BAC Information

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BAC

Clone NameB6Ng01-300C10
Chromosome6 (Build37)
Map Location 19,428,349 - 19,557,233
singlet/doubletdoublet
Overlap genenone
Upstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300C10.bB6Ng01-300C10.g
ACCGA094800GA094801
length1,1041,130
definitionB6Ng01-300C10.b B6Ng01-300C10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,428,349 - 19,429,457)(19,556,108 - 19,557,233)
sequence
gaattcactttgtacaccaggctgactgcgaactcagaaatccacctgcc
tctgcctcccaagtcctgggaataaaggcatgcaccgccaccacctggct
gatttaaaatatcttatcagcagttaatttagtgaccccagaaaaaaagg
ataccttattttatgtctgttatttttgtttgtttgttttgacagatatt
gggtcagttttactgtgtagatgtttatcgactctttgttttttttttgt
tttttttttttttttttttttttgctaaaatttcattttaacatgtctct
atttggtctaaaatgtcttgatcccagagagtgaagggcagaaacagaat
aataaaagcctgaagttttagtaacctttttattttgtcaatgtaaaata
atagaactctgcataacattggcagtgacgacttaggtttagtggtaggc
caagaagaaggccagtctattttcttttttttttcttttttttcttttct
tttttttttttttttttattaaaaaggaaacatctgtcccagtgtttaaa
agcactgacaaatctcagtctacggggttatgtgagctttattaaaagga
aaatgttgtcaggcatttaaagtataatttatcacttttaaaaaaatggg
ctgtttgatttttttttcctttgagttatctactttttaaagtccatgta
agtagcatacccattgtctctaatttttttcctagaaatatattttttta
aatctaaatgaagtttaacccccatctttataattagttttaaacaaaag
aaaatcatcctccctgtgagacaagacttggtgaaggataaaactagtct
gtaggagtgagatcaagtgtctgtcagattttatataaagaaaggccata
aggtgaaataggaccatatttgggaaagttttttttttttttaatttttt
taatcaagccttaaaaggatatggaattcttctgatctgtattcatttat
ggtttaatattggaaaaagtggtatttcctaatctagactttggactgtt
gtagatatgagacataaggggtccttacctctttcaggcttaggaggaag
ttgt
gaattctctactgatataagattattctcctctcccctcccttcattccc
ttcccttagcagtttatacagtttatagatgtaactatctttcaaaggtc
actggccccttctctccacagccttgtctctttcttctcttcattcactg
acttcctgtcctcctcttctttacttcttttttttttaatttttgccttt
aatttaatgactacaagcctagaaaaataataaattgggggaacttggat
agtttttaaaaagtacaacatatcatctatgccataactgagactaaagg
aaaagcacaagaaaaagagcaaaccaaaatgagacaccaaaggccaacta
gacagagtcacttcataagattaaaaccagcgcggatttcaacgccacat
catctcttttcctgaaaatctaataattaccaaggatctcagatgaactt
ttaaagttaaacttaccattttggctggaaatgtgaatttcttaggctag
ttttcttaattactagtgagcttgggagctatggctgtgaaaactcaatg
cattcattaaactggatttaaaaaataattgtatgtttaactttaacttt
tgacaacttttcagcatttgaaaagttttcttgaacttacctgatcttta
agctgactgcattaaaagacacaaagcacttaaaataacagaagttccaa
atgaaggcagaagtatattttcttctaattgggatgtttttatcacacag
gttgtatttctgtttatattcctaagctccatgccttcgtttgtctcctg
aaatggatgggtagctatctgtgtacatttgtcctcatagagatatatta
ttatatatcgtcatgtgatttagaaaatataaagcagctgtctgagggat
tttgaaatgcgtgtcataccaaaagcatgattgcaaattctattagatct
agaccaaaggcagatcaaatgatgacaagacatgggatggggtcaatttg
aaaaggaaatgttcagtcaattgtataattctccagtttgaaatgacaag
catttttattgtgttttagaggcataaatgtgtttatagaaaatgttttt
agaaggcaaaatattcttatggcattttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19428349_19429457
seq2: B6Ng01-300C10.b_44_1147

seq1  GAATTCACTTTGTACACCAGGCTGACTGCGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTACACCAGGCTGACTGCGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCCAAGTCCTGGGAATAAAGGCATGCACCGCCACCACCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTCCTGGGAATAAAGGCATGCACCGCCACCACCTGGCT  100

seq1  GATTTAAAATATCTTATCAGCAGTTAATTTAGTGACCCCAGAAAAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAATATCTTATCAGCAGTTAATTTAGTGACCCCAGAAAAAAAGG  150

seq1  ATACCTTATTTTATGTCTGTTATTTTTGTTTGTTTGTTTTGACAGATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTATTTTATGTCTGTTATTTTTGTTTGTTTGTTTTGACAGATATT  200

seq1  GGGTCAGTTTTACTGTGTAGATGTTTATCGACTCTTTGTTTTTTTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTTTTACTGTGTAGATGTTTATCGACTCTTTGTTTTTTTTTTGT  250

seq1  TTTTTTTTTTTTTTTTTTTTTTTGCTAAAATTTCATTTTAACATGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTGCTAAAATTTCATTTTAACATGTCTCT  300

seq1  ATTTGGTCTAAAATGTCTTGATCCCAGAGAGTGAAGGGCAGAGACAGAAT  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTTGGTCTAAAATGTCTTGATCCCAGAGAGTGAAGGGCAGAAACAGAAT  350

seq1  AATAAAAGCCTGAAGTTTTAGTAACCTTTTTATTTTGTCAATGTAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCCTGAAGTTTTAGTAACCTTTTTATTTTGTCAATGTAAAATA  400

seq1  ATAGAACTCTGCATAACATTGGCAGTGACGACTTAGGTTTAGTGGTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACTCTGCATAACATTGGCAGTGACGACTTAGGTTTAGTGGTAGGC  450

seq1  CAAGAAGAAGGCCAGTCTATTTTCTTTTTTTTTTCTTTTTTTTCTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAAGGCCAGTCTATTTTCTTTTTTTTTTCTTTTTTTTCTTTTCT  500

seq1  TTTTTTTTTTTTTTTTTATTATATAGGAGACATCTGTCCCAGTGTTTAAA  550
      ||||||||||||||||||||| | |||| |||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTATTAAAAAGGAAACATCTGTCCCAGTGTTTAAA  550

seq1  AGCACTGACAAATCTCAGTCTACGGTGTTATGTGAGCTTTATTAAGAGGA  600
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  AGCACTGACAAATCTCAGTCTACGGGGTTATGTGAGCTTTATTAAAAGGA  600

seq1  AGATGTTGTCAGGCATTTAAAGTATAATTTATCACTTTTAAAAAAATGGG  650
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTCAGGCATTTAAAGTATAATTTATCACTTTTAAAAAAATGGG  650

seq1  CTGTTTGATTTTTTTTTCCTTTGAGTTATCTACTTTTTAAAGTCCATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGATTTTTTTTTCCTTTGAGTTATCTACTTTTTAAAGTCCATGTA  700

seq1  AGTAGCATACCCATTGTCTCTAATTTTTTTCCTAGAAATATATTTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATACCCATTGTCTCTAATTTTTTTCCTAGAAATATATTTTTTTA  750

seq1  AATCTAAATGAAGTTTAA-CCTCATCTTTATAATTAGTTTTAAACAAAAG  799
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  AATCTAAATGAAGTTTAACCCCCATCTTTATAATTAGTTTTAAACAAAAG  800

seq1  -AAATCAT-CTCCCTGTGAGACAAGACTTGGTG-AGGAT-AAACTAGTCT  845
       ||||||| |||||||||||||||||||||||| ||||| ||||||||||
seq2  AAAATCATCCTCCCTGTGAGACAAGACTTGGTGAAGGATAAAACTAGTCT  850

seq1  GTAGGAGTGAG-TCAAGTGTCTGTCAGATTTTATATAAGGGAAAGGCCAT  894
      ||||||||||| ||||||||||||||||||||||||||  ||||||||||
seq2  GTAGGAGTGAGATCAAGTGTCTGTCAGATTTTATATAA-AGAAAGGCCAT  899

seq1  AAGGTGAAATAGGACCATATTTGG--AAGTTTTTTTTTTTTT--AATTTT  940
      ||||||||||||||||||||||||  ||||||||||||||||  | ||||
seq2  AAGGTGAAATAGGACCATATTTGGGAAAGTTTTTTTTTTTTTTAATTTTT  949

seq1  TTAATCAAGC--TTAAAGGATATGGATTTTCTTTCTGTATCTGTA-TCAT  987
      ||||||||||  | |||||||||||| ||   ||||| ||||||| ||||
seq2  TTAATCAAGCCTTAAAAGGATATGGAATT--CTTCTG-ATCTGTATTCAT  996

seq1  TTAT-GTTTATTATTGGAAAAAGTGTTATTTTTTTCTTATTTTCTAGACT  1036
      |||| ||||| |||||||||||||| ||    |||| ||   ||||||| 
seq2  TTATGGTTTAATATTGGAAAAAGTGGTA----TTTCCTA--ATCTAGAC-  1039

seq1  TTTGGACTGTTTGTAGAATATGAGACTTAGGGGTTCTTTTTTCTCTCTTT  1086
      ||||||||| |||||| ||||||||| || ||| ||      ||  | | 
seq2  TTTGGACTG-TTGTAG-ATATGAGACATAAGGGGTC------CTTACCTC  1081

seq1  TTTCAGGCTTAGGAGGAGGTTGT  1109
      ||||||||||||||||| |||||
seq2  TTTCAGGCTTAGGAGGAAGTTGT  1104

seq1: chr6_19556108_19557233
seq2: B6Ng01-300C10.g_67_1196 (reverse)

seq1  CTAAAATGCACTAAGAA-ATATTTGCTTCT-AAAACATTTTCTAATAAAC  48
      |||||||||  |||||| || ||  ||||| |||||||||||| ||||||
seq2  CTAAAATGCCATAAGAATATTTTGCCTTCTAAAAACATTTTCT-ATAAAC  49

seq1  ACATTTATGCCTCTAAAACAC-ATAAAAATGCCTTTGTCA-TTCAAACTG  96
      ||||||||||||||||||||| ||||||||||  |||||| |||||||||
seq2  ACATTTATGCCTCTAAAACACAATAAAAATGC--TTGTCATTTCAAACTG  97

seq1  GAGAATTATACAATTGACTGAACATTTCCTTT--CAATTGACCCCATCCC  144
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  GAGAATTATACAATTGACTGAACATTTCCTTTTCAAATTGACCCCATCCC  147

seq1  ATGTCTTGTCATCATTTGATCTGCC-TTGGTCTAGATCTAATAGAATTTG  193
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGTCTTGTCATCATTTGATCTGCCTTTGGTCTAGATCTAATAGAATTTG  197

seq1  CAATCATGCTTTTGGTATGACACGCATTTCAAAATCCCTCAGACAGCTGC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATGCTTTTGGTATGACACGCATTTCAAAATCCCTCAGACAGCTGC  247

seq1  TTTATATTTTCTAAATCACATGACGATATATAATAATATATCTCTATGAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTCTAAATCACATGACGATATATAATAATATATCTCTATGAG  297

seq1  GACAAATGTACACAGATAGCTACCCATCCATTTCAGGAGACAAACGAAGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGTACACAGATAGCTACCCATCCATTTCAGGAGACAAACGAAGG  347

seq1  CATGGAGCTTAGGAATATAAACAGAAATACAACCTGTGTGATAAAAACAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGCTTAGGAATATAAACAGAAATACAACCTGTGTGATAAAAACAT  397

seq1  CCCAATTAGAAGAAAATATACTTCTGCCTTCATTTGGAACTTCTGTTATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTAGAAGAAAATATACTTCTGCCTTCATTTGGAACTTCTGTTATT  447

seq1  TTAAGTGCTTTGTGTCTTTTAATGCAGTCAGCTTAAAGATCAGGTAAGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGCTTTGTGTCTTTTAATGCAGTCAGCTTAAAGATCAGGTAAGTT  497

seq1  CAAGAAAACTTTTCAAATGCTGAAAAGTTGTCAAAAGTTAAAGTTAAACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAACTTTTCAAATGCTGAAAAGTTGTCAAAAGTTAAAGTTAAACA  547

seq1  TACAATTATTTTTTAAATCCAGTTTAATGAATGCATTGAGTTTTCACAGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATTTTTTAAATCCAGTTTAATGAATGCATTGAGTTTTCACAGC  597

seq1  CATAGCTCCCAAGCTCACTAGTAATTAAGAAAACTAGCCTAAGAAATTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTCCCAAGCTCACTAGTAATTAAGAAAACTAGCCTAAGAAATTCA  647

seq1  CATTTCCAGCCAAAATGGTAAGTTTAACTTTAAAAGTTCATCTGAGATCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAGCCAAAATGGTAAGTTTAACTTTAAAAGTTCATCTGAGATCC  697

seq1  TTGGTAATTATTAGATTTTCAGGAAAAGAGATGATGTGGCGTTGAAATCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATTATTAGATTTTCAGGAAAAGAGATGATGTGGCGTTGAAATCC  747

seq1  GCGCTGGTTTTAATCTTATGAAGTGACTCTGTCTAGTTGGCCTTTGGTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGTTTTAATCTTATGAAGTGACTCTGTCTAGTTGGCCTTTGGTGT  797

seq1  CTCATTTTGGTTTGCTCTTTTTCTTGTGCTTTTCCTTTAGTCTCAGTTAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTGGTTTGCTCTTTTTCTTGTGCTTTTCCTTTAGTCTCAGTTAT  847

seq1  GGCATAGATGATATGTTGTACTTTTTAAAAACTATCCAAGTTCCCCCAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGATGATATGTTGTACTTTTTAAAAACTATCCAAGTTCCCCCAAT  897

seq1  TTATTATTTTTCTAGGCTTGTAGTCATTAAATTAAAGGCAAAAATTAAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTTCTAGGCTTGTAGTCATTAAATTAAAGGCAAAAATTAAAA  947

seq1  AAAAAAGAAGTAAAGAAGAGGAGGACAGGAAGTCAGTGAATGAAGAGAAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAGTAAAGAAGAGGAGGACAGGAAGTCAGTGAATGAAGAGAAG  997

seq1  AAAGAGACAAGGCTGTGGAGAGAAGGGGCCAGTGACCTTTGAAAGATAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACAAGGCTGTGGAGAGAAGGGGCCAGTGACCTTTGAAAGATAGT  1047

seq1  TACATCTATAAACTGTATAAACTGCTAAGGGAAGGGAATGAAGGGAGGGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTATAAACTGTATAAACTGCTAAGGGAAGGGAATGAAGGGAGGGG  1097

seq1  AGAGGAGAATAATCTTATATCAGTAGAGAATTC  1126
      |||||||||||||||||||||||||||||||||
seq2  AGAGGAGAATAATCTTATATCAGTAGAGAATTC  1130