BAC Information

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BAC

Clone NameB6Ng01-299O04
Chromosome6 (Build37)12 (Build37)
Map Location 12,285,197 - 12,286,35196,061,974 - 96,062,049
singlet/doubletsingletsinglet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299O04.bB6Ng01-299O04.g
ACCGA094606GA094607
length1,140227
definitionB6Ng01-299O04.b B6Ng01-299O04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,285,197 - 12,286,351)(96,061,974 - 96,062,049)
sequence
gaattcatctttcttaaaagaaatgtgggtcctcaggcgatataaatgtt
tttatataatttgcttatgaagaatttctattctcaggtttatctcatta
actctgctgtaacttatttatttatttattatttatttatgtgtatggcc
tctcataatgtatcattttatttgtattttgatcctgtcattgtgattta
catgttacagttttgaagtatatataagaaagaatttcaagttcacaggt
gatatattccattccaacatctaaagtgaaatcaaaggtatgaggaagca
ttaaaaaaaagtattaatattatagcagagaataacaatttttattggta
attctcagaactgccattcctttttgctttctatgaaaaagtaatttaaa
tttttagtatctgtacaatatgtaaatgtgctgttatgagaatggatata
gactatgaaattagacgagagaccatgggaaggaaacacggtatattgag
gaaggagagtgacgggaatgttagtggatttaaccctaattttcctcttt
gtagggcactaatgacacatttctttgtggccattagagaagcagcaaga
gctacctactgctgctgaactgaatacagggtttgcacaggggttggtag
gtaggtggtctgagcatccagctggactcatagggatgcataaaatggta
tgtgtgttgtttaattcccacagagagcagcttagttttccctgaagaca
gcatttgctagggtgttaggatctgaacctgcagttgtccctgcaaaatt
cacaaagcaaaagaagcaatttaaaagagtcctgaatgcattgggcttta
ctactaaaagcagtctcattttcacattcttgtaaggaggaaattttcct
gggtgtttgccagagactacactaatcaccccgagcaggatcacctacca
ttctccgggatgttagtttttgttgtatcatcttcagcacaaattgtatt
tactgttggtatatgctaattatatattaaaaaactgaatttactactta
tttaacataataataagttgtaacagattttacagggaagacattattgt
ctaaacaaaggcaaatgttcagagcctctagaagttccat

aagattcaagattggatgtcatgttaatgagactttattggtgtagcttc
agatgttatgaagagacacaatctcatagtcaaattcctgattctctgac
tcttacaatgtttgtgcccactattcttcaaatatatatatatatatata
tatatatatatttgaatatatttgaatatttgttatatatattatatatg
tgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12285197_12286351
seq2: B6Ng01-299O04.b_45_1184

seq1  GAATTCATCTTTCTTAAAAGAAATGTGGGTCCTCAGGCGATATAAATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTCTTAAAAGAAATGTGGGTCCTCAGGCGATATAAATGTT  50

seq1  TTTATATAATTTGCTTATGAAGAATTTCTATTCTCAGGTTTATCTCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAATTTGCTTATGAAGAATTTCTATTCTCAGGTTTATCTCATTA  100

seq1  ACTCTGCTGTAACTTATTTATTTATTTATTATTTATTTATGTGTATGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTGTAACTTATTTATTTATTTATTATTTATTTATGTGTATGGCC  150

seq1  TCTCATAATGTATCATTTTATTTGTATTTTGATCCTGTCATTGTGATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAATGTATCATTTTATTTGTATTTTGATCCTGTCATTGTGATTTA  200

seq1  CATGTTACAGTTTTGAAGTATATATAAGAAAGAATTTCAAGTTCACAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACAGTTTTGAAGTATATATAAGAAAGAATTTCAAGTTCACAGGT  250

seq1  GATATATTCCATTCCAACATCTAAAGTGAAATCAAAGGTATGAGGAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTCCATTCCAACATCTAAAGTGAAATCAAAGGTATGAGGAAGCA  300

seq1  TTAAAAAAAAGTATTAATATTATAGCAGAGAATAACAATTTTTATTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAGTATTAATATTATAGCAGAGAATAACAATTTTTATTGGTA  350

seq1  ATTCTCAGAACTGCCATTCCTTTTTGCTTTCTATGAAAAAGTAATTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGAACTGCCATTCCTTTTTGCTTTCTATGAAAAAGTAATTTAAA  400

seq1  TTTTTAGTATCTGTACAATATGTAAATGTGCTGTTATGAGAATGGATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTATCTGTACAATATGTAAATGTGCTGTTATGAGAATGGATATA  450

seq1  GACTATGAAATTAGACGAGAGACCATGGGAAGGAAACACGGTATATTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGAAATTAGACGAGAGACCATGGGAAGGAAACACGGTATATTGAG  500

seq1  GAAGGAGAGTGACGGGAATGTTAGTGGATTTAACCCTAATTTTCCTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAGTGACGGGAATGTTAGTGGATTTAACCCTAATTTTCCTCTTT  550

seq1  GTAGGGCACTAATGACACATTTCTTTGTGGCCATTAGAGAAGCAGCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCACTAATGACACATTTCTTTGTGGCCATTAGAGAAGCAGCAAGA  600

seq1  GCTACCTACTGCTGCTGAACTGAATACAGGGTTTGCACAGGGGTTGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTACTGCTGCTGAACTGAATACAGGGTTTGCACAGGGGTTGGTAG  650

seq1  GTAGGTGGTCTGAGCATCCAGCTGGACTCATAGGGATGCATAAAATGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGGTCTGAGCATCCAGCTGGACTCATAGGGATGCATAAAATGGTA  700

seq1  TGTGTGTTGTTTAATTCCCACAGAGAGCAGCTTAGTTTTCCCTGAAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTGTTTAATTCCCACAGAGAGCAGCTTAGTTTTCCCTGAAGACA  750

seq1  GCATTTGCTAGGGTGTTAGGATCTGAACCTGCAGTTGTCCCTGCAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCTAGGGTGTTAGGATCTGAACCTGCAGTTGTCCCTGCAAAATT  800

seq1  CACAAAGCAAAAGAAGCAATTTAAAAGAGTCCTGAATGCATTGGGCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCAAAAGAAGCAATTTAAAAGAGTCCTGAATGCATTGGGCTTTA  850

seq1  CTACT-AAAGCAGTCTCA-TTTCACATTCTTGTAAGGAGGAAATTTTCCT  898
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  CTACTAAAAGCAGTCTCATTTTCACATTCTTGTAAGGAGGAAATTTTCCT  900

seq1  GGGTGTTTGCCAGAGACTACACTAATCACCCCGAGCAGGATCACCTACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTTGCCAGAGACTACACTAATCACCCCGAGCAGGATCACCTACCA  950

seq1  TTCTCCGGGATGTTAGTTTTTGTTGTAATCATCTTCAAGCACAAAATTGT  998
      |||||||||||||||||||||||||| ||||||||| ||||| |||||| 
seq2  TTCTCCGGGATGTTAGTTTTTGTTGT-ATCATCTTC-AGCAC-AAATTG-  996

seq1  TATTTACTGTTGGTTATATTGCTTAAATTATAATATTAAAAAAACCTGAT  1048
      ||||||||||||| |||| ||||  |||||| |||||||||||  |||| 
seq2  TATTTACTGTTGG-TATA-TGCT--AATTAT-ATATTAAAAAA--CTGAA  1039

seq1  TTTAACTTACTTTAATTTAACATATAAATAGGTTGGTAAACAAGATTTTA  1098
      ||||   |||||  ||||||||||  |||| ||| ||||   ||||||||
seq2  TTTA--CTACTT--ATTTAACATAATAATAAGTT-GTAA--CAGATTTTA  1082

seq1  CAGGG-AGACATTTATTGTCTAAACAAAGCAATGTTTTCAGAGCCTCTAG  1147
      ||||| ||||| |||||||||||||||||  |  | ||||||||||||||
seq2  CAGGGAAGACA-TTATTGTCTAAACAAAGGCAAATGTTCAGAGCCTCTAG  1131

seq1  AAG-TCCAT  1155
      ||| |||||
seq2  AAGTTCCAT  1140


seq1: chr12_96061974_96062049
seq2: B6Ng01-299O04.g_208_303 (reverse)

seq1  ACACACACACACACACACACACACACACATAT---ATATATAT-------  40
      ||||||||||||||||||||||||||||||||   ||||||||       
seq2  ACACACACACACACACACACACACACACATATATAATATATATAACAAAT  50

seq1  ------ATATAT----ATATATATATATATATATATATATATATAT  76
            ||||||    ||||||||||||||||||||||||||||||
seq2  ATTCAAATATATTCAAATATATATATATATATATATATATATATAT  96


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