BAC Information

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BAC

Clone NameB6Ng01-300F07
Chromosome6 (Build37)
Map Location 99,216,767 - 99,388,050
singlet/doubletdoublet
Overlap genenone
Upstream geneGm765, LOC666019, LOC665963, LOC665979, Foxp1
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300F07.bB6Ng01-300F07.g
ACCGA094935GA094936
length1,124860
definitionB6Ng01-300F07.b B6Ng01-300F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,216,767 - 99,217,896)(99,387,200 - 99,388,050)
sequence
gaattcactccagggggatggcactgaggggcaaactaatacttggatgt
ccagctacttccaaaacaagcttgcatgtagcacttccatggagttctgc
tgcaggctgtatttcaatctcccataatcaaggaggcttttaaagacgct
cacggtttagacccagtctaaggttacattatacactcctcaaggcaaat
tctgtatatgtttgcaaaaaaacacataaataagaggcatatacatgcac
atatcacggcatatagtctcacatatgatacttatgcatatctaaaagag
aatacaaataaacacacatgtacagaatatcacttaactgtatcctctag
ctcactaatcatttaaggaaaataatgggagctttccaaaaatacatccc
aaatgcctgcttttcagatgtcaccaatgcatgaccgctcatttaaaaac
attatccagatattaggaaggatgcttttaagtgagtggcctcagccact
tatcacttcaattaaacaatgtaattacagtcaacaattttctccatttc
tgcagtaaaatatgtcatacctcaatgtaatttgtctgtagaacccagga
atgaagcaagaggggaaaacatgaaggctaggaatcttcttctggctttg
gctcagaccaaggactcacggcctctcccctccaggtccagcatcttgtt
gctcttagtaacctaattattgctttttttctgttttgttttgttttttt
tttttttcagttttcaaattataaattaaatgtagaattttaattccacc
gtttaacaaagaagggccatacagttttttttttttttttaaacatttat
ttatggaggcatgcctgcacagacactggaggtcagagaaaaaacctaag
aacttgtaaggttcggttcttttgtggctggagtcgaactcacgccatca
agcttggtggaagacaccttttaccccaccgagacatcttgccagccacc
attacttttttatgaattttaacagtataaccgatttcaaatgacgcatg
agaaagactatgttagatactcattctagccacacagaactgtggggaca
tcatgtcagagcacctatctatat

gaattcttctgggaggaaagaagtgtttgtagtatgaatgcgccataaac
cctgctgtgtgctctgtgtctggtgattgggggggggggcgctcgaccga
agcccctatgcttcctatactaaaaaggaggtttccttgaagagaggtga
atgtctttcttgaggtgtcccagcctgcttcagaagactgtcaggcttca
ggatctgagattctgtatttgggaagtggcttgataaagtctacatttct
caaaataaactgggattctctgggccttggtatctatattagacatttta
taatacactgttgtgtgtatggatgttttacctgcatgtgtattagtata
gcttgcatgtttggtgcctacacaggccagaagaaggtgtcatattccct
agagctgtggttacataggattgtgagccaccatgtgagtgctgggaatc
aaaccgtctctctgaaagcacagccagttcacttaacctctgagttatct
ctctggccctgtaacacagattttatgaaatggaagaagaactgtgacgt
ccttgagatggtgccttctacctggatgaccatcagtggcagtgatattt
taggagatgcttgttcatttaatttttgagtcatttgttgacttaacatt
ttatgtggcagtcctttttctgggagttttgaagggatggacaaagcctt
ttatctcatggggctgatagtctagtgagggaacacaggtttgaataagt
gaggcaaaggtttggaaatattgccagcagttcttgaggaggcaaattga
acattatggttacaataattggtcacggacagtcccttatgtgccttaca
cccattaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99216767_99217896
seq2: B6Ng01-300F07.b_45_1168

seq1  GAATTCACTCCAGGGGGATGGCACTGAGGGGCAAACTAATACTTGGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCAGGGGGATGGCACTGAGGGGCAAACTAATACTTGGATGT  50

seq1  CCAGCTACTTCCAAAACAAGCTTGCATGTAGCACTTCCATGGAGTTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTACTTCCAAAACAAGCTTGCATGTAGCACTTCCATGGAGTTCTGC  100

seq1  TGCAGGCTGTATTTCAATCTCCCATAATCAAGGAGGCTTTTAAAGACGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTGTATTTCAATCTCCCATAATCAAGGAGGCTTTTAAAGACGCT  150

seq1  CACGGTTTAGACCCAGTCTAAGGTTACATTATACACTCCTCAAGGCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTTAGACCCAGTCTAAGGTTACATTATACACTCCTCAAGGCAAAT  200

seq1  TCTGTATATGTTTGCAAAAAAACACATAAATAAGAGGCATATACATGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATATGTTTGCAAAAAAACACATAAATAAGAGGCATATACATGCAC  250

seq1  ATATCACGGCATATAGTCTCACATATGATACTTATGCATATCTAAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACGGCATATAGTCTCACATATGATACTTATGCATATCTAAAAGAG  300

seq1  AATACAAATAAACACACATGTACAGAATATCACTTAACTGTATCCTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAATAAACACACATGTACAGAATATCACTTAACTGTATCCTCTAG  350

seq1  CTCACTAATCATTTAAGGAAAATAATGGGAGCTTTCCAAAAATACATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAATCATTTAAGGAAAATAATGGGAGCTTTCCAAAAATACATCCC  400

seq1  AAATGCCTGCTTTTCAGATGTCACCAATGCATGACCGCTCATTTAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTGCTTTTCAGATGTCACCAATGCATGACCGCTCATTTAAAAAC  450

seq1  ATTATCCAGATATTAGGAAGGATGCTTTTAAGTGAGTGGCCTCAGCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCAGATATTAGGAAGGATGCTTTTAAGTGAGTGGCCTCAGCCACT  500

seq1  TATCACTTCAATTAAACAATGTAATTACAGTCAACAATTTTCTCCATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTCAATTAAACAATGTAATTACAGTCAACAATTTTCTCCATTTC  550

seq1  TGCAGTAAAATATGTCATACCTCAATGTAATTTGTCTGTAGAACCCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAAAATATGTCATACCTCAATGTAATTTGTCTGTAGAACCCAGGA  600

seq1  ATGAAGCAAGAGGGGAAAACATGAAGGCTAGGAATCTTCTTCTGGCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAAGAGGGGAAAACATGAAGGCTAGGAATCTTCTTCTGGCTTTG  650

seq1  GCTCAGACCAAGGACTCACGGCCTCTCCCCTCCAGGTCCAGCATCTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGACCAAGGACTCACGGCCTCTCCCCTCCAGGTCCAGCATCTTGTT  700

seq1  GCTCTTAGTAACCTAATTATTGCTTTTTTTCTGTTTTGTTTTGTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAGTAACCTAATTATTGCTTTTTTTCTGTTTTGTTTTGTTTTTTT  750

seq1  TTTTTTTCAGTTTTCAAATTATAAATTAAATGTAGAATTTTAATTCCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAGTTTTCAAATTATAAATTAAATGTAGAATTTTAATTCCACC  800

seq1  GTTTAACAAAGAAGGGCCATACAG-TTTTTTTTTTTTTTTAAACATTTAT  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTTAACAAAGAAGGGCCATACAGTTTTTTTTTTTTTTTTAAACATTTAT  850

seq1  TTATGGAGGCATGCCTGCACAGACACTGGAGGTCAGAGAAAAAACCTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAGGCATGCCTGCACAGACACTGGAGGTCAGAGAAAAAACCTAAG  900

seq1  AACTTGTAAGGTTCGGTTCTTTTGTGGCTGGAGTCGAACTCACGCCATCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTAAGGTTCGGTTCTTTTGTGGCTGGAGTCGAACTCACGCCATCA  950

seq1  AGCTTGGTGGAAGACACCTTT--ACCCACCGAGACATCTTGCCAGCCACC  997
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  AGCTTGGTGGAAGACACCTTTTACCCCACCGAGACATCTTGCCAGCCACC  1000

seq1  AATTACTTTTTAATGAATTTT-ACAGTATTACCCGATTTCAAATGACGCA  1046
       |||||||||| ||||||||| |||||| || ||||||||||||||||||
seq2  -ATTACTTTTTTATGAATTTTAACAGTA-TAACCGATTTCAAATGACGCA  1048

seq1  TGAGAAAGACTATGTTAGATTACTCAATTCTAAGCCACACAGAACTGTGG  1096
      ||||||||||||||||||| ||||| ||||| ||||||||||||||||||
seq2  TGAGAAAGACTATGTTAGA-TACTC-ATTCT-AGCCACACAGAACTGTGG  1095

seq1  GGGACCAATTCAGTGTCAGAGCACCTATCTATAT  1130
      ||    |  ||| |||||||||||||||||||||
seq2  GG----ACATCA-TGTCAGAGCACCTATCTATAT  1124


seq1: chr6_99387200_99388050
seq2: B6Ng01-300F07.g_66_925 (reverse)

seq1  TATT-ATGGGTGTAAGGCACATAAAGGGACTGTCC-TGACCAA-TATTGT  47
      |||| ||||||||||||||||| |||||||||||| ||||||| ||||||
seq2  TATTAATGGGTGTAAGGCACAT-AAGGGACTGTCCGTGACCAATTATTGT  49

seq1  AACCATAATGTTCAATTTGCCTCCTCAAGAACTGCTGGCAATATTTCCAA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAATGTTCAATTTGCCTCCTCAAGAACTGCTGGCAATATTTCCAA  99

seq1  ACCTTTGCCTCACTTATTC-AACCTGTGTT-CCTCACTAGACTATCAGCC  145
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  ACCTTTGCCTCACTTATTCAAACCTGTGTTCCCTCACTAGACTATCAGCC  149

seq1  CCATGAGAT-AAAGGCTTTGTCCATCCCTTCAAAACTCCCAG-AAAAGGA  193
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  CCATGAGATAAAAGGCTTTGTCCATCCCTTCAAAACTCCCAGAAAAAGGA  199

seq1  CTGCCACAT-AAATGTTAAGTCAACAAATGACTCAAAA--TTAATGAACA  240
      ||||||||| ||||||||||||||||||||||||||||  | ||||||||
seq2  CTGCCACATAAAATGTTAAGTCAACAAATGACTCAAAAATTAAATGAACA  249

seq1  AGCATCTCCTAAAATATCACTGCCACTGATGGTCATCCAGGTAGAAGGCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTCCTAAAATATCACTGCCACTGATGGTCATCCAGGTAGAAGGCA  299

seq1  CCATCTCAAGGACGTCACAGTTCTTCTTCCATTTCATAAAATCTGTGTTA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAAGGACGTCACAGTTCTTCTTCCATTTCATAAAATCTGTGTTA  349

seq1  CAGGGCCAGAGAGATAACTCAGAGGTTAAGTGAACTGGCTGTGCTTTCAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAGAGAGATAACTCAGAGGTTAAGTGAACTGGCTGTGCTTTCAG  399

seq1  AGAGACGGTTTGATTCCCAGCACTCACATGGTGGCTCACAATCCTATGTA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACGGTTTGATTCCCAGCACTCACATGGTGGCTCACAATCCTATGTA  449

seq1  ACCACAGCTCTAGGGAATATGACACCTTCTTCTGGCCTGTGTAGGCACCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCTCTAGGGAATATGACACCTTCTTCTGGCCTGTGTAGGCACCA  499

seq1  AACATGCAAGCTATACTAATACACATGCAGGTAAAACATCCATACACACA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCAAGCTATACTAATACACATGCAGGTAAAACATCCATACACACA  549

seq1  ACAGTGTATTATAAAATGTCTAATATAGATACCAAGGCCCAGAGAATCCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTATTATAAAATGTCTAATATAGATACCAAGGCCCAGAGAATCCC  599

seq1  AGTTTATTTTGAGAAATGTAGACTTTATCAAGCCACTTCCCAAATACAGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTTGAGAAATGTAGACTTTATCAAGCCACTTCCCAAATACAGA  649

seq1  ATCTCAGATCCTGAAGCCTGACAGTCTTCTGAAGCAGGCTGGGACACCTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGATCCTGAAGCCTGACAGTCTTCTGAAGCAGGCTGGGACACCTC  699

seq1  AAGAAAGACATTCACCTCTCTTCAAGGAAACCTCCTTTTTAGTATAGGAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGACATTCACCTCTCTTCAAGGAAACCTCCTTTTTAGTATAGGAA  749

seq1  GCATAGGGGCTTCGGTCGAGCGCCCCCCCCCCCAATCACCAGACACAGAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGGGCTTCGGTCGAGCGCCCCCCCCCCCAATCACCAGACACAGAG  799

seq1  CACACAGCAGGGTTTATGGCGCATTCATACTACAAACACTTCTTTCCTCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCAGGGTTTATGGCGCATTCATACTACAAACACTTCTTTCCTCC  849

seq1  CAGAAGAATTC  851
      |||||||||||
seq2  CAGAAGAATTC  860


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