCTGCCCAGCCT  394

seq1  GGGGCCCTAGGAGTGTCCTCTCCCCTGTTCCCAGCCCCTTCTCTTTCCAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCCTAGGAGTGTCCTCTCCCCTGTTCCCAGCCCCTTCTCTTTCCAG  444

seq1  TCCACAGACTGCAGCCTCCCTCTAGGTTTTCCTGAGAACTTGGACCCCAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGACTGCAGCCTCCCTCTAGGTTTTCCTGAGAACTTGGACCCCAC  494

seq1  CCAGGTTCTCTGGGAACTGCTCAGGGCTTAGCTGTCTATCACTTACTTCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTCTCTGGGAACTGCTCAGGGCTTAGCTGTCTATCACTTACTTCC  544

seq1  AGTGCTAACTTGCATCTGAACTCCAGGCCAGCACAGGCATTATTTAACCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAACTTGCATCTGAACTCCAGGCCAGCACAGGCATTATTTAACCC  594

seq1  CTTGGTCTATTCCGCAGTAGAGTGGTGCCAGGCCTAGCACACAACTGCTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTATTCCGCAGTAGAGTGGTGCCAGGCCTAGCACACAACTGCTG  644

seq1  TTCAAACCCAAGCTGTTTGTTGACTGACAAGCAGAGGCATCAGACACTGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCCAAGCTGTTTGTTGACTGACAAGCAGAGGCATCAGACACTGA  694

seq1  GAGGACCCCTCCGTCTCACAGACTAACCACCATTGTCAGGGAAACACTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCCCTCCGTCTCACAGACTAACCACCATTGTCAGGGAAACACTCT  744

seq1  CAAATGAGCACTGAAGGAGGGAGAGGAACTCACAGCACCAGACACGTGGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGCACTGAAGGAGGGAGAGGAACTCACAGCACCAGACACGTGGT  794

seq1  CTTGGGCTCAGGGCTCAGCACTCATCTTTGGAAGATCCAAGTGTGAAGGC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTCAGGGCTCAGCACTCATCTTTGGAAGATCCAAGTGTGAAGGC  844

seq1  CACCCACCACTCAGTCTCTCAGTGGTACAGAACCTGAATCAAACTGAGCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCACTCAGTCTCTCAGTGGTACAGAACCTGAATCAAACTGAGCA  894

seq1  GCTCTGACTGGAGAGGATGTTTGTTCGCTTGCTTGCTTTGTTTTTGTTTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGACTGGAGAGGATGTTTGTTCGCTTGCTTGCTTTGTTTTTGTTTG  944

seq1  TGTTTTTCAATATATAAACAGGAACAAAAACAACGTGGACAAGCCAGCAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCAATATATAAACAGGAACAAAAACAACGTGGACAAGCCAGCAA  994

seq1  GAAGGCTTAGTAGGTGTAGTGGCTATACCTGGTTGTCAACTTGACTATAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTAGTAGGTGTAGTGGCTATACCTGGTTGTCAACTTGACTATAC  1044

seq1  CTGGAATGAACTACAATCCAGAATTGGAAGGCTCACCAGTGATCCTAATC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGAACTACAATCCAGAATTGGAAGGCTCACCAGTGATCCTAATC  1094

seq1  TGGAGGCTGGAAGACACACATTTCTGACATGGATCTCGGCATGGAGATCT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTGGAAGACACACATTTCTGACATGGATCTCGGCATGGAGATCT  1144

seq1  TGAGGCATAGTGGCTATGAATTC  1161
      |||||||||||||||||||||||
seq2  TGAGGCATAGTGGCTATGAATTC  1167

seq1: chr6_34695124_34696171
seq2: B6Ng01-299B06.g_68_1114

seq1  GAATTCACTCATTATTCTGATTTGATCCTTGTCATAGTTGGGATCCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCATTATTCTGATTTGATCCTTGTCATAGTTGGGATCCACAG  50

seq1  TGACACAGATTCCGAGATCAAGGTTTAATCACAAGGAGTCTGTGAGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGATTCCGAGATCAAGGTTTAATCACAAGGAGTCTGTGAGGTCA  100

seq1  CCTCAGAAAACAACGGTTGGGGTGTAGGTAAGGGAGACACAGGAGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAAACAACGGTTGGGGTGTAGGTAAGGGAGACACAGGAGGAAAG  150

seq1  TTGTTTTCTGGCCTAAGTGTCCACTGTGGAGCTCTGGGACATAACTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTGGCCTAAGTGTCCACTGTGGAGCTCTGGGACATAACTCCAG  200

seq1  TAAGAGCCGTGGCTGTAGGATTAGCCTTCAAAACAGAGAAAAGCCAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCCGTGGCTGTAGGATTAGCCTTCAAAACAGAGAAAAGCCAAAGT  250

seq1  ATTTATATGATGATGCACCTCTGATTTTGTTGAGTGACATTAGTATTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGATGATGCACCTCTGATTTTGTTGAGTGACATTAGTATTCAG  300

seq1  AGGCCCTACACAAGTTGAGGAGACACAGTGTCCTGAGAAAGACCAAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTACACAAGTTGAGGAGACACAGTGTCCTGAGAAAGACCAAGAGC  350

seq1  GAAGACTTGGATAGGCTCAGTTGGAAGCATAGAGTGGTGACATCTACGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTGGATAGGCTCAGTTGGAAGCATAGAGTGGTGACATCTACGGG  400

seq1  CATGTGAGCTGGATACTGCTGGTGCCTGCTCTGGCTGTGGTTGGTTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGCTGGATACTGCTGGTGCCTGCTCTGGCTGTGGTTGGTTCTAT  450

seq1  ACGGTTAACCAACAAGTTGTCTTTGATGTTCCTTCTGTCATGCAGTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTAACCAACAAGTTGTCTTTGATGTTCCTTCTGTCATGCAGTGTCC  500

seq1  CCGATGAAGAGTCTAAGCCAGCCTCCTCAAACACTCAGGTAGAAGGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGAAGAGTCTAAGCCAGCCTCCTCAAACACTCAGGTAGAAGGTGAC  550

seq1  GAGGAGGCTGCCTTACTGGAGCGCCTGGCTAGACGAGAAGAGAGACGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGCTGCCTTACTGGAGCGCCTGGCTAGACGAGAAGAGAGACGTCA  600

seq1  AAAACGCCTTCAGGAAGCCTTAGAGCGTCAGAAGGAGTTTGATCCGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGCCTTCAGGAAGCCTTAGAGCGTCAGAAGGAGTTTGATCCGACCA  650

seq1  TAACAGATGGCAGTCTCTCAGGCCCAAGCCGAAGAATGCAAAATGACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATGGCAGTCTCTCAGGCCCAAGCCGAAGAATGCAAAATGACTCC  700

seq1  GCCGAAAATGAGACAGCAGAGGGGGAAGAAAAAAGAGAGAGTCGCTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAAATGAGACAGCAGAGGGGGAAGAAAAAAGAGAGAGTCGCTCAGG  750

seq1  ACGGTATGAGGTGGAAGAAACAGAAGTGGTCATCAAGTCCTACCAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTATGAGGTGGAAGAAACAGAAGTGGTCATCAAGTCCTACCAGAAGA  800

seq1  ACAGCTATCAGGATGCTGAAGACAAAAAGAAAGAAGAAAAGGAAGAGGAG  850
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ACAGCTATCA-GATGCTGAAGAC-AAAAGAAAGAAGAAAAGGAAGAGGAG  848

seq1  GAGCAAGAGAAGCTGAAGGGAGGGAGCCTTGGCGAAAATCAGGTAGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGAGAAGCTGAAGGGAGGGAGCCTTGGCGAAAATCAGGTAGAGAA  898

seq1  GATGGTAGAGGAGAAAACACCAGAAATCCAAGAGGAGGCTGTGCTGATGG  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATGGTAGAGGAGAAAACACCAG-AATCCAAGAGGAGGCTGTGCTGATGG  947

seq1  TATTGGAAAACGGGCAGGTCAGCGCAGAAGAGTCCAAAATAGAAGGGGAT  1000
      |||||||||||||||| |||||||||| ||||||||||  ||||||||||
seq2  TATTGGAAAACGGGCA-GTCAGCGCAG-AGAGTCCAAATAAGAAGGGGAT  995

seq1  GGGGAACAAGACATGG--AGGAGATAGCCCGTCGAAAAAA--GATGGGGG  1046
      |||| |  ||||||||   |||||||||||||||||||||   |||||||
seq2  GGGGGAACAGACATGGGAGGGAGATAGCCCGTCGAAAAAAAGAATGGGGG  1045

seq1  AG  1048
      ||
seq2  AG  1047