BAC Information

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BAC

Clone NameB6Ng01-312E08
Chromosome6 (Build37)
Map Location 88,057,329 - 88,230,188
singlet/doubletdoublet
Overlap geneGata2, Dnajb8, Eefsec
Upstream geneD6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1
Downstream geneRuvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312E08.bB6Ng01-312E08.g
ACCGA103782GA103783
length498363
definitionB6Ng01-312E08.b B6Ng01-312E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,057,329 - 88,057,832)(88,229,820 - 88,230,188)
sequence
tgaggttccattttcatgtggtgatgaagccagggagaaggcaaggttcc
ccttcttttggcttccactcttaatgaagaatccaggattcccttaaaaa
tcagtgtcttagttggctttagccactatcatgaaaagctgcctgggtgg
cttatcaacagggctttaccatcctacgtctagagaatcctgaagggagg
tgtgggcatttgggtgcggtgagactcctcttggttattgggtgggcttt
tcaccaagtccctcatgctggagaaggaaagaggaacctcagagacctta
tcaggtcactcatctcattgatgaaggttgttcttccatgagctaatcat
tatcatcatcacacgcatgcacgcacgcacgcacacacactcactcactc
cattagggattaggctaacatgaatttgggagcgtacacacatgactatg
gcaagaactggagtctgttgaaatgctgatgggaggtggggggaggga
acagccagccagttctgcatcttctctgcagtgcttttgagtctccactg
tgacatccctgtgccaggccctaggactaacaacgtgaacacagttggga
tgactccatgtcagtggagcttacagtgtcatctgtaccacaggagttcc
acaatatcactcttgaactgttcacaactctggaaggctggaggctggaa
acccaagatcagagagtgggcaaggctagctctccttggtttacaaatgt
cctttctctctgtgtcctctggtagccaactctatgtgtatctgtcttaa
tctctgtctctctctgtctccgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_88057329_88057832
seq2: B6Ng01-312E08.b_47_550

seq1  GAATTCTGAGGTTCCATTTTCATGTGGTGATGAAGCCAGGGAGAAGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGTTCCATTTTCATGTGGTGATGAAGCCAGGGAGAAGGCAA  50

seq1  GGTTCCCCTTCTTTTGGCTTCCACTCTTAATGAAGAATCCAGGATTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCCTTCTTTTGGCTTCCACTCTTAATGAAGAATCCAGGATTCCCT  100

seq1  TAAAAATCAGTGTCTTAGTTGGCTTTAGCCACTATCATGAAAAGCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCAGTGTCTTAGTTGGCTTTAGCCACTATCATGAAAAGCTGCCT  150

seq1  GGGTGGCTTATCAACAGGGCTTTACCATCCTACGTCTAGAGAATCCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTTATCAACAGGGCTTTACCATCCTACGTCTAGAGAATCCTGAA  200

seq1  GGGAGGTGTGGGCATTTGGGTGCGGTGAGACTCCTCTTGGTTATTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGTGGGCATTTGGGTGCGGTGAGACTCCTCTTGGTTATTGGGTG  250

seq1  GGCTTTTCACCAAGTCCCTCATGCTGGAGAAGGAAAGAGGAACCTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCACCAAGTCCCTCATGCTGGAGAAGGAAAGAGGAACCTCAGAG  300

seq1  ACCTTATCAGGTCACTCATCTCATTGATGAAGGTTGTTCTTCCATGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATCAGGTCACTCATCTCATTGATGAAGGTTGTTCTTCCATGAGCT  350

seq1  AATCATTATCATCATCACACGCATGCACGCACGCACGCACACACACTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTATCATCATCACACGCATGCACGCACGCACGCACACACACTCAC  400

seq1  TCACTCCATTAGGGATTAGGCTAACATGAATTTGGGAGCGTACACACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCATTAGGGATTAGGCTAACATGAATTTGGGAGCGTACACACATG  450

seq1  ACTATGGCAAGAACTGGAGTCTGTTGAAATGCTGATGGGAGGTGGGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGCAAGAACTGGAGTCTGTTGAAATGCTGATGGGAGGTGGGGGGA  500

seq1  GGGA  504
      ||||
seq2  GGGA  504

seq1: chr6_88229820_88230188
seq2: B6Ng01-312E08.g_67_435 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACACGGAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACGGAGACAG  50

seq1  AGAGAGACAGAGATTAAGACAGATACACATAGAGTTGGCTACCAGAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGAGATTAAGACAGATACACATAGAGTTGGCTACCAGAGGAC  100

seq1  ACAGAGAGAAAGGACATTTGTAAACCAAGGAGAGCTAGCCTTGCCCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAAAGGACATTTGTAAACCAAGGAGAGCTAGCCTTGCCCACTC  150

seq1  TCTGATCTTGGGTTTCCAGCCTCCAGCCTTCCAGAGTTGTGAACAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTTGGGTTTCCAGCCTCCAGCCTTCCAGAGTTGTGAACAGTTCA  200

seq1  AGAGTGATATTGTGGAACTCCTGTGGTACAGATGACACTGTAAGCTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATATTGTGGAACTCCTGTGGTACAGATGACACTGTAAGCTCCAC  250

seq1  TGACATGGAGTCATCCCAACTGTGTTCACGTTGTTAGTCCTAGGGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGAGTCATCCCAACTGTGTTCACGTTGTTAGTCCTAGGGCCTGG  300

seq1  CACAGGGATGTCACAGTGGAGACTCAAAAGCACTGCAGAGAAGATGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGATGTCACAGTGGAGACTCAAAAGCACTGCAGAGAAGATGCAGA  350

seq1  ACTGGCTGGCTGTGAATTC  369
      |||||||||||||||||||
seq2  ACTGGCTGGCTGTGAATTC  369