BAC Information

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BAC

Clone NameB6Ng01-305L14
Chromosome6 (Build37)
Map Location 55,038,232 - 55,200,916
singlet/doubletdoublet
Overlap geneCrhr2, Inmt, C330043M08Rik
Upstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars
Downstream geneAqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305L14.bB6Ng01-305L14.g
ACCGA098942GA098943
length1,0231,054
definitionB6Ng01-305L14.b B6Ng01-305L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,038,232 - 55,039,061)(55,199,859 - 55,200,916)
sequence
gaattcagctctcactgctcctccagctaggtagggagacttcgtagggc
atgcatgacttttgtccctagagaaacccaagcctaggtgtttctgccac
ctacctccccaatgacaagagaagcagaggcacagctttgcccatggcac
tctctagagcactgccgagtgggaaccacctcttcgccaactcccaccat
tatctgatacatgagtcggggagccgtcgcagaagatatgccgtctgggg
acgcaaagcttatcttgggatcattttcagctcattctttcagtccgcta
taaaaagggcttaagaggcggcagatagagtgtttttgatgatagatcgc
cgtgcaatttgggacatacatctcagaagcatcatatagatgttagtggt
gtgcctacagctgcttgtctatttgaaaagccccagcacacgcagctgta
aaaaaggaaagacggaaagaaggaaggaaagaagttgatcctgaattccg
actcattcttgttgtaaaatgcatccgtggattccggaacaattagactt
ccatgcacttgtttgaggtgtgattcccatataatttccatcctaggctt
aacaattacttataaaaactgtctataattgccaatatctagggctggca
agatggctcagcaggtaatagtgcttgccctaaagcaagatgatgtgggt
cttctgtattagttagggttttactgctgtgaacagacaccatgaccaag
gcaagtcttataaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaa
aacaaaaccaacatttaattgggctggcttagctgggaaggatcttgccc
caaattccactcccttattctgttatctcctagaacacaggatttttgct
ccatttcactttcctggtacccgtttaatactcgaaccatatatttttat
atttttcctttctaagccttgttattgcttgttcaaaacttctcttaatg
taaaatgcacttagtccactttt
gaattcactgtcccctgaaaaggagtcgccgaagggaagagcgaacagaa
ggcgagaaaatactaaaaaggaagttgctaggaatttccagcctccacaa
gacacgtaaacataagcgtacatctaggtgtgttgcgctgagacggtcag
aaggccagagaactagaaaggccttagagaaaagctagattgcctagaga
caacttgaacaaaagacttctcagtaaaggcggaaagacaccttcagatt
agagaaaaacaaccactgaatgggaattttcattatcattaaaaattgtc
attaaagataagccaaagacagtcccaggcaaaaacagctagttgattct
cacagaccttcactgagtaaatgactgaagggcctgtttcaggaaaaaaa
gaaaagagaactatggtaagagactggaaaacatttaagtagaactaaat
ggtaatggtcgataaaaagcaataaaaggagtaatgaccacacccatggg
gaacagtaaagacagagacacggggacagacaagagacagcagagaggga
aagtggtcaccaggctaaatcttctccctcctgacaagtagattgatcag
tcttgagctgtcaagccagtcataataaagatataagagtagtcatggag
tgtgttataacctgctatgtagtcttcaaaccaaagggggcggccgtcag
ggaattccaacaaacctgccaccaggaagcagccaggaggcttcttggta
agcttaggttgagcatctgactctgcagtggtagtcctaggccaaagaac
tgaagacaggacctggacacgcacaggaatgtccacacagcattacagta
gccctggagcagaagttacctaaatgcctatcagtaactacttggagaaa
cagtggaacactagttcaccacataaaggaatggtcctgacaggccaccg
tgccattgacccctcctctacagtcctcaaaaaaagacattagtaatgct
aaagcaccgaagtcacacatacccccacaaaacacatttgtgtgaattca
cact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_55038232_55039061
seq2: B6Ng01-305L14.b_48_876

seq1  GAATTCAGCTCTCACTGCTCCTCCAGCTAGGTAGGGAGACTTCGTAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCTCACTGCTCCTCCAGCTAGGTAGGGAGACTTCGTAGGGC  50

seq1  ATGCATGACTTTTGTCCCTAGAGAAACCCAAGCCTAGGTGTTTCTGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGACTTTTGTCCCTAGAGAAACCCAAGCCTAGGTGTTTCTGCCAC  100

seq1  CTACCTCCCCAATGACAAGAGAAGCAGAGGCACAGCTTTGCCCATGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCCCAATGACAAGAGAAGCAGAGGCACAGCTTTGCCCATGGCAC  150

seq1  TCTCTAGAGCACTGCCGAGTGGGAACCACCTCTTCGCCAACTCCCACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAGCACTGCCGAGTGGGAACCACCTCTTCGCCAACTCCCACCAT  200

seq1  TATCTGATACATGAGTCGGGGAGCCGTCGCAGAAGATATGCCGTCTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATACATGAGTCGGGGAGCCGTCGCAGAAGATATGCCGTCTGGGG  250

seq1  ACGCAAAGCTTATCTTGGGATCATTTTCAGCTCATTCTTTCAGTCCGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAAGCTTATCTTGGGATCATTTTCAGCTCATTCTTTCAGTCCGCTA  300

seq1  TAAAAAGGGCTTAAGAGGCGGCAGATAGAGTGTTTTTGATGATAGATCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGGCTTAAGAGGCGGCAGATAGAGTGTTTTTGATGATAGATCGC  350

seq1  CGTGCAATTTGGGACATACATCTCAGAAGCATCATATAGATGTTAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCAATTTGGGACATACATCTCAGAAGCATCATATAGATGTTAGTGGT  400

seq1  GTGCCTACAGCTGCTTGTCTATTTGAAAAGCCCCAGCACACGCAGCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTACAGCTGCTTGTCTATTTGAAAAGCCCCAGCACACGCAGCTGTA  450

seq1  AAAAAGGAAAGACGGAAAGAAGGAAGGAAAGAAGTTGATCCTGAATTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAAGACGGAAAGAAGGAAGGAAAGAAGTTGATCCTGAATTCCG  500

seq1  ACTCATTCTTGTTGTAAAATGCATCCGTGGATTCCGGAACAATTAGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCTTGTTGTAAAATGCATCCGTGGATTCCGGAACAATTAGACTT  550

seq1  CCATGCACTTGTTTGAGGTGTGATTCCCATATAATTTCCATCCTAGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACTTGTTTGAGGTGTGATTCCCATATAATTTCCATCCTAGGCTT  600

seq1  AACAATTACTTATAAAAACTGTCTATAATTGCCAATATCTAGGGCTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTACTTATAAAAACTGTCTATAATTGCCAATATCTAGGGCTGGCA  650

seq1  AGATGGCTCAGCAGGTAATAGTGCTTGCCCTAAAGCAAGATGATGTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGCAGGTAATAGTGCTTGCCCTAAAGCAAGATGATGTGGGT  700

seq1  CTTCTGTATTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTATTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAG  750

seq1  GCAAGTCTTATAAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCTTATAAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAA  800

seq1  AACAAAACCAACATTTAATTGGGGCTGGCT  830
      |||||||||||||||||||| |||||||||
seq2  AACAAAACCAACATTTAATT-GGGCTGGCT  829

seq1: chr6_55199859_55200916
seq2: B6Ng01-305L14.g_72_1125 (reverse)

seq1  AGTGTGATATTTCACACAAATGTG-TTTGT-GGGGTATGTGTGACCTTTG  48
      ||||||  | |||||||||||||| ||||| ||||||||||||| ||| |
seq2  AGTGTG--AATTCACACAAATGTGTTTTGTGGGGGTATGTGTGA-CTTCG  47

seq1  GTGCCTTTAGCATTACTAATGTCTTTTTTTGGAGGACTGTAGAGGA-GGG  97
      ||| |||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GTG-CTTTAGCATTACTAATGTCTTTTTTT-GAGGACTGTAGAGGAGGGG  95

seq1  TCAATGGCACGGTGGCCTGTTCAGGACCCATTCCTTTATGTGGTGGACTA  147
      ||||||||||||||||||| |||||| |||||||||||||||||| ||||
seq2  TCAATGGCACGGTGGCCTG-TCAGGA-CCATTCCTTTATGTGGTGAACTA  143

seq1  GTGTTCCACTGTTTCTCCAAGTAGTTACTGATAGGCATTTAGGTAACTTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCACTGTTTCTCCAAGTAGTTACTGATAGGCATTTAGGTAACTTC  193

seq1  TGCTCCAGGGCTACTGTAATGCTGTGTGGACATTCCTGTGCGTGTCCAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGGGCTACTGTAATGCTGTGTGGACATTCCTGTGCGTGTCCAGG  243

seq1  TCCTGTCTTCAGTTCTTTGGCCTAGGACTACCACTGCAGAGTCAGATGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTTCAGTTCTTTGGCCTAGGACTACCACTGCAGAGTCAGATGCT  293

seq1  CAACCTAAGCTTACCAAGAAGCCTCCTGGCTGCTTCCTGGTGGCAGGTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAAGCTTACCAAGAAGCCTCCTGGCTGCTTCCTGGTGGCAGGTTT  343

seq1  GTTGGAATTCCCTGACGGCCGCCCCCTTTGGTTTGAAGACTACATAGCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAATTCCCTGACGGCCGCCCCCTTTGGTTTGAAGACTACATAGCAG  393

seq1  GTTATAACACACTCCATGACTACTCTTATATCTTTATTATGACTGGCTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAACACACTCCATGACTACTCTTATATCTTTATTATGACTGGCTTG  443

seq1  ACAGCTCAAGACTGATCAATCTACTTGTCAGGAGGGAGAAGATTTAGCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCAAGACTGATCAATCTACTTGTCAGGAGGGAGAAGATTTAGCCT  493

seq1  GGTGACCACTTTCCCTCTCTGCTGTCTCTTGTCTGTCCCCGTGTCTCTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCACTTTCCCTCTCTGCTGTCTCTTGTCTGTCCCCGTGTCTCTGT  543

seq1  CTTTACTGTTCCCCATGGGTGTGGTCATTACTCCTTTTATTGCTTTTTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTGTTCCCCATGGGTGTGGTCATTACTCCTTTTATTGCTTTTTAT  593

seq1  CGACCATTACCATTTAGTTCTACTTAAATGTTTTCCAGTCTCTTACCATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCATTACCATTTAGTTCTACTTAAATGTTTTCCAGTCTCTTACCATA  643

seq1  GTTCTCTTTTCTTTTTTTCCTGAAACAGGCCCTTCAGTCATTTACTCAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTTTCTTTTTTTCCTGAAACAGGCCCTTCAGTCATTTACTCAGT  693

seq1  GAAGGTCTGTGAGAATCAACTAGCTGTTTTTGCCTGGGACTGTCTTTGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTGTGAGAATCAACTAGCTGTTTTTGCCTGGGACTGTCTTTGGC  743

seq1  TTATCTTTAATGACAATTTTTAATGATAATGAAAATTCCCATTCAGTGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTAATGACAATTTTTAATGATAATGAAAATTCCCATTCAGTGGT  793

seq1  TGTTTTTCTCTAATCTGAAGGTGTCTTTCCGCCTTTACTGAGAAGTCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTCTAATCTGAAGGTGTCTTTCCGCCTTTACTGAGAAGTCTTT  843

seq1  TGTTCAAGTTGTCTCTAGGCAATCTAGCTTTTCTCTAAGGCCTTTCTAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAGTTGTCTCTAGGCAATCTAGCTTTTCTCTAAGGCCTTTCTAGT  893

seq1  TCTCTGGCCTTCTGACCGTCTCAGCGCAACACACCTAGATGTACGCTTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCCTTCTGACCGTCTCAGCGCAACACACCTAGATGTACGCTTAT  943

seq1  GTTTACGTGTCTTGTGGAGGCTGGAAATTCCTAGCAACTTCCTTTTTAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACGTGTCTTGTGGAGGCTGGAAATTCCTAGCAACTTCCTTTTTAGT  993

seq1  ATTTTCTCGCCTTCTGTTCGCTCTTCCCTTCGGCGACTCCTTTTCAGGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCGCCTTCTGTTCGCTCTTCCCTTCGGCGACTCCTTTTCAGGGG  1043

seq1  ACAGTGAATTC  1058
      |||||||||||
seq2  ACAGTGAATTC  1054