BAC Information

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BAC

Clone NameB6Ng01-310J07
Chromosome6 (Build37)
Map Location 47,303,900 - 47,452,553
singlet/doubletdoublet
Overlap geneA930035D04Rik, Cul1
Upstream geneCntnap2, Rbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
Downstream geneEzh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310J07.bB6Ng01-310J07.g
ACCGA102519GA102520
length1,1391,174
definitionB6Ng01-310J07.b B6Ng01-310J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,303,900 - 47,305,052)(47,451,371 - 47,452,553)
sequence
gaattccagggtcagctgctatgggaagacaatgagatagctttgcagct
tccagcacctgtgctcctgctcttcctgaggtgagggtgctcacagtctc
tgtgctctaaccagacttaaatgaccccctattgttcatactgacctaat
tcagaaagtcttttcatcctacctccaggtacttactaacaaatggattc
ctgctgctatttgattcttgttatttcatctcctggtcctacgcactagt
cagaaaacttcctggtcatttggataaaataaattgtctttctgttttgc
tgtgccccccattaccccccatccggtgagtaatttggaacaattcctct
tcttagtacctcttcttagtaagagtggtcaaaactatgctagaccattt
ctctatgctgaaagcagaacttgaatggaaacaatagtcagcaaaataaa
tagacatctcagaaagtagcattaagaccaatgaaattgttaacagttca
cttttataacctgcttaaggacaaccagcttagtatattagttacatttg
tatcactgtgaccaaagcacctggcagaagcaacttagagaagaaaggat
ttattttggcccacagttcagaggaatatagtcctttaccacagggaagg
cgtggcaactcagatagctaaaggaaccaggtccatgtggcagaagccca
caacctgacttctactaagtgattttccctagggagccaagaacaaacac
ctacacaccccagtggagtatgaggaaacagtaacaattataccatggtc
caacttaatgaaccaatgggtttattacctacagtagtataagtgagggg
ttgcttacaggagtatggatgactcagaggcagctgcatcacataaagca
catcctagcacaagtaatgacttaggaaaggttgtaccgatgggcctccc
agcatgccttgcaggcaactgaaaggtcaaagagtctttctcctcagctg
ttgtactgcttatataagaagaccttgtgagtctaagttttaggagtttc
ctgagtctaacaaggttattcctggagcttgtgtcattgcttctactcta
ggcagctcctcctcccttctgaaggaacagtcgaagcag

gaattcagtactttctctggtataaaatctctctgtgtcagccaaaaatt
gagattcaaaggattctttatacactgttaacgtagggccctttgcaaat
gcatcatcttcattcagccccaattccactagaaataaatatgaactata
tttcaattaccgtatttcttgttatattttacagacaatactttgatgta
gcagtcagtttaagttacacttaaaagatcaatgtgaaatggtgggttgt
aaggtaactattatttactagtattgaagtatgcttgtgccaataaatga
aaacacaaaaagaataaactccaagatgtatagcagcaaataatccttac
ttgtgccaggaacacttcaaaattacaagtttagttagagaaagtttaca
tttccaaaagtgatataaatattgcattgtaaactttcacagaaatgcca
actcacctaagcttcaataacgcatcatttaatcagtgtctcaatctcaa
atttttcaagttgatatagttttctggttattatttagctcaaaaaacaa
ttatatattagtaattcctcatgaaaacagcaaaagaaatataattaaat
ttttttcacaaaatttccttaaagtacaaagattaaatattttttacgat
ttgtaaaattactatttaaaagtaccttaaagatgaactaacattcctga
gaatctttaataaatattttaaaatgaatattagagcactattataataa
aggcaaattatttaccataagattgtacaactccactaatcagtcttgta
ttgatggtttctccatttctttccttttcaatcaactttaaaacagcatt
tgttacctttaagaacacacaaaaggtatattatagctcacaatgtatct
tatatatcctttaaacatttaaagccactaaataatacaagtaacaaata
ttttacggggatgggtacatgcatgtgtagacatagaccaaaggcacctt
cagaactgtttgccagagaatttcactgtgtctttagaacagtctctcac
tggcatgagctcatcaggtgcaggctggcctgttcagaagcacttagatc
tactgacctacctttgcaatgctagatcactagtggcatcactatatacg
cactaatacgttggcaactgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47303900_47305052
seq2: B6Ng01-310J07.b_45_1183

seq1  GAATTCCAGGGTCAGCTGCTATGGGAAGACAATGAGATAGCTTTGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTCAGCTGCTATGGGAAGACAATGAGATAGCTTTGCAGCT  50

seq1  TCCAGCACCTGTGCTCCTGCTCTTCCTGAGGTGAGGGTGCTCACAGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACCTGTGCTCCTGCTCTTCCTGAGGTGAGGGTGCTCACAGTCTC  100

seq1  TGTGCTCTAACCAGACTTAAATGACCCCCTATTGTTCATACTGACCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTAACCAGACTTAAATGACCCCCTATTGTTCATACTGACCTAAT  150

seq1  TCAGAAAGTCTTTTCATCCTACCTCCAGGTACTTACTAACAAATGGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGTCTTTTCATCCTACCTCCAGGTACTTACTAACAAATGGATTC  200

seq1  CTGCTGCTATTTGATTCTTGTTATTTCATCTCCTGGTCCTACGCACTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTATTTGATTCTTGTTATTTCATCTCCTGGTCCTACGCACTAGT  250

seq1  CAGAAAACTTCCTGGTCATTTGGATAAAATAAATTGTCTTTCTGTTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACTTCCTGGTCATTTGGATAAAATAAATTGTCTTTCTGTTTTGC  300

seq1  TGTGCCCCCCATTACCCCCCATCCGGTGAGTAATTTGGAACAATTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCCCCATTACCCCCCATCCGGTGAGTAATTTGGAACAATTCCTCT  350

seq1  TCTTAGTACCTCTTCTTAGTAAGAGTGGTCAAAACTATGCTAGACCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTACCTCTTCTTAGTAAGAGTGGTCAAAACTATGCTAGACCATTT  400

seq1  CTCTATGCTGAAAGCAGAACTTGAATGGAAACAATAGTCAGCAAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGCTGAAAGCAGAACTTGAATGGAAACAATAGTCAGCAAAATAAA  450

seq1  TAGACATCTCAGAAAGTAGCATTAAGACCAATGAAATTGTTAACAGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATCTCAGAAAGTAGCATTAAGACCAATGAAATTGTTAACAGTTCA  500

seq1  CTTTTATAACCTGCTTAAGGACAACCAGCTTAGTATATTAGTTACATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAACCTGCTTAAGGACAACCAGCTTAGTATATTAGTTACATTTG  550

seq1  TATCACTGTGACCAAAGCACCTGGCAGAAGCAACTTAGAGAAGAAAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGTGACCAAAGCACCTGGCAGAAGCAACTTAGAGAAGAAAGGAT  600

seq1  TTATTTTGGCCCACAGTTCAGAGGAATATAGTCCTTTACCACAGGGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGCCCACAGTTCAGAGGAATATAGTCCTTTACCACAGGGAAGG  650

seq1  CGTGGCAACTCAGATAGCTAAAGGAACCAGGTCCATGTGGCAGAAGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCAACTCAGATAGCTAAAGGAACCAGGTCCATGTGGCAGAAGCCCA  700

seq1  CAACCTGACTTCTACTAAGTGATTTTCCCTAGGGAGCCAAGAACAAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGACTTCTACTAAGTGATTTTCCCTAGGGAGCCAAGAACAAACAC  750

seq1  CTACACACCCCAGTGGAGTATGAGGAAACAGTAACAATTATACCATGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACCCCAGTGGAGTATGAGGAAACAGTAACAATTATACCATGGTC  800

seq1  CAACTTAATGAACCAATGGGTTTATTACCTACAGTAGTATAAGTGAGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAATGAACCAATGGGTTTATTACCTACAGTAGTATAAGTGAGGGG  850

seq1  TTGCTTACAGGAGTATGGATGACTCAGAGGCAGCTGCATCACATAAAAGC  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGCTTACAGGAGTATGGATGACTCAGAGGCAGCTGCATCACAT-AAAGC  899

seq1  ACATCCTAGCACAAGTAATGACTTAGG-AAGGTTGTACCGATGGGCCTCC  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACATCCTAGCACAAGTAATGACTTAGGAAAGGTTGTACCGATGGGCCTCC  949

seq1  CAGCATGCCTTGCAGGCAACTGAAAGGTCAAAGAGTCTTTCTCCTCAGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCCTTGCAGGCAACTGAAAGGTCAAAGAGTCTTTCTCCTCAGCT  999

seq1  GTTGTTACTGCTTATATAAGAAGACCTTGTGAGTCTTAAGTTTTAGGAGT  1049
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTG-TACTGCTTATATAAGAAGACCTTGTGAGTC-TAAGTTTTAGGAGT  1047

seq1  TTCCTGAGTCTAACAAGGTTTATTTCCTGAGCCTTGTGTCATTTGCTTCC  1099
      ||||||||||||||||||||   ||||||   ||||||||| ||||||| 
seq2  TTCCTGAGTCTAACAAGGTT--ATTCCTGGAGCTTGTGTCA-TTGCTTC-  1093

seq1  TAACTCTTAGCCAGCTTCCCTCCTCCCTTCTGGAGGGAACAAGTCCGGAA  1149
        |||| ||| |||||  ||||||||||||| || ||||| ||||  |||
seq2  -TACTC-TAGGCAGCT--CCTCCTCCCTTCT-GAAGGAAC-AGTC--GAA  1135

seq1  GCAG  1153
      ||||
seq2  GCAG  1139


seq1: chr6_47451371_47452553
seq2: B6Ng01-310J07.g_65_1238 (reverse)

seq1  TCCCCAG-TGCC-ACGTA-TAGTGCG--TATAGTGATGCCCACTAGTGAT  45
      ||||||| |||| ||||| |||||||  |||||||||| |||||||||||
seq2  TCCCCAGTTGCCAACGTATTAGTGCGTATATAGTGATG-CCACTAGTGAT  49

seq1  CCTAGCACTGCAAAGGTAGGGTCAGGTAGATCCTTAGTGCTTCCTGACCA  95
       |||||| |||||||||| ||||| |||||| || ||||||| |||| ||
seq2  -CTAGCATTGCAAAGGTA-GGTCA-GTAGAT-CTAAGTGCTT-CTGAACA  94

seq1  GGGCCAAGCTTGCCACCTGAATGAGCTCCATGCCAGTGAGAGACTGTCTT  145
      ||  | ||| || |||||| ||||||| |||||||||||||||||||  |
seq2  GG--CCAGCCTG-CACCTG-ATGAGCT-CATGCCAGTGAGAGACTGTTCT  139

seq1  AAAGACACAGTG-AATTCTTCCTGGCAAACAGTTCTTGAAGGTGCCCTTG  194
      |||||||||||| ||||||  |||||||||||||| |||||||||| |||
seq2  AAAGACACAGTGAAATTCT--CTGGCAAACAGTTC-TGAAGGTGCCTTTG  186

seq1  GTCTATGTCTACACATGCATGTACCCATCCCCCTAAAATATTTGTTACTT  244
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  GTCTATGTCTACACATGCATGTACCCATCCCCGTAAAATATTTGTTAC-T  235

seq1  TGTATTATTTAGTGGCTTTAAATGTTTAAAGGATATATAAGATACATTGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATTTAGTGGCTTTAAATGTTTAAAGGATATATAAGATACATTGT  285

seq1  GAGCTATAATATACCTTTTGTGTGTTCTTAAAGGTAACAAATGCTGTTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATAATATACCTTTTGTGTGTTCTTAAAGGTAACAAATGCTGTTTT  335

seq1  AAAGTTGATTGAAAAGGAAAGAAATGGAGAAACCATCAATACAAGACTGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGATTGAAAAGGAAAGAAATGGAGAAACCATCAATACAAGACTGA  385

seq1  TTAGTGGAGTTGTACAATCTTATGGTAAATAATTTGCCTTTATTATAATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGAGTTGTACAATCTTATGGTAAATAATTTGCCTTTATTATAATA  435

seq1  GTGCTCTAATATTCATTTTAAAATATTTATTAAAGATTCTCAGGAATGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTAATATTCATTTTAAAATATTTATTAAAGATTCTCAGGAATGTT  485

seq1  AGTTCATCTTTAAGGTACTTTTAAATAGTAATTTTACAAATCGTAAAAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCTTTAAGGTACTTTTAAATAGTAATTTTACAAATCGTAAAAAA  535

seq1  TATTTAATCTTTGTACTTTAAGGAAATTTTGTGAAAAAAATTTAATTATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATCTTTGTACTTTAAGGAAATTTTGTGAAAAAAATTTAATTATA  585

seq1  TTTCTTTTGCTGTTTTCATGAGGAATTACTAATATATAATTGTTTTTTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGCTGTTTTCATGAGGAATTACTAATATATAATTGTTTTTTGA  635

seq1  GCTAAATAATAACCAGAAAACTATATCAACTTGAAAAATTTGAGATTGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATAATAACCAGAAAACTATATCAACTTGAAAAATTTGAGATTGAG  685

seq1  ACACTGATTAAATGATGCGTTATTGAAGCTTAGGTGAGTTGGCATTTCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATTAAATGATGCGTTATTGAAGCTTAGGTGAGTTGGCATTTCTG  735

seq1  TGAAAGTTTACAATGCAATATTTATATCACTTTTGGAAATGTAAACTTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTTACAATGCAATATTTATATCACTTTTGGAAATGTAAACTTTC  785

seq1  TCTAACTAAACTTGTAATTTTGAAGTGTTCCTGGCACAAGTAAGGATTAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTAAACTTGTAATTTTGAAGTGTTCCTGGCACAAGTAAGGATTAT  835

seq1  TTGCTGCTATACATCTTGGAGTTTATTCTTTTTGTGTTTTCATTTATTGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTATACATCTTGGAGTTTATTCTTTTTGTGTTTTCATTTATTGG  885

seq1  CACAAGCATACTTCAATACTAGTAAATAATAGTTACCTTACAACCCACCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCATACTTCAATACTAGTAAATAATAGTTACCTTACAACCCACCA  935

seq1  TTTCACATTGATCTTTTAAGTGTAACTTAAACTGACTGCTACATCAAAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTGATCTTTTAAGTGTAACTTAAACTGACTGCTACATCAAAGT  985

seq1  ATTGTCTGTAAAATATAACAAGAAATACGGTAATTGAAATATAGTTCATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTGTAAAATATAACAAGAAATACGGTAATTGAAATATAGTTCATA  1035

seq1  TTTATTTCTAGTGGAATTGGGGCTGAATGAAGATGATGCATTTGCAAAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTAGTGGAATTGGGGCTGAATGAAGATGATGCATTTGCAAAGG  1085

seq1  GCCCTACGTTAACAGTGTATAAAGAATCCTTTGAATCTCAATTTTTGGCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACGTTAACAGTGTATAAAGAATCCTTTGAATCTCAATTTTTGGCT  1135

seq1  GACACAGAGAGATTTTATACCAGAGAAAGTACTGAATTC  1183
      |||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAGAGATTTTATACCAGAGAAAGTACTGAATTC  1174


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