BAC Information

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BAC

Clone NameB6Ng01-312K11
Chromosome6 (Build37)
Map Location 107,916,673 - 108,071,091
singlet/doubletdoublet
Overlap geneSetmar, Sumf1
Upstream genePpia-ps6_1128.1, Lrrn1
Downstream geneLOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312K11.bB6Ng01-312K11.g
ACCGA104069GA104070
length1,1561,013
definitionB6Ng01-312K11.b B6Ng01-312K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,069,940 - 108,071,091)(107,916,673 - 107,917,681)
sequence
gaattcctcctcttttcccatcttcttttatgtgtatgaatgcttgcttg
catatgttggtgtagcatgagattgtagtacccacagaggccagaagaag
gcctctagtcccctgagactgaggttccagttgtgagctgccttgtgggt
gctgtgaattgaacctgggtcctctggaagagtcaccaatgcttttaaca
gctgagctgtctctctagccccaagtgccttccttttgtacattgataaa
ctcacccagtaattctggtctagttctagatgttcctgaagagaaagctg
tgattcgagcctttattttcactggtagactttacattttcagcatgcca
attataacagtaatattatcaatgtgtctaagtgttttagggtcataggt
ataccctgaacttgcaaaggaattatgtagagtcaggaactgagtgtata
aaataccttgaaagatacctgcccttctatccactgtgacaagactagca
tgatagtgtactgcccctctttgagagtgtggtgggcatagtccttttac
ctttcgtcttttaatcaatagtctttgacaaatatgtttttagctagaaa
tgggaaaatgaagccaggaggaggattgtgcccgggcgtctcttattttc
agtaaacagagcagatggctgtgtgattagtttcccttttgaacaacaaa
ggaaaaacaaatcgttcccacccccactccccagctctggcttatgggag
tttcttggcgcttcttatatgccttttggagaacacacttgatgttgaga
cttttatcttggcagctgaagcgccaggatttttatctccattgcccttt
tatcagaacttctttctagaagaaacagacataccttttggctgctctgc
ctgtgtctttgttctctttactgttccttcttgccagcattaagctctct
ccaactccctgccttttctggtttctaaggggaatgaaggccgagagctt
cagagcactgggtcctggagcaaagcctggctctgagtcttccctctttc
acttttcttttcttccaaagggttattgatggtgtaataacaaggaatac
tacaacaatgccttgttccaacccgcactaattctaaagaattttattta
aaagaa

gaattctccattctttccagttgagagagaagaaggagaaaatgggagag
agagaggatgcagaggaggaggaagaagaaagcagagcagaagcacatag
cctggagaaactgcaagttctgaggggtttcatagatggagaagattgta
gagtagcggtagatctgcccaatctaggcacacagcatgtaatcatattg
agttgtgttttcattgctagggcatatttgggttggagatttactgctat
agataccattacagaaaaccacaaccagtcaaaataaagagttgtggagc
ccagtcctacagtggatacacctacaacacaactccttcacctaaactaa
ttgtataaaatagagtagaaggattatatgagccagaagattaaggagtt
tgctctaagattgtatctactagaaatgttcactacacctataaactaca
cctaaacatgagctaaacatgaacaacaacataaagtagataagggaaaa
accatgaggcctcaatcctacacaaagacctaaaggcaactaacaaatgc
tgtatattttaacattatgactaaaaatatattcttgtaacaacaattac
taaaaaaaataggccatacatttaaaagaacgcaaagaggagtatataag
agcatttagagggaggaaaggaaagggggaaattatgtaattatattata
atctcaaaaataataaaaatattattttttaaatttaaaaataagcaaaa
aaaattaaaaaggttggggacccctatggaagagttaggggaagacctga
ggagctggaggggactgcgatgccataggaagagaccaacagtatcaact
aacctgggctcctgggagcttccagaggtttaagtcaccaactaaagagc
atacatgggctggtttcgaggtggcctcagtgggagaagatgcacctaat
tgggtagacacttcatgcccccatgggaaaggaagatgccaggatagggg
gtaggaaaggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108069940_108071091
seq2: B6Ng01-312K11.b_45_1200 (reverse)

seq1  TTCTTTAAAAATAAAATACTTTAGATTTAGTGCCGTTTGGAACAAGGCAT  50
      ||||||  ||||||||| ||||||| ||||||| | ||||||||||||||
seq2  TTCTTT-TAAATAAAATTCTTTAGAATTAGTGCGGGTTGGAACAAGGCAT  49

seq1  TGTTGTAAGTAT--CTTG-TATTACACCATCAATAACCCCTTTGGAGAAA  97
      |||||| |||||  |||| |||||||||||||||||||| || | |||||
seq2  TGTTGT-AGTATTCCTTGTTATTACACCATCAATAACCCTTTGGAAGAAA  98

seq1  GGAAAAGTG-AAGAGTGAAGACTCAGAGCCAGGCTTTGCTCCAGGA-CCA  145
       |||||||| ||||| |||||||||||||||||||||||||||||| |||
seq2  AGAAAAGTGAAAGAGGGAAGACTCAGAGCCAGGCTTTGCTCCAGGACCCA  148

seq1  GTGCTCTGAAGCTCTCGGCCTTCATTCCCCTTAGAAACCAG-AAAGGCAG  194
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGCTCTGAAGCTCTCGGCCTTCATTCCCCTTAGAAACCAGAAAAGGCAG  198

seq1  GGAGTTGGAGAGAGCTTAATGCTGGCAAGAAGGAACAGTAAAGAGAACAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGAGAGAGCTTAATGCTGGCAAGAAGGAACAGTAAAGAGAACAA  248

seq1  AGACACAGGCAGAGCAGCCAAAAGGTATGTCTGTTTCTTCTAGAAAGAAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGGCAGAGCAGCCAAAAGGTATGTCTGTTTCTTCTAGAAAGAAG  298

seq1  TTCTGATAAAAGGGCAATGGAGATAAAAATCCTGGCGCTTCAGCTGCCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATAAAAGGGCAATGGAGATAAAAATCCTGGCGCTTCAGCTGCCAA  348

seq1  GATAAAAGTCTCAACATCAAGTGTGTTCTCCAAAAGGCATATAAGAAGCG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGTCTCAACATCAAGTGTGTTCTCCAAAAGGCATATAAGAAGCG  398

seq1  CCAAGAAACTCCCATAAGCCAGAGCTGGGGAGTGGGGGTGGGAACGATTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAACTCCCATAAGCCAGAGCTGGGGAGTGGGGGTGGGAACGATTT  448

seq1  GTTTTTCCTTTGTTGTTCAAAAGGGAAACTAATCACACAGCCATCTGCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCTTTGTTGTTCAAAAGGGAAACTAATCACACAGCCATCTGCTC  498

seq1  TGTTTACTGAAAATAAGAGACGCCCGGGCACAATCCTCCTCCTGGCTTCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTGAAAATAAGAGACGCCCGGGCACAATCCTCCTCCTGGCTTCA  548

seq1  TTTTCCCATTTCTAGCTAAAAACATATTTGTCAAAGACTATTGATTAAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATTTCTAGCTAAAAACATATTTGTCAAAGACTATTGATTAAAA  598

seq1  GACGAAAGGTAAAAGGACTATGCCCACCACACTCTCAAAGAGGGGCAGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAAAGGTAAAAGGACTATGCCCACCACACTCTCAAAGAGGGGCAGTA  648

seq1  CACTATCATGCTAGTCTTGTCACAGTGGATAGAAGGGCAGGTATCTTTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCATGCTAGTCTTGTCACAGTGGATAGAAGGGCAGGTATCTTTCA  698

seq1  AGGTATTTTATACACTCAGTTCCTGACTCTACATAATTCCTTTGCAAGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTTATACACTCAGTTCCTGACTCTACATAATTCCTTTGCAAGTT  748

seq1  CAGGGTATACCTATGACCCTAAAACACTTAGACACATTGATAATATTACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATACCTATGACCCTAAAACACTTAGACACATTGATAATATTACT  798

seq1  GTTATAATTGGCATGCTGAAAATGTAAAGTCTACCAGTGAAAATAAAGGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATTGGCATGCTGAAAATGTAAAGTCTACCAGTGAAAATAAAGGC  848

seq1  TCGAATCACAGCTTTCTCTTCAGGAACATCTAGAACTAGACCAGAATTAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATCACAGCTTTCTCTTCAGGAACATCTAGAACTAGACCAGAATTAC  898

seq1  TGGGTGAGTTTATCAATGTACAAAAGGAAGGCACTTGGGGCTAGAGAGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAGTTTATCAATGTACAAAAGGAAGGCACTTGGGGCTAGAGAGAC  948

seq1  AGCTCAGCTGTTAAAAGCATTGGTGACTCTTCCAGAGGACCCAGGTTCAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCTGTTAAAAGCATTGGTGACTCTTCCAGAGGACCCAGGTTCAA  998

seq1  TTCACAGCACCCACAAGGCAGCTCACAACTGGAACCTCAGTCTCAGGGGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCACCCACAAGGCAGCTCACAACTGGAACCTCAGTCTCAGGGGA  1048

seq1  CTAGAGGCCTTCTTCTGGCCTCTGTGGGTACTACAATCTCATGCTACACC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGCCTTCTTCTGGCCTCTGTGGGTACTACAATCTCATGCTACACC  1098

seq1  AACATATGCAAGCAAGCATTCATACACATAAAAGAAGATGGGAAAAGAGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGCAAGCAAGCATTCATACACATAAAAGAAGATGGGAAAAGAGG  1148

seq1  AGGAATTC  1152
      ||||||||
seq2  AGGAATTC  1156


seq1: chr6_107916673_107917681
seq2: B6Ng01-312K11.g_66_1078

seq1  GAATTCTCCATTCTTTCCAGTTGAGAGAGAAGAAGGAGAAAATGGGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTCTTTCCAGTTGAGAGAGAAGAAGGAGAAAATGGGAGAG  50

seq1  AGAGAGGATGCAGAGGAGGAGGAAGAAGAAAGCAGAGCAGAAGCACATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGATGCAGAGGAGGAGGAAGAAGAAAGCAGAGCAGAAGCACATAG  100

seq1  CCTGGAGAAACTGCAAGTTCTGAGGGGTTTCATAGATGGAGAAGATTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAAACTGCAAGTTCTGAGGGGTTTCATAGATGGAGAAGATTGTA  150

seq1  GAGTAGCGGTAGATCTGCCCAATCTAGGCACACAGCATGTAATCATATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCGGTAGATCTGCCCAATCTAGGCACACAGCATGTAATCATATTG  200

seq1  AGTTGTGTTTTCATTGCTAGGGCATATTTGGGTTGGAGATTTACTGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGTTTTCATTGCTAGGGCATATTTGGGTTGGAGATTTACTGCTAT  250

seq1  AGATACCATTACAGAAAACCACAACCAGTCAAAATAAAGAGTTGTGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCATTACAGAAAACCACAACCAGTCAAAATAAAGAGTTGTGGAGC  300

seq1  CCAGTCCTACAGTGGATACACCTACAACACAACTCCTTCACCTAAACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTACAGTGGATACACCTACAACACAACTCCTTCACCTAAACTAA  350

seq1  TTGTATAAAATAGAGTAGAAGGATTATATGAGCCAGAAGATTAAGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAAATAGAGTAGAAGGATTATATGAGCCAGAAGATTAAGGAGTT  400

seq1  TGCTCTAAGATTGTATCTACTAGAAATGTTCACTACACCTATAAACTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAGATTGTATCTACTAGAAATGTTCACTACACCTATAAACTACA  450

seq1  CCTAAACATGAGCTAAACATGAACAACAACATAAAGTAGATAAGGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACATGAGCTAAACATGAACAACAACATAAAGTAGATAAGGGAAAA  500

seq1  ACCATGAGGCCTCAATCCTACACAAAGACCTAAAGGCAACTAACAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGGCCTCAATCCTACACAAAGACCTAAAGGCAACTAACAAATGC  550

seq1  TGTATATTTTAACATTATGACTAAAAATATATTCTTGTAACAACAATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTTAACATTATGACTAAAAATATATTCTTGTAACAACAATTAC  600

seq1  TAAAAAAAATAGGCCATACATTTAAAAGAACGCAAAGAGGAGTATATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATAGGCCATACATTTAAAAGAACGCAAAGAGGAGTATATAAG  650

seq1  AGCATTTAGAGGGAGGAAAGGAAAGGGGGAAATTATGTAATTATATTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAGAGGGAGGAAAGGAAAGGGGGAAATTATGTAATTATATTATA  700

seq1  ATCTCAAAAATAATAAAAATATTATTTTTTAAATTTAAAAATAAGCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAAATAATAAAAATATTATTTTTTAAATTTAAAAATAAGCAAAA  750

seq1  AAAATTAAAAAGGTTGGGGACCCCTATGGAAGAGTTAGGGGAAGACCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAAAGGTTGGGGACCCCTATGGAAGAGTTAGGGGAAGACCTGA  800

seq1  GGAGCTGGAGGGGACTGCGATGCCATAGGAAGAGACCAACAGTATCAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGAGGGGACTGCGATGCCATAGGAAGAGACCAACAGTATCAACT  850

seq1  AACCTGGGCTCCTGGGAGCTTCCAGAGGTTTAAGTCACCAACTAAAGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGGCTCCTGGGAGCTTCCAGAGGTTTAAGTCACCAACTAAAGAGC  900

seq1  ATACATGGGCTGG-TTCGAGGTGGCCTCAGTGGGAGAAGATGCACCTAAT  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATACATGGGCTGGTTTCGAGGTGGCCTCAGTGGGAGAAGATGCACCTAAT  950

seq1  TGGGTAGACACTTCATG-CCCCATGG--AAGGAAGATGCCCAGGATAGGG  996
      ||||||||||||||||| ||||||||  |||||||||| |||||||||||
seq2  TGGGTAGACACTTCATGCCCCCATGGGAAAGGAAGATG-CCAGGATAGGG  999

seq1  GGTAGG-AAGGTGG  1009
      |||||| |||||||
seq2  GGTAGGAAAGGTGG  1013


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