BAC Information

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BAC

Clone NameB6Ng01-313K15
Chromosome6 (Build37)
Map Location 45,181,506 - 45,335,708
singlet/doubletdoublet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313K15.bB6Ng01-313K15.g
ACCGA104810GA104811
length1,1711,166
definitionB6Ng01-313K15.b B6Ng01-313K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,181,506 - 45,182,713)(45,334,508 - 45,335,708)
sequence
gaattcactctgtaacccatgtcaggggaatagtaatgctccaaatccca
actgtgtattccatattttcagatgtttcctgtgaggcagaatttaccat
tattttcagaaaaaaaatatgttattcagagaccacccacttcactgcat
tcgactatgcagtaacatcttcttccctgcatgcttctctgccctttcca
agggctctacctggcttatgaacaagactagggagggtgctgttgctcat
ggctataacccatcccacaccagtgattgctcagagatcagaaaaggatg
ctgaatccagtgtcccttgagctttgttcaacaagtaccatattcatcca
tctaactcaaaaccactcaaaacacaatctccatagcataatactttttt
tttttcgattcatcattaaggaaaatgccaaaggtttctccttcacaaag
tcacaaaaaaggataatcacctggattatcaagatcctttccgttttagc
tacattaacttaaaatataatggccccacacaaacttgtgcttttctttc
ctccaccttccatgcttggggctataaccaggtgtttcatatgaatgctg
atatttgctagtaataatattttaatgttatctggacattttctccttga
aaatatactgcatttaaatttacctgttgactacaaaaattattggtaaa
ttttataattttctaaattatgcctagataatgcatacaaagcatctctt
aagtttcagacaatacaaaaagatggcaggaaaatgccataatcttcttc
cttcctccctttctttctttctttctttctttctttctttcttcttcttc
ttcttccttctcctcctccctcccttccctccatccttccttcctcctcc
tctctctctctctctctctctctctctctttcttcttctgtattgctgtg
gaatcttctaagtcatactcataatataaaaagaaatattctctatccat
tgcctggataatgtaagctggaaggaaagttattttttaactttctttaa
atgtttggttgttgggaatcctattctagtcctcccagtgcaattaacac
taaataatggatactcatcacatgctctggagaatctgcgtctctctcca
tgaggcatgataaattcaagc

gaattcacttagaggggttggcggtaaaatacatatctgacactttccta
attgaattcagtttgatattgagcctgttcatgcaaggcctgcttgccat
gagtacattatatagctcaggtggaactcttcatcttcttgctgctacgt
tttgagtgttgggagaatacatgtttgccattcagcctagtaaatgttgt
gagttttttctttaccacataattaaatgttttctcacatgagtccttcc
tttccttttcccttctacagtacccatcattcttgatctcttagtgatat
tttatctctccaatctctcctttgagatcgttccaggcaacactacctaa
gcaatgtttgttcaaaacctatcagcaattactttcaaattttctcaaag
tgatttaatagagcatgaaaacaaatatattttaatgtgttaattttata
cttctcagcatgtagctgcttctctttaaggtatatacttttctcatgtt
ttaagatcctgtgctaaataacaacaacaaaaatgggccatttgtcaggg
aatggcttgacaacaatgaacaaactcaggacattttttttttattattg
gtaaatcaatttcagataatccatgtgtctaaacagaagtttataggtta
aaaagaaagtactccattcagcaagctaattaagattcacactgaaggag
gttagctaaagtgatgtggttcctttaattcctttatttgaaaagcctgt
aatctaagtggcccttccaattatgggacacagtcttagaagtattcact
tggattacttaggcacacactatgtcattttacgtttccttgtttgccca
tcattaatactatcacacagtgacacagtaaatatttgggaaccaagtac
ttcaaaaaaaaatctcacaaaggtgaagcaaaggaagctttgaggcaaat
ggcaaggggctccaacagaaccatattttcaaagctgccacagagcagtt
ccaccccggttattgacttacactgttctatgaagatgagccatataatg
tacagagtatacacttaagacagtctagacctgtggctagatcacccatt
tctaaagccgaccatcatgaattcagactacaggctcgaactcgcagatg
atgatttgggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_45181506_45182713
seq2: B6Ng01-313K15.b_46_1216

seq1  GAATTCACTCTGTAACCCATGTCAGGGGAATAGTAATGCTCCAAATCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAACCCATGTCAGGGGAATAGTAATGCTCCAAATCCCA  50

seq1  ACTGTGTATTCCATATTTTCAGATGTTTCCTGTGAGGCAGAATTTACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTATTCCATATTTTCAGATGTTTCCTGTGAGGCAGAATTTACCAT  100

seq1  TATTTTCAGAAAAAAAATATGTTATTCAGAGACCACCCACTTCACTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGAAAAAAAATATGTTATTCAGAGACCACCCACTTCACTGCAT  150

seq1  TCGACTATGCAGTAACATCTTCTTCCCTGCATGCTTCTCTGCCCTTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTATGCAGTAACATCTTCTTCCCTGCATGCTTCTCTGCCCTTTCCA  200

seq1  AGGGCTCTACCTGGCTTATGAACAAGACTAGGGAGGGTGCTGTTGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTACCTGGCTTATGAACAAGACTAGGGAGGGTGCTGTTGCTCAT  250

seq1  GGCTATAACCCATCCCACACCAGTGATTGCTCAGAGATCAGAAAAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAACCCATCCCACACCAGTGATTGCTCAGAGATCAGAAAAGGATG  300

seq1  CTGAATCCAGTGTCCCTTGAGCTTTGTTCAACAAGTACCATATTCATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCAGTGTCCCTTGAGCTTTGTTCAACAAGTACCATATTCATCCA  350

seq1  TCTAACTCAAAACCACTCAAAACACAATCTCCATAGCATAATACTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCAAAACCACTCAAAACACAATCTCCATAGCATAATACTTTTTT  400

seq1  TTTTTCGATTCATCATTAAGGAAAATGCCAAAGGTTTCTCCTTCACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGATTCATCATTAAGGAAAATGCCAAAGGTTTCTCCTTCACAAAG  450

seq1  TCACAAAAAAGGATAATCACCTGGATTATCAAGATCCTTTCCGTTTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAAAGGATAATCACCTGGATTATCAAGATCCTTTCCGTTTTAGC  500

seq1  TACATTAACTTAAAATATAATGGCCCCACACAAACTTGTGCTTTTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAACTTAAAATATAATGGCCCCACACAAACTTGTGCTTTTCTTTC  550

seq1  CTCCACCTTCCATGCTTGGGGCTATAACCAGGTGTTTCATATGAATGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTTCCATGCTTGGGGCTATAACCAGGTGTTTCATATGAATGCTG  600

seq1  ATATTTGCTAGTAATAATATTTTAATGTTATCTGGACATTTTCTCCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTAGTAATAATATTTTAATGTTATCTGGACATTTTCTCCTTGA  650

seq1  AAATATACTGCATTTAAATTTACCTGTTGACTACAAAAATTATTGGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACTGCATTTAAATTTACCTGTTGACTACAAAAATTATTGGTAAA  700

seq1  TTTTATAATTTTCTAAATTATGCCTAGATAATGCATACAAAGCATCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATTTTCTAAATTATGCCTAGATAATGCATACAAAGCATCTCTT  750

seq1  AAGTTTCAGACAATACAAAAAGATGGCAGGAAAATGCCATAATCTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAGACAATACAAAAAGATGGCAGGAAAATGCCATAATCTTCTTC  800

seq1  CTTCCTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  850
      |||||||||||||||||||||||||||||||||||||||||||       
seq2  CTTCCTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT-------  843

seq1  TTCTTTCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  900
          ||||||  ||||||||||  ||| |||| ||| |||||| ||| ||
seq2  ---CTTCTTC--TTCTTCCTTC--TCC-TCCTCCCTCCCTTCCCTCCATC  885

seq1  CTTCCTTCCTTCT-CTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTT  949
      |||||||||| || |||||||||||||||||||||||||| |||||| ||
seq2  CTTCCTTCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC-TT  934

seq1  CTTGTTTATTTGCTGTGGGAATCTTCTAAAGTCAATACTCAATAATATAA  999
      ||| | || ||||||| |||||||||| ||||| |||||| |||||||||
seq2  CTTCTGTA-TTGCTGT-GGAATCTTCT-AAGTC-ATACTC-ATAATATAA  979

seq1  AAAGAAATATTTTCTCTATTCCATTGCCTGGATAATGTAAGCTG--AGGA  1047
      |||||||||  ||||||| |||||||||||||||||||||||||  ||||
seq2  AAAGAAATA--TTCTCTA-TCCATTGCCTGGATAATGTAAGCTGGAAGGA  1026

seq1  AAGTTTATTTTTTAATTTTCTTTAAAATTGTTTTTGTTTTGTT-TTGGAA  1096
      ||| ||||||||||| ||||||||||        ||||| ||| |||| |
seq2  AAG-TTATTTTTTAACTTTCTTTAAA--------TGTTTGGTTGTTGGGA  1067

seq1  ATCCCTATTTCTAGTTCTTTCTCCAGTTGCAATTAACATTAATAAATGGG  1146
      || |||| ||||||| ||    |||| ||||||||||| |||  ||||| 
seq2  AT-CCTA-TTCTAGTCCT---CCCAG-TGCAATTAACACTAAATAATGGA  1111

seq1  TACTCATCACATGCTCTGGAAAATACTGTCTTCT-TCCCAATGAGGCATG  1195
      |||||||||||||||||||| ||| ||| | ||| || | ||||||||||
seq2  TACTCATCACATGCTCTGGAGAAT-CTG-CGTCTCTCTCCATGAGGCATG  1159

seq1  AATAAAATCAAGC  1208
       ||||| ||||||
seq2  -ATAAATTCAAGC  1171


seq1: chr6_45334508_45335708
seq2: B6Ng01-313K15.g_65_1230 (reverse)

seq1  CACCCCCCCAACTCATTTCACTCCTGGCGATGTCTGAAAAGCACTTGTGT  50
      ||||||||||| ||||    |  || ||||  ||      |  | |||  
seq2  CACCCCCCCAAATCAT----CATCT-GCGAGTTC------GAGCCTGT--  37

seq1  TAGGTCAGAAATCATGAATTTGTTCAGCCTTTAAGAAATGGGGTTGATCT  100
         ||| ||| ||||||   || || ||  || |||||||||  ||||| 
seq2  --AGTCTGAATTCATGA---TGGTCGGC--TTTAGAAATGGG--TGATC-  77

seq1  TAGCCACAGTTCTTAGACTGTCCCTTTAAGGTGTATACTCTGTACATTAT  150
      ||||||||| || |||||||||   |||| ||||||||||||||||||||
seq2  TAGCCACAGGTC-TAGACTGTC---TTAA-GTGTATACTCTGTACATTAT  122

seq1  ATTGCTCATCTTTCATAGAACAGGTGTAAGGTCAATAACCGGGGTGGAAC  200
      || ||||||| ||||||||||| |||||| ||||||||||||||||||||
seq2  ATGGCTCATC-TTCATAGAACA-GTGTAA-GTCAATAACCGGGGTGGAAC  169

seq1  TGCTCTGTGGCAGCTTTTGAAAAATATGGTTCTGTTGGAGCCCCTTGCCA  250
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  TGCTCTGTGGCAGCTTT--GAAAATATGGTTCTGTTGGAGCCCCTTGCCA  217

seq1  TTTGCCCTCAAAGCTTCCTTTTGCTTCACCTTTGTGAGATTTTTTTTTGA  300
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTG-CCTCAAAGCTTCC-TTTGCTTCACCTTTGTGAGATTTTTTTTTGA  265

seq1  AGTACTTGGTTCCCAAATATTTACTGTGTCACTGTGTGATAGTATTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGGTTCCCAAATATTTACTGTGTCACTGTGTGATAGTATTAATG  315

seq1  ATGGGCAAACAAGGAAACGTAAAATGACATAGTGTGTGCCTAAGTAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAAACAAGGAAACGTAAAATGACATAGTGTGTGCCTAAGTAATCC  365

seq1  AAGTGAATACTTCTAAGACTGTGTCCCATAATTGGAAGGGCCACTTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATACTTCTAAGACTGTGTCCCATAATTGGAAGGGCCACTTAGAT  415

seq1  TACAGGCTTTTCAAATAAAGGAATTAAAGGAACCACATCACTTTAGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCTTTTCAAATAAAGGAATTAAAGGAACCACATCACTTTAGCTAA  465

seq1  CCTCCTTCAGTGTGAATCTTAATTAGCTTGCTGAATGGAGTACTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCAGTGTGAATCTTAATTAGCTTGCTGAATGGAGTACTTTCTTT  515

seq1  TTAACCTATAAACTTCTGTTTAGACACATGGATTATCTGAAATTGATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTATAAACTTCTGTTTAGACACATGGATTATCTGAAATTGATTTA  565

seq1  CCAATAATAAAAAAAAAATGTCCTGAGTTTGTTCATTGTTGTCAAGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATAAAAAAAAAATGTCCTGAGTTTGTTCATTGTTGTCAAGCCAT  615

seq1  TCCCTGACAAATGGCCCATTTTTGTTGTTGTTATTTAGCACAGGATCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGACAAATGGCCCATTTTTGTTGTTGTTATTTAGCACAGGATCTTA  665

seq1  AAACATGAGAAAAGTATATACCTTAAAGAGAAGCAGCTACATGCTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAGAAAAGTATATACCTTAAAGAGAAGCAGCTACATGCTGAGAA  715

seq1  GTATAAAATTAACACATTAAAATATATTTGTTTTCATGCTCTATTAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAATTAACACATTAAAATATATTTGTTTTCATGCTCTATTAAATC  765

seq1  ACTTTGAGAAAATTTGAAAGTAATTGCTGATAGGTTTTGAACAAACATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGAAAATTTGAAAGTAATTGCTGATAGGTTTTGAACAAACATTG  815

seq1  CTTAGGTAGTGTTGCCTGGAACGATCTCAAAGGAGAGATTGGAGAGATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTAGTGTTGCCTGGAACGATCTCAAAGGAGAGATTGGAGAGATAA  865

seq1  AATATCACTAAGAGATCAAGAATGATGGGTACTGTAGAAGGGAAAAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACTAAGAGATCAAGAATGATGGGTACTGTAGAAGGGAAAAGGAA  915

seq1  AGGAAGGACTCATGTGAGAAAACATTTAATTATGTGGTAAAGAAAAAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGACTCATGTGAGAAAACATTTAATTATGTGGTAAAGAAAAAACT  965

seq1  CACAACATTTACTAGGCTGAATGGCAAACATGTATTCTCCCAACACTCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATTTACTAGGCTGAATGGCAAACATGTATTCTCCCAACACTCAA  1015

seq1  AACGTAGCAGCAAGAAGATGAAGAGTTCCACCTGAGCTATATAATGTACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAGCAGCAAGAAGATGAAGAGTTCCACCTGAGCTATATAATGTACT  1065

seq1  CATGGCAAGCAGGCCTTGCATGAACAGGCTCAATATCAAACTGAATTCAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAAGCAGGCCTTGCATGAACAGGCTCAATATCAAACTGAATTCAA  1115

seq1  TTAGGAAAGTGTCAGATATGTATTTTACCGCCAACCCCTCTAAGTGAATT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAGTGTCAGATATGTATTTTACCGCCAACCCCTCTAAGTGAATT  1165

seq1  C  1201
      |
seq2  C  1166


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