BAC Information

Click to search

BAC

Clone NameB6Ng01-309D02
Chromosome6 (Build37)
Map Location 146,847,496 - 146,863,384
singlet/doubletdoublet
Overlap genePpfibp1
Upstream geneSspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik
Downstream gene1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309D02.bB6Ng01-309D02.g
ACCGA101494GA101495
length1,1011,072
definitionB6Ng01-309D02.b B6Ng01-309D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,847,496 - 146,848,610)(146,862,313 - 146,863,384)
sequence
gaattctagagaactcttctttaagtggggttgaagaaagcactcagtga
aatggaggaaaatataatgggaagggctaagtgttgagtgagttctctgc
aggccatcttccatacagtaggaagcagtgaaaggaaattcatagacaag
ttgccctggctccagaggagctggctctggggattattgttcaagaggaa
aaactcgaaataatgacaggagtctctcatctaaacaatacggagtgaca
tatttaccaggatgtgtcttgaggcagtcagttaatttattgaagtggaa
agcagtgttagcaaagagaaaaaaaaaatcagacaaaggaaaacttgact
tgtttggaggaggaatttttagacaaccagacttaatggcttaatggttc
acaggctagcttcttggggaaacttgagcattccaattggtgagaaacag
ctggttttggtgccacattcagttactggttaaagcagagcttccagtac
cccaggaaatgctctatagagaggtgttgtgacgcagaggccattgcgtt
acatgctagttttgataaggttgttgttaatctttattttaactagttat
ttctagtcagagcttttgctgaaaagacattgggttgtggttttctagaa
gattcgttgtggtgatgacatcaggataatgaagcagaagactaaagcag
tccagtgaataagagtgtggtccactgatgtccccttaggattggctttg
cattttgctgtttcagttatcagcagtcagccatcgtccagctgaaacca
gagattccagaaataaacacttccaaatcatgcgccattcttagtagcat
gatgaaaccttttccctctcccccatttgcctggggcatgaaatcatcct
tttgtcctgagtattcatgctacctgcctgtctttactatggcttacatc
agagtgctcacacaggtatcctgaggtggagacacatggggataggtatg
tgttctacagtctttataaatttagcagcatttgtctggattttacttac
tgaattaagattagaaagtctgtctctgtggccttcacttgatgaagatg
a
gaattcccaattcccataacctaacctcccagcaggctctacgacaaaat
ctacacagctggaatttggcttttgtccctttctggtcattgctgtgaca
gtggctgtctggagatactgaaaagccaattttccattctatgacagcaa
atattatcactggcagagagcagaaacagtgctcaaagatccaggttggg
cagttcttgttttgtaaaatatttatgtttcattgacatatagatatgga
tgctgctgatctttgttacgcttcgtggctaaaggaaatacttaaaacca
tttacatgtatttcagaaattaatttaaagttaaactgtgagaaattaaa
agcctgcagtaaagctcttgtttttccagattttaaaattggcctatcaa
ccataaaaagattactcaaaaccagcatattatgccaacaaaatagttca
ctccattatcaacagatgtcttcaggaagcagctttagtcactaagcaag
ttgctaattccaaagtattctgtattaattattcacaattcaacttaagc
ttcacaattaagtctgaaatattataagtttaacactaacaagtaattgc
ttttcctacatacgtgaatgtaagcatatattacatacacataaaataca
gcacttaatataaaatgtgagctactgttctatgtaaagaaaggccttaa
acaaaaatatgcttggtatctgatcaggcaaacaagcataaagcaggggc
tcttgctccccaaaattacttctcaaaacacttgagtccttagaaattca
agctcactaacagagtttaattctgggtcaccaatccctgagctgttcca
gagccaagcaattgttcctctgcagagaaaggggaagagttgagtcaaaa
taacttttaccttcaatcctgatttatgatttcctccacacaccaaaaaa
aaaaaaagcatgggtatttggccaagcaaaggctcagctttcacattaaa
aaaaaaaaaaggtagcatccttttttgcatatatatcactgctatttaat
ctactcaataaattcaaggcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_146847496_146848610
seq2: B6Ng01-309D02.b_46_1146

seq1  GAATTCTAGAGAACTCTTCTTTAAGTGGGGTTGAAGAAAGCACTCAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGAACTCTTCTTTAAGTGGGGTTGAAGAAAGCACTCAGTGA  50

seq1  AATGGAGGAAAATATAATGGGAAGGGCTAAGTGTTGAGTGAGTTCTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGAAAATATAATGGGAAGGGCTAAGTGTTGAGTGAGTTCTCTGC  100

seq1  AGGCCATCTTCCATACAGTAGGAAGCAGTGAAAGGAAATTCATAGACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCTTCCATACAGTAGGAAGCAGTGAAAGGAAATTCATAGACAAG  150

seq1  TTGCCCTGGCTCCAGAGGAGCTGGCTCTGGGGATTATTGTTCAAGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGGCTCCAGAGGAGCTGGCTCTGGGGATTATTGTTCAAGAGGAA  200

seq1  AAACTCGAAATAATGACAGGAGTCTCTCATCTAAACAATACGGAGTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGAAATAATGACAGGAGTCTCTCATCTAAACAATACGGAGTGACA  250

seq1  TATTTACCAGGATGTGTCTTGAGGCAGTCAGTTAATTTATTGAAGTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCAGGATGTGTCTTGAGGCAGTCAGTTAATTTATTGAAGTGGAA  300

seq1  AGCAGTGTTAGCAAAGAGAAAAAAAAAATCAGACAAAGGAAAACTTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTTAGCAAAGAGAAAAAAAAAATCAGACAAAGGAAAACTTGACT  350

seq1  TGTTTGGAGGAGGAATTTTTAGACAACCAGACTTAATGGCTTAATGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGAGGAGGAATTTTTAGACAACCAGACTTAATGGCTTAATGGTTC  400

seq1  ACAGGCTAGCTTCTTGGGGAAACTTGAGCATTCCAATTGGTGAGAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTAGCTTCTTGGGGAAACTTGAGCATTCCAATTGGTGAGAAACAG  450

seq1  CTGGTTTTGGTGCCACATTCAGTTACTGGTTAAAGCAGAGCTTCCAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGGTGCCACATTCAGTTACTGGTTAAAGCAGAGCTTCCAGTAC  500

seq1  CCCAGGAAATGCTCTATAGAGAGGTGTTGTGACGCAGAGGCCATTGCGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAATGCTCTATAGAGAGGTGTTGTGACGCAGAGGCCATTGCGTT  550

seq1  ACATGCTAGTTTTGATAAGGTTGTTGTTAATCTTTATTTTAACTAGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTAGTTTTGATAAGGTTGTTGTTAATCTTTATTTTAACTAGTTAT  600

seq1  TTCTAGTCAGAGCTTTTGCTGAAAAGACATTGGGTTGTGGTTTTCTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCAGAGCTTTTGCTGAAAAGACATTGGGTTGTGGTTTTCTAGAA  650

seq1  GATTCGTTGTGGTGATGACATCAGGATAATGAAGCAGAAGACTAAAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGTTGTGGTGATGACATCAGGATAATGAAGCAGAAGACTAAAGCAG  700

seq1  TCCAGTGAATAAGAGTGTGGTCCACTGATGTCCCCTTAGGATTGGCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGAATAAGAGTGTGGTCCACTGATGTCCCCTTAGGATTGGCTTTG  750

seq1  CATTTTGCTGTTTCAGTTATCAGCAGTCAGCCATCGTCCAGCTGAAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTGTTTCAGTTATCAGCAGTCAGCCATCGTCCAGCTGAAACCA  800

seq1  GAGATTCCAGAAATAAACACTTCCAAATCATGCGCCATTCTTAGTAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCCAGAAATAAACACTTCCAAATCATGCGCCATTCTTAGTAGCAT  850

seq1  GATGAAACC-TTTCCCTCTCCCCCATTTGCCTGGGGCATG-AATCATCCT  898
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  GATGAAACCTTTTCCCTCTCCCCCATTTGCCTGGGGCATGAAATCATCCT  900

seq1  TTTGTCCTGAGTATTCATGCTACCTGCCTGTCTTTACTATGGCTTACATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTGAGTATTCATGCTACCTGCCTGTCTTTACTATGGCTTACATC  950

seq1  AGAGTGCTCACACAGGTAATCCTGAGGTGGAGACCACATGGGGATAGGTA  998
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  AGAGTGCTCACACAGGT-ATCCTGAGGTGGAGA-CACATGGGGATAGGTA  998

seq1  TGTGTTCTACAGTCTTTAATAAATTTTAGCCAGCATTTGGTCTGGGAATT  1048
      ||||||||||||||||| ||||| ||||| |||||||| ||||||    |
seq2  TGTGTTCTACAGTCTTT-ATAAA-TTTAG-CAGCATTT-GTCTGG---AT  1041

seq1  TTTACTTACTGAATTAAGATTTAGAAAAGGTCTGTCTCCTGTGGGCCTTC  1098
      ||||||||||||||||||| |||||||  |||||||| |||| |||||||
seq2  TTTACTTACTGAATTAAGA-TTAGAAA--GTCTGTCT-CTGT-GGCCTTC  1086

seq1  ACTTTGATGAAGGATGA  1115
      || |||||||| |||||
seq2  AC-TTGATGAA-GATGA  1101

seq1: chr6_146862313_146863384
seq2: B6Ng01-309D02.g_65_1136 (reverse)

seq1  TTGCTTTGATTTTATTTGAGTAGATTAAATAGCAGTGATTATTATATGCA  50
      |||| |||| |||| ||||||||||||||||||||||||   ||||||||
seq2  TTGCCTTGAATTTA-TTGAGTAGATTAAATAGCAGTGAT--ATATATGCA  47

seq1  AAAAGGATTGCTA-CTTTTTTTTTTTTTAATGTGAAAGCTGAGCC-TTGC  98
      |||| |  ||||| ||||||||||||||||||||||||||||||| ||||
seq2  AAAAAGGATGCTACCTTTTTTTTTTTTTAATGTGAAAGCTGAGCCTTTGC  97

seq1  TTGG-CAAATA-CCATGCTTTTTTTTTTTTTGGTGTGTGGAGGAAATCAT  146
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAAATACCCATGCTTTTTTTTTTTTTGGTGTGTGGAGGAAATCAT  147

seq1  AAATCAGGATTGAAGGTAAAAGTTATTTTGACTCAACTCTTTCCCCTTTC  196
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATCAGGATTGAAGGTAAAAGTTATTTTGACTCAACTC-TTCCCCTTTC  196

seq1  TCTGCAGAGGAACAATTGCTTGGCTCTGGAACAGCTCAGGGATTGGTGAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGGAACAATTGCTTGGCTCTGGAACAGCTCAGGGATTGGTGAC  246

seq1  CCAGAATTAAACTCTGTTAGTGAGCTTGAATTTCTAAGGACTCAAGTGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTAAACTCTGTTAGTGAGCTTGAATTTCTAAGGACTCAAGTGTT  296

seq1  TTGAGAAGTAATTTTGGGGAGCAAGAGCCCCTGCTTTATGCTTGTTTGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAGTAATTTTGGGGAGCAAGAGCCCCTGCTTTATGCTTGTTTGCC  346

seq1  TGATCAGATACCAAGCATATTTTTGTTTAAGGCCTTTCTTTACATAGAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGATACCAAGCATATTTTTGTTTAAGGCCTTTCTTTACATAGAAC  396

seq1  AGTAGCTCACATTTTATATTAAGTGCTGTATTTTATGTGTATGTAATATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTCACATTTTATATTAAGTGCTGTATTTTATGTGTATGTAATATA  446

seq1  TGCTTACATTCACGTATGTAGGAAAAGCAATTACTTGTTAGTGTTAAACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACATTCACGTATGTAGGAAAAGCAATTACTTGTTAGTGTTAAACT  496

seq1  TATAATATTTCAGACTTAATTGTGAAGCTTAAGTTGAATTGTGAATAATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTTCAGACTTAATTGTGAAGCTTAAGTTGAATTGTGAATAATT  546

seq1  AATACAGAATACTTTGGAATTAGCAACTTGCTTAGTGACTAAAGCTGCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAATACTTTGGAATTAGCAACTTGCTTAGTGACTAAAGCTGCTT  596

seq1  CCTGAAGACATCTGTTGATAATGGAGTGAACTATTTTGTTGGCATAATAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGACATCTGTTGATAATGGAGTGAACTATTTTGTTGGCATAATAT  646

seq1  GCTGGTTTTGAGTAATCTTTTTATGGTTGATAGGCCAATTTTAAAATCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTTTGAGTAATCTTTTTATGGTTGATAGGCCAATTTTAAAATCTG  696

seq1  GAAAAACAAGAGCTTTACTGCAGGCTTTTAATTTCTCACAGTTTAACTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAGAGCTTTACTGCAGGCTTTTAATTTCTCACAGTTTAACTTT  746

seq1  AAATTAATTTCTGAAATACATGTAAATGGTTTTAAGTATTTCCTTTAGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTTCTGAAATACATGTAAATGGTTTTAAGTATTTCCTTTAGCC  796

seq1  ACGAAGCGTAACAAAGATCAGCAGCATCCATATCTATATGTCAATGAAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGCGTAACAAAGATCAGCAGCATCCATATCTATATGTCAATGAAAC  846

seq1  ATAAATATTTTACAAAACAAGAACTGCCCAACCTGGATCTTTGAGCACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATTTTACAAAACAAGAACTGCCCAACCTGGATCTTTGAGCACTG  896

seq1  TTTCTGCTCTCTGCCAGTGATAATATTTGCTGTCATAGAATGGAAAATTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTCTCTGCCAGTGATAATATTTGCTGTCATAGAATGGAAAATTG  946

seq1  GCTTTTCAGTATCTCCAGACAGCCACTGTCACAGCAATGACCAGAAAGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCAGTATCTCCAGACAGCCACTGTCACAGCAATGACCAGAAAGGG  996

seq1  ACAAAAGCCAAATTCCAGCTGTGTAGATTTTGTCGTAGAGCCTGCTGGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCCAAATTCCAGCTGTGTAGATTTTGTCGTAGAGCCTGCTGGGA  1046

seq1  GGTTAGGTTATGGGAATTGGGAATTC  1072
      ||||||||||||||||||||||||||
seq2  GGTTAGGTTATGGGAATTGGGAATTC  1072