BAC Information

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BAC

Clone NameB6Ng01-303G03
Chromosome6 (Build37)
Map Location 33,264,075 - 33,388,948
singlet/doubletdoublet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303G03.bB6Ng01-303G03.g
ACCGA097196GA097197
length1,121987
definitionB6Ng01-303G03.b B6Ng01-303G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,264,075 - 33,264,727)(33,387,969 - 33,388,948)
sequence
gaattcagaattttttcttgggaaactcttgctacttgaatctttttttt
ttttttttggcttttcgagacagggtttctctgtgtagccctggctgtcc
tggaactcactttgtagaccaggctggcctcgaacttagaaatctgcctg
cctctgcctcctgaatgctgggcttaaaggcatgcgccaccatgcctggc
tttactacttgaatcttattattagttatcagcctgtttttttttttttt
tttcttcttctttttttttcttttttcttttctcatatgtgtgaagactt
tttttctagaatttccttctttttttttaaatttaggatttcaaagaatt
ctataatcatttttttcaggattttattggtatctgtggtaatgtcttgt
tttgctcctaattatatttctttgagtttttttttaaatctttttttttc
tataactaactgtgtctcattgcttcttaatgtttatactttagtctcca
cgtcattaatttttgcactgttctttattttttctgtctacctatttcag
gattggtttattctcctgtttctaaggccttaaggtgtgtttttggcatt
tgctttgttgtctctcttactttttaatgtaagatcacatagctataaac
catcctcttataactgctttaatgtattgcaaaggatttgctaagttgtg
gttttgtttcctgttgattctaggaatttaaatttttctctctgatttct
tcaatatctcatgattattcaagaatgtattaattaatcgctatgtgttt
aaatcgtttctcttattattggcttctaggtttttccactatgatcttat
tagatacaagaacttattctgtatttgttaataatgttttttggtggatc
tgtctggtgttctattttgagaaccttcttataagccaggttcttgcttt
tactattcctagtttctttagggcttttctctcatgggaggaaaggccta
ttaaagagaggtctctataaacctggcgtgacctcggaaatcttgttttc
cattttttcctttaactgtgttggatggaacaaacctgtgagatattctg
ttagtgccatttggcctctat
gaattcactaagatggtaattaagaaaaaagtaaaaacttttggattgtt
tctgtattaaaaacaaaggttgttttttggcacttgggccttttcaagga
taacatatttcatttcctttaatttcatataaaattctctagaaacactt
ggaaagtttcacttttcttgattttgtataaaactcctaaaaagaagctt
taaaaatgtactcagagttatagacagtctgatagccattccaaaacagc
cactttacctgacagaaggcaacgggatacaaaaataaaatatgttcact
tcctacaaattgctctaggcagtttcagctagtaaatgtgtggctgtgga
gggtggggaagggtcccaccttttcagagctggctcatcacagcatgcta
gctctccactctgtgatacctacttgaaaagagaattctttggcctctgt
ggtttcttcttggcaaaaaaggctgcgaactctcgtccagtactggcata
gcttagttgggctgatggctctgaggcggtgcgtgtgttcttcatatcca
agtactcagtcaacagcatctatataagcacaatgaggagttcaatttat
tgtacgtcatcctagacttccagaatatattaacctagatgttcattctt
ctactcaaagatataagaaaagctttattacaaccataaaataatatccc
tgttagcaattcacagggaacgtgagtttataggcattggaatatgccag
gtagcatgctgagtgaattcgtcaaaatccatctttacttagcatgtaat
cctcattattccaaagtacaaacagcattagcagcaatggcctaatattt
actgaagcacttactgtgctctaggcaagacattatctgtttagatgtat
ttagggtgtgggttcagaaaggttcagaaagcgtagtggtcccttggtga
ataattgacaggaacccatgctgagacctcttcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33264075_33264727
seq2: B6Ng01-303G03.b_486_1166

seq1  TTTTTTTTTCTATAACTAACTGTGTCTCATTGCTTCTTAATGTTTATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTATAACTAACTGTGTCTCATTGCTTCTTAATGTTTATACT  50

seq1  TTAGTCTCCACGTCATTAATTTTTGCACTGTTCTTTATTTTTTCTGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCCACGTCATTAATTTTTGCACTGTTCTTTATTTTTTCTGTCTA  100

seq1  CCTATTTCAGGATTGGTTTATTCTCCTGTTTCTAAGGCCTTAAGGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCAGGATTGGTTTATTCTCCTGTTTCTAAGGCCTTAAGGTGTGT  150

seq1  TTTTGGCATTTGCTTTGTTGTCTCTCTTACTTTTTAATGTAAGATCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCATTTGCTTTGTTGTCTCTCTTACTTTTTAATGTAAGATCACAT  200

seq1  AGCTATAAACCATCCTCTTATAACTGCTTTAATGTATTGCAAAGGATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAAACCATCCTCTTATAACTGCTTTAATGTATTGCAAAGGATTTG  250

seq1  CTAAGTTGTGGTTTTGTTTCCTGTTGATTCTAGGAATTTAAATTTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTGTGGTTTTGTTTCCTGTTGATTCTAGGAATTTAAATTTTTCTC  300

seq1  TCTGATTTCTTCAATATCTCATGATTATTCAAGAATGTATTAATTAATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTCTTCAATATCTCATGATTATTCAAGAATGTATTAATTAATCG  350

seq1  CTATGTGTTTAAATCGTTTCTCTTATTATTGGCTTCTAGGTTTTTCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTTTAAATCGTTTCTCTTATTATTGGCTTCTAGGTTTTTCCACT  400

seq1  ATGATCTTATTAGATACAAGAACTTATTCTGTATTTGTTAATAATGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTATTAGATACAAGAACTTATTCTGTATTTGTTAATAATGTTTT  450

seq1  T--GTGGATCTGTCT-GTGTTCTATTTTGAAGAACCTTC-TATAAGCCA-  495
      |  |||||||||||| ||||||||||||| ||||||||| ||||||||| 
seq2  TTGGTGGATCTGTCTGGTGTTCTATTTTG-AGAACCTTCTTATAAGCCAG  499

seq1  GTTCTTGCTTTTACTATTCCTAGTTTCTTTAGGGCTTT--TCTCAT-GGA  542
      ||||||||||||||||||||||||||||||||||||||  |||||| |||
seq2  GTTCTTGCTTTTACTATTCCTAGTTTCTTTAGGGCTTTTCTCTCATGGGA  549

seq1  GGAAAAGCCTA-TAAAGAG-----TCTATAAA-CTG--CTGA-CTCG--A  580
      ||||| ||||| |||||||     |||||||| |||   ||| ||||  |
seq2  GGAAAGGCCTATTAAAGAGAGGTCTCTATAAACCTGGCGTGACCTCGGAA  599

seq1  ATC-TGTTTTCCATTTTT--CCTTAAC--TGTTGGATGGAACAAAACTGT  625
      ||| ||||||||||||||  | |||||  |||||||||||||||| ||||
seq2  ATCTTGTTTTCCATTTTTTCCTTTAACTGTGTTGGATGGAACAAACCTGT  649

seq1  -AGATA-TCTGTTAAGTG-CATTTG--CTCTAT  653
       ||||| |||||| |||| ||||||  ||||||
seq2  GAGATATTCTGTT-AGTGCCATTTGGCCTCTAT  681

seq1: chr6_33387969_33388948
seq2: B6Ng01-303G03.g_63_1049 (reverse)

seq1  TGATGAAG-GGTCTCAGCATGGG-TCCTGTCATTAATTCACC-AGGGACC  47
      |||||||| |||||||||||||| |||||||| | ||||||| |||||||
seq2  TGATGAAGAGGTCTCAGCATGGGTTCCTGTCAATTATTCACCAAGGGACC  50

seq1  ACTTCGC-TTCTGAACCTTTCTGAACCCACACCCT-AATACATCTAAACA  95
      ||| ||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTACGCTTTCTGAACCTTTCTGAACCCACACCCTAAATACATCTAAACA  100

seq1  GATAATGTCTTGCCTAGAGCACAGTAAGTGC-TCAGTAAATATTAGGCCA  144
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GATAATGTCTTGCCTAGAGCACAGTAAGTGCTTCAGTAAATATTAGGCCA  150

seq1  TTGCTGCTAATGCTG-TTGTACTTTGGAATAATGAGGATTACATGCTAAG  193
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTAATGCTGTTTGTACTTTGGAATAATGAGGATTACATGCTAAG  200

seq1  TAAAGATGGATTTTGACGAATTCACTCAGCATGCTACCTGGCATATTCCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGGATTTTGACGAATTCACTCAGCATGCTACCTGGCATATTCCA  250

seq1  ATGCCTATAAACTCACGTTCCCTGTGAATTGCTAACAGGGATATTATTTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTATAAACTCACGTTCCCTGTGAATTGCTAACAGGGATATTATTTT  300

seq1  ATGGTTGTAATAAAGCTTTTCTTATATCTTTGAGTAGAAGAATGAACATC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTAATAAAGCTTTTCTTATATCTTTGAGTAGAAGAATGAACATC  350

seq1  TAGGTTAATATATTCTGGAAGTCTAGGATGACGTACAATAAATTGAACTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAATATATTCTGGAAGTCTAGGATGACGTACAATAAATTGAACTC  400

seq1  CTCATTGTGCTTATATAGATGCTGTTGACTGAGTACTTGGATATGAAGAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGTGCTTATATAGATGCTGTTGACTGAGTACTTGGATATGAAGAA  450

seq1  CACACGCACCGCCTCAGAGCCATCAGCCCAACTAAGCTATGCCAGTACTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCACCGCCTCAGAGCCATCAGCCCAACTAAGCTATGCCAGTACTG  500

seq1  GACGAGAGTTCGCAGCCTTTTTTGCCAAGAAGAAACCACAGAGGCCAAAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGAGTTCGCAGCCTTTTTTGCCAAGAAGAAACCACAGAGGCCAAAG  550

seq1  AATTCTCTTTTCAAGTAGGTATCACAGAGTGGAGAGCTAGCATGCTGTGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTTTTCAAGTAGGTATCACAGAGTGGAGAGCTAGCATGCTGTGA  600

seq1  TGAGCCAGCTCTGAAAAGGTGGGACCCTTCCCCACCCTCCACAGCCACAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGCTCTGAAAAGGTGGGACCCTTCCCCACCCTCCACAGCCACAC  650

seq1  ATTTACTAGCTGAAACTGCCTAGAGCAATTTGTAGGAAGTGAACATATTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTAGCTGAAACTGCCTAGAGCAATTTGTAGGAAGTGAACATATTT  700

seq1  TATTTTTGTATCCCGTTGCCTTCTGTCAGGTAAAGTGGCTGTTTTGGAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTATCCCGTTGCCTTCTGTCAGGTAAAGTGGCTGTTTTGGAAT  750

seq1  GGCTATCAGACTGTCTATAACTCTGAGTACATTTTTAAAGCTTCTTTTTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCAGACTGTCTATAACTCTGAGTACATTTTTAAAGCTTCTTTTTA  800

seq1  GGAGTTTTATACAAAATCAAGAAAAGTGAAACTTTCCAAGTGTTTCTAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTATACAAAATCAAGAAAAGTGAAACTTTCCAAGTGTTTCTAGA  850

seq1  GAATTTTATATGAAATTAAAGGAAATGAAATATGTTATCCTTGAAAAGGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTATATGAAATTAAAGGAAATGAAATATGTTATCCTTGAAAAGGC  900

seq1  CCAAGTGCCAAAAAACAACCTTTGTTTTTAATACAGAAACAATCCAAAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCCAAAAAACAACCTTTGTTTTTAATACAGAAACAATCCAAAAG  950

seq1  TTTTTACTTTTTTCTTAATTACCATCTTAGTGAATTC  980
      |||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTTTTTCTTAATTACCATCTTAGTGAATTC  987