BAC Information

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BAC

Clone NameB6Ng01-313A17
Chromosome6 (Build37)9 (Build37)
Map Location 79,243,873 - 79,244,15655,460,913 - 55,461,445
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313A17.bB6Ng01-313A17.g
ACCGA104361GA104362
length969528
definitionB6Ng01-313A17.b B6Ng01-313A17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,243,873 - 79,244,156)(55,460,913 - 55,461,445)
sequence
gaattctttgtttagctctgtaccccatttttaatagggttattcactca
ctgataagcagttattagcccagaaacttagaatatccaagatacaattt
gcaaaacatatgaaactcaagaagaaggaagaccaaagtgtggatacttt
gtaccttcttagaatggggaacaaaatacccatggaaggagttacagaaa
caaagttcagagcaaagaggaaaggaaagaccatccagagactgccccac
ccggggatccatcccatatacaaccaccaaacccagacactattgcatat
gccagaaagactttgctgagaggaccctgagatagctctctcttgtgagg
ctatgccagtgcctggcaaatacagaagtggatgctcacagtcatctatt
agatggaacacagggctcccaatggagaagctagagaaagtacccaaaga
gctgaaggggtctgcaaccctataggtggaacaacaatgtgaactaacca
gtacccccagagctcgcatctctagctgcatatgtagcagaagatggcat
cgacggccatcaataggaagagaggccccttggtcttgtgaactttatat
ttctcagtacaggggaacgccaggaccaagaagtgggagtgggtgggtag
ggaagcaggacaggggaagggtacaggggacttttgggatagcatttgaa
atgtaaatgaagaaaatatctaataaaaatttgaaaaaaaagaggaaaaa
atgaacatttgagacctgaaaactgtagtaatctaaaacaactagtagta
ataaaaataataataaaacctgctagatatagatttagtattctggaaga
tagttcttaagaaaggaatttagactaagcttttagaaaggggaatacac
gaaactaagagaagagcataagtggtttggtatatattaagtattttagg
tttgtgtataactaacact
tgggagagctggccccgccactcaacagctgcagtactcaggagataggc
ctgcaccttgtgcaggaagcacagtagatctggtcttgggttcagaggga
gtgggaggtgcaggtgagccagccctgaggatatgagcctggaagagctg
gccctggtactcatctgctgtaaggtggtgtgggtgagggcaagatgcct
gcccctcaccatcctggggtcatgagagtggagagctggtcctatacctc
gtcagctgcatttgcaagtaaagaagtggagacaaaagagcataccttcg
aatacactgtgacacactacagctcccacaaggagatttcttttttttct
tttggagggggcagaattttttttttttaatcctaaagattcatgcacag
gtatgtcaatctgtctggatccaataaaaaaaaatctgttttgacaagat
ctgtttgaaaggcatgtcatacttgtttaggaagagacccagttctctcc
tactggtaaattttaacttgtcttagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79243873_79244156
seq2: B6Ng01-313A17.b_96_348 (reverse)

seq1  GGCATTTGCAATAGTGTCTGGGTTTGTTTTTTGTTTTTTTTTTTTGTTTG  50
      ||||| ||||||||||||||||||||                        
seq2  GGCATATGCAATAGTGTCTGGGTTTG------------------------  26

seq1  TTTGTTTTTGTTTTTTTATGGGATGAATCCCCTGGTGGGGCAGTCTCTGG  100
              || || | ||||||||| |||||| |||||||||||||||||
seq2  -------GTGGTTGTATATGGGATGGATCCCCGGGTGGGGCAGTCTCTGG  69

seq1  ATGCTC-TTCATTCAGTCTCTGCTACAAACTTTGTCTCTGTAACTCCTTC  149
      ||| || ||| ||   ||| ||||   |||||||| ||||||||||||||
seq2  ATGGTCTTTCCTTTCCTCTTTGCTCTGAACTTTGTTTCTGTAACTCCTTC  119

seq1  CATGGGTATTTTGTTCCCGCTTCTAAGAAGGATCAAAGTATCCACACTTT  199
      ||||||||||||||||||  |||||||||||  |||||||||||||||||
seq2  CATGGGTATTTTGTTCCCCATTCTAAGAAGGTACAAAGTATCCACACTTT  169

seq1  GGCCTTCCTTCTTCTTGAGTTTCATGTGTTTTGCAAATTGTTATCATGGA  249
      || |||||||||||||||||||||| |||||||||||||| |||| ||||
seq2  GGTCTTCCTTCTTCTTGAGTTTCATATGTTTTGCAAATTG-TATCTTGGA  218

seq1  TATTCTGAGTTTCTGGGCTAATAAGCACTTATCAG  284
      |||||| |||||||||||||||||   ||||||||
seq2  TATTCTAAGTTTCTGGGCTAATAACTGCTTATCAG  253

seq1: chr9_55460913_55461445
seq2: B6Ng01-313A17.g_65_598

seq1  GAATTCTGGGAGAGCTGGCCCCGCCACTCAACAGCTGCAGTACTCAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGAGCTGGCCCCGCCACTCAACAGCTGCAGTACTCAGGAG  50

seq1  ATAGGCCTGCACCTTGTGCAGGAAGCACAGTAGATCTGGTCTTGGGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCTGCACCTTGTGCAGGAAGCACAGTAGATCTGGTCTTGGGTTCA  100

seq1  GAGGGAGTGGGAGGTGCAGGTGAGCCAGCCCTGAGGATATGAGCCTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTGGGAGGTGCAGGTGAGCCAGCCCTGAGGATATGAGCCTGGAA  150

seq1  GAGCTGGCCCTGGTACTCATCTGCTGTAAGGTGGTGTGGGTGAGGGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCCCTGGTACTCATCTGCTGTAAGGTGGTGTGGGTGAGGGCAAG  200

seq1  ATGCCTGCCCCTCACCATCCTGGGGTCATGAGAGTGGAGAGCTGGTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCCCCTCACCATCCTGGGGTCATGAGAGTGGAGAGCTGGTCCTA  250

seq1  TACCTCGTCAGCTGCATTTGCAAGTAAAGAAGTGGAGACAAAAGAGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCGTCAGCTGCATTTGCAAGTAAAGAAGTGGAGACAAAAGAGCATA  300

seq1  CCTTCGAATACACTGTGACACACTACAGCTCCCACAAGGAGATTTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGAATACACTGTGACACACTACAGCTCCCACAAGGAGATTTCTTTT  350

seq1  TTTTCTTTTGGAGGGGGCAGAATTTTTTTTTTTTAATCCTAAAGATTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTGGAGGGGGCAGAATTTTTTTTTTTTAATCCTAAAGATTCAT  400

seq1  GCACAGGTATGTCAATCTGTCTGGATCCAATAAAAAAAAATCTGTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTATGTCAATCTGTCTGGATCCAATAAAAAAAAATCTGTTTTGA  450

seq1  CAAGATCTGTTTGAAAGGCATGTCATACTTGTTTAGGAAGAGACCCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTGTTTGAAAGGCATGTCATACTTGTTTAGGAAGAGACCCAGTT  500

seq1  CTCTCCTACTGGTAAATTCTAAC-TGTCTTAGTC  533
      |||||||||||||||||| |||| ||||||||||
seq2  CTCTCCTACTGGTAAATTTTAACTTGTCTTAGTC  534