BAC Information

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BAC

Clone NameB6Ng01-299C04
Chromosome6 (Build37)
Map Location 115,685,740 - 115,790,795
singlet/doubletdoublet
Overlap geneTmem40, EG620848, Cand2, Rpl32, BC060267
Upstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik
Downstream geneMbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299C04.bB6Ng01-299C04.g
ACCGA094063GA094064
length1,142769
definitionB6Ng01-299C04.b B6Ng01-299C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,789,637 - 115,790,795)(115,685,740 - 115,686,505)
sequence
gaattcttaagatcctaatatacttatgaaacctatcactttgtattagg
tagttaataaaatatttttattaaaaagtaaggtccctttggcattgtgt
tcttgaccacttgcattggctctgaggaattttagatttgcccttaatat
ccctgtgcgagtgtggcttatggctccattgcaactcaccctttaaccct
gatcctttgtgaaaccttctctctcccaatgtttggtgccatttccatgg
caggtggtataccatcatggttctagttccgacgatcaattgtcattcta
aggtttggtttgaaaattaaatcgaatgaaggcaaagtaaaccagctgtc
aggaagctatttgtcgtaggatagcgagtgggtataggcagatgtgctct
gttgcaggctaattgatttttcctctggtgaacaggtggcagctgtgaga
gggatgctggaggtggagagatcattggtcacagagtagtcaggttcagt
tcctagcatgtctatggaggggatctgttgccctcctctgggcacacagg
tcgtgtgtatacatgcatgtgaaataagttcacataagtgtaaagagatg
tgatgtggcaggaaagctggccatacctcccacttcacaataacccttaa
tattttcacaaacatcacaggaacacacataagtgcagagctctgtgctg
gggagggaaaaggatgagaaggctctgtagagacctcccaggaagagaac
agtgctaacagtatggcagagaagacaaagtgaggatggagatccagaca
caagcaggtcagagtccagagaaatctttggatgcctgggccatggccaa
aggttaggtggcaaagcaaatttcccaaatgtcagctatgagatgagata
aggctgcaggcaggccacttaacccccctctccctggtcgccttgaaggg
agctctgtctggccaattgctggggttccaggcgactctttcttttcaga
gataagtggcctgacctccgtgccttccctcgcatctcagtgaaacattg
tgcttgtcatgtttttgtagtgtcagagctgtgctcagaagacagtagag
cgagtgcctcggcttggggagtcagagaatgcttaatctagt
gaattctccttctttgttgaagtgctactgagcgaagttctctgtcattt
acactccatctctgtgctctctatgtctcctcaccgtcacacagggctct
tggaaacagttcctaaatgcggacagggtgtctgagccattcttttttat
tagttatttattttatgcatatgagtatgctgtagctgtcttcagacacg
ccagaagagggaatcaggtctcattacagatggttgtgagtcaccatgtg
gttgctgggaattgaactcaggacctctggaagagcagtcggtgctctta
accactgagccatcttctctccaacactctgagccattcttaaacaatac
agggtttcaagatagtggaatgaatcataacccatcattctgctagcaaa
actgagggtcagttgtttggggggtgaccagtcaagaccatgctgaaagt
cggggtttcagtcagctaggaaggctgacagcccttgacccattgtaacc
atggtagcagggacttcagtcccacctgaatggctgcagcctcactaccc
cacttgtatctgcctgggagccttcagagcatgagactctaccctttgtg
tgcccactgggctctcggccctcacggctgtctactccaaggtcaggaga
caagcagttacctccgcagagctgaagctcgtccattaagcacttccagt
tccccatggtcggcacctgggtggagacaaggcttggtgaggttctcttc
agttgtctgagagccacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115789637_115790795
seq2: B6Ng01-299C04.b_44_1185 (reverse)

seq1  ACTAGATTTAGCATCCTCCTGACTCCCCACAACCCGAGGCACTCGCTTCT  50
      |||||||| ||||| || |||||||||  ||| ||||||||||||| |||
seq2  ACTAGATTAAGCATTCT-CTGACTCCC--CAAGCCGAGGCACTCGC-TCT  46

seq1  ACTGGCCCTTCTGAGCCACAGCCTCTGAACACTTACAAAACCATGACAAG  100
      ||||   |||||||| ||||| ||||| |||| ||||||| |||||||| 
seq2  ACTG--TCTTCTGAG-CACAG-CTCTG-ACAC-TACAAAAACATGACAA-  89

seq1  GCACCATGGTTTCACTGAGATGCGAGGGAAGGCACGGAGGTCAGGCAACC  150
      |||| || |||||||||||||||||||||||||||||||||||||| | |
seq2  GCACAAT-GTTTCACTGAGATGCGAGGGAAGGCACGGAGGTCAGGCCA-C  137

seq1  TTATCTCCTGAAAAGAAAGAGTCGCCCTGGAACCCCAGCAATTGGCCAGA  200
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TTATCT-CTGAAAAGAAAGAGTCG-CCTGGAACCCCAGCAATTGGCCAGA  185

seq1  CAGAGCTCCCCTTCAAGGCGACCAGGGAGAGGGGGGTTAAGTGGCCCTGC  250
      ||||||| |||||||||||||||||||||||||||||||||||| |||| 
seq2  CAGAGCT-CCCTTCAAGGCGACCAGGGAGAGGGGGGTTAAGTGG-CCTG-  232

seq1  CCTGCAGCCTTATCTCATCTCATAGCTGACATTTGGGAAATTTGCTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCCTTATCTCATCTCATAGCTGACATTTGGGAAATTTGCTTTGC  282

seq1  CACCTAACC-TTGGCCATGGCCCAGGCATCCAAAGATTTCTCTGGACTCT  349
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAACCTTTGGCCATGGCCCAGGCATCCAAAGATTTCTCTGGACTCT  332

seq1  GACCTGCTTGTGTCTGGATCTCCATCCTCACTTTGTCTTCTCTGCCATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCTTGTGTCTGGATCTCCATCCTCACTTTGTCTTCTCTGCCATAC  382

seq1  TGTTAGCACTGTTCTCTTCCTGGGAGGTCTCTACAGAGCCTTCTCATCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCACTGTTCTCTTCCTGGGAGGTCTCTACAGAGCCTTCTCATCCT  432

seq1  TTTCCCTCCCCAGCACAGAGCTCTGCACTTATGTGTGTTCCTGTGATGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCCCCAGCACAGAGCTCTGCACTTATGTGTGTTCCTGTGATGTT  482

seq1  TGTGAAAATATTAAGGGTTATTGTGAAGTGGGAGGTATGGCCAGCTTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATATTAAGGGTTATTGTGAAGTGGGAGGTATGGCCAGCTTTCC  532

seq1  TGCCACATCACATCTCTTTACACTTATGTGAACTTATTTCACATGCATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATCACATCTCTTTACACTTATGTGAACTTATTTCACATGCATGT  582

seq1  ATACACACGACCTGTGTGCCCAGAGGAGGGCAACAGATCCCCTCCATAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACGACCTGTGTGCCCAGAGGAGGGCAACAGATCCCCTCCATAGA  632

seq1  CATGCTAGGAACTGAACCTGACTACTCTGTGACCAATGATCTCTCCACCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAGGAACTGAACCTGACTACTCTGTGACCAATGATCTCTCCACCT  682

seq1  CCAGCATCCCTCTCACAGCTGCCACCTGTTCACCAGAGGAAAAATCAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCCCTCTCACAGCTGCCACCTGTTCACCAGAGGAAAAATCAATT  732

seq1  AGCCTGCAACAGAGCACATCTGCCTATACCCACTCGCTATCCTACGACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCAACAGAGCACATCTGCCTATACCCACTCGCTATCCTACGACAA  782

seq1  ATAGCTTCCTGACAGCTGGTTTACTTTGCCTTCATTCGATTTAATTTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTCCTGACAGCTGGTTTACTTTGCCTTCATTCGATTTAATTTTCA  832

seq1  AACCAAACCTTAGAATGACAATTGATCGTCGGAACTAGAACCATGATGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCTTAGAATGACAATTGATCGTCGGAACTAGAACCATGATGGT  882

seq1  ATACCACCTGCCATGGAAATGGCACCAAACATTGGGAGAGAGAAGGTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACCTGCCATGGAAATGGCACCAAACATTGGGAGAGAGAAGGTTTC  932

seq1  ACAAAGGATCAGGGTTAAAGGGTGAGTTGCAATGGAGCCATAAGCCACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGATCAGGGTTAAAGGGTGAGTTGCAATGGAGCCATAAGCCACAC  982

seq1  TCGCACAGGGATATTAAGGGCAAATCTAAAATTCCTCAGAGCCAATGCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACAGGGATATTAAGGGCAAATCTAAAATTCCTCAGAGCCAATGCAA  1032

seq1  GTGGTCAAGAACACAATGCCAAAGGGACCTTACTTTTTAATAAAAATATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAAGAACACAATGCCAAAGGGACCTTACTTTTTAATAAAAATATT  1082

seq1  TTATTAACTACCTAATACAAAGTGATAGGTTTCATAAGTATATTAGGATC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACTACCTAATACAAAGTGATAGGTTTCATAAGTATATTAGGATC  1132

seq1  TTAAGAATTC  1159
      ||||||||||
seq2  TTAAGAATTC  1142

seq1: chr6_115685740_115686505
seq2: B6Ng01-299C04.g_67_835

seq1  GAATTCTCCTTCTTTGTTGAAGTGCTACTGAGCGAAGTTCTCTGTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCTTTGTTGAAGTGCTACTGAGCGAAGTTCTCTGTCATTT  50

seq1  ACACTCCATCTCTGTGCTCTCTATGTCTCCTCACCGTCACACAGGGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCATCTCTGTGCTCTCTATGTCTCCTCACCGTCACACAGGGCTCT  100

seq1  TGGAAACAGTTCCTAAATGCGGACAGGGTGTCTGAGCCATTCTTTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAGTTCCTAAATGCGGACAGGGTGTCTGAGCCATTCTTTTTTAT  150

seq1  TAGTTATTTATTTTATGCATATGAGTATGCTGTAGCTGTCTTCAGACACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTTATTTTATGCATATGAGTATGCTGTAGCTGTCTTCAGACACG  200

seq1  CCAGAAGAGGGAATCAGGTCTCATTACAGATGGTTGTGAGTCACCATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGGGAATCAGGTCTCATTACAGATGGTTGTGAGTCACCATGTG  250

seq1  GTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGTGCTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGTGCTCTTA  300

seq1  ACCACTGAGCCATCTTCTCTCCAACACTCTGAGCCATTCTTAAACAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGCCATCTTCTCTCCAACACTCTGAGCCATTCTTAAACAATAC  350

seq1  AGGGTTTCAAGATAGTGGAATGAATCATAACCCATCATTCTGCTAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCAAGATAGTGGAATGAATCATAACCCATCATTCTGCTAGCAAA  400

seq1  ACTGAGGGTCAGTTGTTTGGGGGGTGACCAGTCAAGACCATGCTGAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGGTCAGTTGTTTGGGGGGTGACCAGTCAAGACCATGCTGAAAGT  450

seq1  CGGGGTTTCAGTCAGCTAGGAAGGCTGACAGCCCTTGACCCATTGTAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTTTCAGTCAGCTAGGAAGGCTGACAGCCCTTGACCCATTGTAACC  500

seq1  ATGGTAGCAGGGACTTCAGTCCCACCTGAATGGCTGCAGCCTCACTACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGCAGGGACTTCAGTCCCACCTGAATGGCTGCAGCCTCACTACCC  550

seq1  CACTTGTATCTGCCTGGGAGCCTTCAGAGCATGAGACTCTACCCTTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTATCTGCCTGGGAGCCTTCAGAGCATGAGACTCTACCCTTTGTG  600

seq1  TGCCCACTGGGCTCTCGGCCCTCACGGCTGTCTACTCCAAGGTCAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTGGGCTCTCGGCCCTCACGGCTGTCTACTCCAAGGTCAGGAGA  650

seq1  CAAGCAGTTACCTCCGCAGAGCTGAAGCTCGTCC-TTTAGCACTTCCAGT  699
      |||||||||||||||||||||||||||||||||| || ||||||||||||
seq2  CAAGCAGTTACCTCCGCAGAGCTGAAGCTCGTCCATTAAGCACTTCCAGT  700

seq1  TCCCCATGGTCGGCACCTGGGTGGAGACAAAGCTTGGTGAGG-TCCCTCC  748
      |||||||||||||||||||||||||||||| ||||||||||| || || |
seq2  TCCCCATGGTCGGCACCTGGGTGGAGACAAGGCTTGGTGAGGTTCTCTTC  750

seq1  AG-TGTCTGAGAGCCACCT  766
      || ||||||||||||||||
seq2  AGTTGTCTGAGAGCCACCT  769