BAC Information

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BAC

Clone NameB6Ng01-307K13
Chromosome6 (Build37)
Map Location 71,151,692 - 71,152,788
singlet/doubletsinglet
Overlap geneFabp1
Upstream geneIgk, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2
Downstream geneSmyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307K13.bB6Ng01-307K13.g
ACCGA100371GA100372
length1,093107
definitionB6Ng01-307K13.b B6Ng01-307K13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattttacttcggtggttactgagtctttctttcttcctttctct
cttccttccttcctttccttctttctttctttctttctttctttctttct
ttctttctttctttctttctattgtagtgccaattccaagctgtatacat
caaggacagtagtaaatagaatcatggctgggcacagtactttaaggctt
tccagcactcgtgaggcaggagcatgctgggtttgaggctagtatgggct
acatggcaaaatgctaaaggggggaaaagaatgaaaggaaaggaagtaag
agagggatggaggggagaatcctaatcaagagcaaaagacatcaaatatc
tgcttctacagtggacattgaaaaagggctgtagtaaaactgacacccca
acccttgtcatgaaccaatcaggagaaaccccgccctcccttctctttga
cttgtaaaagaggcagaaataagagcaaccagaagtgataaagagactct
tgttgaatttgaggcacaaagcttcctggaaagggcagggacagagaaca
gaagcacattacactcgctaccctaggctgtgcaggactcagacgggggc
aggggcggggatgacaggacccacagcctctggatctctctatcacctgt
ccattagtcacacagcccacagacagctggcattgctgcctggaaccatc
tcccagcggacgtaaagctgccctagctcagatgaaggttttcactgaca
ccaatgtgccccagttctaggctttccttgaaaggactctgagagccagg
agcactgtgcctgggagacctgagactgaggctccttctctgtgctccat
tatccccacatcctcctccattgtgagagcccagatgcccacgatccctg
agacaatgagaagtctactctcaaagctctctgtgtctcctgcctgaagt
agtttcagtgacatggtctccgttagagagtctggaaagagatggagtga
ctacataccctgacttttttccccagtcatgggtctcaagttcgcaactc
ctcccccagggtgactcattggcgacactttggttccaatagg
caggctagcccgggctacacaatgagacccggtttcaaaaaacaaaaaag
gaaaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_71151692_71152788
seq2: B6Ng01-307K13.b_44_1136 (reverse)

seq1  CCTA-TGGACCCAAAGTGGTCCGCAATGAGTTCACCCTGGGGGAGGAG-T  48
      |||| |||| ||||||| |||  ||||||| ||||||||||||||||| |
seq2  CCTATTGGAACCAAAGT-GTCGCCAATGAG-TCACCCTGGGGGAGGAGTT  48

seq1  GCGAACTGGAGA-CCATGACTGGGG-AAAAAGTCAAGGTATGTAGTTCCA  96
      ||||||| |||| |||||||||||| ||||||||| ||||||||||  ||
seq2  GCGAACTTGAGACCCATGACTGGGGAAAAAAGTCAGGGTATGTAGT--CA  96

seq1  CCTCCATCTCTTTCCCAGAACTTCTC-CTAACGGAGACCATGTCACTGAA  145
       |||||||||||| |||||    ||| |||||||||||||||||||||||
seq2  -CTCCATCTCTTT-CCAGA----CTCTCTAACGGAGACCATGTCACTGAA  140

seq1  ACTACTTCAGGCAGGAGACACAGAGAGCTTTGAGAGTAGACTTCTCATTG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTCAGGCAGGAGACACAGAGAGCTTTGAGAGTAGACTTCTCATTG  190

seq1  TCTCAGGGATCGTGGGCATCTGGGCTCTCACAATGGAGGAGGATGTGGGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGATCGTGGGCATCTGGGCTCTCACAATGGAGGAGGATGTGGGG  240

seq1  ATAATGGAGCACAGAGAAGGAGCCTCAGTCTCAGGTCTCCCAGGCACAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAGCACAGAGAAGGAGCCTCAGTCTCAGGTCTCCCAGGCACAGT  290

seq1  GCTCCTGGCTCTCAGAGTCC-TTCAAGGAAAGCCTAGAACTGGGGCACAT  344
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCTCCTGGCTCTCAGAGTCCTTTCAAGGAAAGCCTAGAACTGGGGCACAT  340

seq1  TGGTGTCAGTGAAAACCTTCATCTGAGCTAGGGCAGCTTTACGTCCGCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCAGTGAAAACCTTCATCTGAGCTAGGGCAGCTTTACGTCCGCTG  390

seq1  GGAGATGGTTCCAGGCAGCAATGCCAGCTGTCTGTGGGCTGTGTGACTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGTTCCAGGCAGCAATGCCAGCTGTCTGTGGGCTGTGTGACTAA  440

seq1  TGGACAGGTGATAGAGAGATCCAGAGGCTGTGGGTCCTGTCATCCCCGCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGTGATAGAGAGATCCAGAGGCTGTGGGTCCTGTCATCCCCGCC  490

seq1  CCTGCCCCCGTCTGAGTCCTGCACAGCCTAGGGTAGCGAGTGTAATGTGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCCGTCTGAGTCCTGCACAGCCTAGGGTAGCGAGTGTAATGTGC  540

seq1  TTCTGTTCTCTGTCCCTGCCCTTTCCAGGAAGCTTTGTGCCTCAAATTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTCTGTCCCTGCCCTTTCCAGGAAGCTTTGTGCCTCAAATTCA  590

seq1  ACAAGAGTCTCTTTATCACTTCTGGTTGCTCTTATTTCTGCCTCTTTTAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTCTCTTTATCACTTCTGGTTGCTCTTATTTCTGCCTCTTTTAC  640

seq1  AAGTCAAAGAGAAGGGAGGGCGGGGTTTCTCCTGATTGGTTCATGACAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAAGAGAAGGGAGGGCGGGGTTTCTCCTGATTGGTTCATGACAAG  690

seq1  GGTTGGGGTGTCAGTTTTACTACAGCCCTTTTTCAATGTCCACTGTAGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGGTGTCAGTTTTACTACAGCCCTTTTTCAATGTCCACTGTAGAA  740

seq1  GCAGATATTTGATGTCTTTTGCTCTTGATTAGGATTCTCCCCTCCATCCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATATTTGATGTCTTTTGCTCTTGATTAGGATTCTCCCCTCCATCCC  790

seq1  TCTCTTACTTCCTTTCCTTTCATTCTTTTCCCCCCTTTAGCATTTTGCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACTTCCTTTCCTTTCATTCTTTTCCCCCCTTTAGCATTTTGCCA  840

seq1  TGTAGCCCATACTAGCCTCAAACCCAGCATGCTCCTGCCTCACGAGTGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCATACTAGCCTCAAACCCAGCATGCTCCTGCCTCACGAGTGCT  890

seq1  GGAAAGCCTTAAAGTACTGTGCCCAGCCATGATTCTATTTACTACTGTCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCTTAAAGTACTGTGCCCAGCCATGATTCTATTTACTACTGTCC  940

seq1  TTGATGTATACAGCTTGGAATTGGCACTACAATAGAAAGAAAGAAAGAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTATACAGCTTGGAATTGGCACTACAATAGAAAGAAAGAAAGAAA  990

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGGAAGGAAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGGAAGGAAGG  1040

seq1  AAGAGAGAAAGGAAGAAAGAAAGACTCAGTAACCACCGAAGTAAAATGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAAAGGAAGAAAGAAAGACTCAGTAACCACCGAAGTAAAATGAA  1090

seq1  TTC  1097
      |||
seq2  TTC  1093