BAC Information

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BAC

Clone NameB6Ng01-300B16
Chromosome6 (Build37)
Map Location 36,251,976 - 36,253,121
singlet/doubletsinglet
Overlap gene9330158H04Rik
Upstream geneSlc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
Downstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300B16.bB6Ng01-300B16.g
ACCGA094766GA094767
length1,1691,016
definitionB6Ng01-300B16.b B6Ng01-300B16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccagcagcctctgcaaaagctgaaggtgaattttctgtgtagtc
tctgacctcaactttactacctttatacacactactgaaaacacttcaca
taaaagctccactcttaactttcaggtgaaagaaagccactcccacaatg
gagtttgaggtgactgatggactctagagtgtcccgagaggttttgagaa
atgaagactcaacaattgttccttcttctcccaaatcttgctgctctctg
tggccagcagagcttttctccctgtttttgaggagtgtcgggcacagggc
taagtgccctgtcaaccacaagcctatgggactccaactttattatctat
aatggttgagagcctggccagactgtggtaatgcactgatacctcagaga
accaatgaggcattaaaaggtttcattcacttaatggttactaattaatt
gacttccacgcagccatgaatgtcatagagttttctgtaaaaggcattgt
actgtttttaaaatagcataaatgatttttgaagacagcctttctcttct
tttgaatgaagtggctctaactcaccccttttcctcaaatcagttgacat
ctcttttgaaattcgtatgtcaaaaatttacatccaaaggcacaatattg
tacaattctaaccactatcaaaagaaactaccacccttctgagaccttcc
ctgcctctaccgagtagtaggagttccctccagatacgaaaagctcacaa
aaagacttctgtgaaagattgtaattctctcctgctattattcctttctt
taaataagagtaaaaattgctccttttgttccctataggagtttgagttc
acttccagttgtacatttctacattcaaaaattcttaagaaggaattaaa
gggaaaaggaacttccactaagcaacttcttcccagtgcattagaacctg
cattgtataaaagaactgccaaagagttgttccataaaatgagacattaa
attagtgtcaccttgtccattatttaaacaataaagtgcattagaagcac
aagaattatttattatttaatagggcaaacacagtgcagaagaactacaa
tgcacatgaagaacatgaggaaaaaaaagaagaaggctctggatgatggg
gtgttggattggtgtggtt

gaattcctcttggaagattttacctttgatgagtatgaagtggccctcct
tgtcttttttgataactttgggttggaagtcgattttattcgatattaga
atgcctactccaggttgtttcttcagaccatttgcttggaaaatcatttt
ccaacctttcattctgaggtagtctctgccttttttcctgagatgggttt
cctgtaagcagcaaaatgttgggtcctttttgtgtagctagtctgttagt
ctatgtctttttattggggaattgagaccattgatattaagagatgctaa
gaaaaagtaattgttgcttccttttatttttgttgttagagttggcattc
tgttcttgtggctgtcttcctttagttttgttgaaggattactttcttga
tttttgtaggtcggggtttccatccttgtatttttttttctgttgttatc
ctttgaagggctggatttgtggaaagataatgtgtgaatttggttgtgtc
gtggaatactgtggtttctccatctatggtaattgaaagtttggctgggt
atagtagcctgggctggcatttgtgttctcttagtgtctgtataacatct
gtccaggatcttctggcttttatagtctctggtgaaaaatctggtgtaat
tctgataggcctgtctttatttgttacttgaccttttttcccttactgct
tttaatattctatcttcatttagtgcatttgtagttctgattattatgtg
tcaggagaaatttcttttctggtccagtctatttggagttctgtaggctt
cttgtatgttcatgggcatctctttctttaggtttgggaagttttctcta
taattttgttgaagatatttgatgacgctttaagttgaaaatcttcattc
tcatctactcctattatccgtaggtttggtcttctcatgtgtcctggact
tcctggatgtttgagttaggatctttttgcatttgcattttctttgatga
tgtggccatgttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36251976_36253121
seq2: B6Ng01-300B16.b_44_1212 (reverse)

seq1  AACCACA------------CCCATCATCCAGAGCC-TCT--CTTTTTTTC  35
      |||||||            |||||||||||||||| |||   ||||||||
seq2  AACCACACCAATCCAACACCCCATCATCCAGAGCCTTCTTCTTTTTTTTC  50

seq1  CTCATG-TCTTCATGTGCATTGTAGT--CTCTGCACTGTGTTTG-CCTAT  81
      |||||| |||||||||||||||||||   ||||||||||||||| |||||
seq2  CTCATGTTCTTCATGTGCATTGTAGTTCTTCTGCACTGTGTTTGCCCTAT  100

seq1  --AATAAT-AATAA-TCTTGTGCTTCTAATGCACTTTATTGTTTAAATAA  127
        |||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TAAATAATAAATAATTCTTGTGCTTCTAATGCACTTTATTGTTTAAATAA  150

seq1  TGGACAAGGTGACACTAATTTAATGTCTCATTTTATGGAACAACTCTTTG  177
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGGTGACACTAATTTAATGTCTCATTTTATGGAACAACTCTTTG  200

seq1  GCAGTTCTTTTATACAATGCAGGTTCTAATGCACTGGGAAGAAGTTGCTT  227
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTTTTATACAATGCAGGTTCTAATGCACTGGGAAGAAGTTGCTT  250

seq1  AGTGGAAGTTCCTTTTCCCCTTAATTCCTTCTTAAGAATTTTTGAATGTA  277
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTGGAAGTTCCTTTTCCCTTTAATTCCTTCTTAAGAATTTTTGAATGTA  300

seq1  GAAATGTACAACTGGAAGTGAACTCAAACTCCTATAGGGAACAAAAGGAG  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTACAACTGGAAGTGAACTCAAACTCCTATAGGGAACAAAAGGAG  350

seq1  CAATTTTTACTCTTATTTAAAGAAAGGAATAATAGCAGGAGAGAATTACA  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTACTCTTATTTAAAGAAAGGAATAATAGCAGGAGAGAATTACA  400

seq1  ATCTTTCACAGAAGTCTTTTTGTGAGCTTTTCGTATCTGGAGGGAACTCC  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCACAGAAGTCTTTTTGTGAGCTTTTCGTATCTGGAGGGAACTCC  450

seq1  TACTACTCGGTAGAGGCAGGGAAGGTCTCAGAAGGGTGGTAGTTTCTTTT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTCGGTAGAGGCAGGGAAGGTCTCAGAAGGGTGGTAGTTTCTTTT  500

seq1  GATAGTGGTTAGAATTGTACAATATTGTGCCTTTGGATGTAAATTTTTGA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGGTTAGAATTGTACAATATTGTGCCTTTGGATGTAAATTTTTGA  550

seq1  CATACGAATTTCAAAAGAGATGTCAACTGATTTGAGGAAAAGGGGTGAGT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGAATTTCAAAAGAGATGTCAACTGATTTGAGGAAAAGGGGTGAGT  600

seq1  TAGAGCCACTTCATTCAAAAGAAGAGAAAGGCTGTCTTCAAAAATCATTT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCACTTCATTCAAAAGAAGAGAAAGGCTGTCTTCAAAAATCATTT  650

seq1  ATGCTATTTTAAAAACAGTACAATGCCTTTTACAGAAAACTCTATGACAT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTTTAAAAACAGTACAATGCCTTTTACAGAAAACTCTATGACAT  700

seq1  TCATGGCTGCGTGGAAGTCAATTAATTAGTAACCATTAAGTGAATGAAAC  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTGCGTGGAAGTCAATTAATTAGTAACCATTAAGTGAATGAAAC  750

seq1  CTTTTAATGCCTCATTGGTTCTCTGAGGTATCAGTGCATTACCACAGTCT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATGCCTCATTGGTTCTCTGAGGTATCAGTGCATTACCACAGTCT  800

seq1  GGCCAGGCTCTCAACCATTATAGATAATAAAGTTGGAGTCCCATAGGCTT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCTCTCAACCATTATAGATAATAAAGTTGGAGTCCCATAGGCTT  850

seq1  GTGGTTGACAGGGCACTTAGCCCTGTGCCCGACACTCCTCAAAAACAGGG  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGACAGGGCACTTAGCCCTGTGCCCGACACTCCTCAAAAACAGGG  900

seq1  AGAAAAGCTCTGCTGGCCACAGAGAGCAGCAAGATTTGGGAGAAGAAGGA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCTCTGCTGGCCACAGAGAGCAGCAAGATTTGGGAGAAGAAGGA  950

seq1  ACAATTGTTGAGTCTTCATTTCTCAAAACCTCTCGGGACACTCTAGAGTC  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTTGAGTCTTCATTTCTCAAAACCTCTCGGGACACTCTAGAGTC  1000

seq1  CATCAGTCACCTCAAACTCCATTGTGGGAGTGGCTTTCTTTCACCTGAAA  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCACCTCAAACTCCATTGTGGGAGTGGCTTTCTTTCACCTGAAA  1050

seq1  GTTAAGAGTGGAGCTTTTATGTGAAGTGTTTTCAGTAGTGTGTATAAAGG  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGTGGAGCTTTTATGTGAAGTGTTTTCAGTAGTGTGTATAAAGG  1100

seq1  TAGTAAAGTTGAGGTCAGAGACTACACAGAAAATTCACCTTCAGCTTTTG  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGTTGAGGTCAGAGACTACACAGAAAATTCACCTTCAGCTTTTG  1150

seq1  CAGAGGCTGCTGGGAATTC  1146
      |||||||||||||||||||
seq2  CAGAGGCTGCTGGGAATTC  1169


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