BAC Information

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BAC

Clone NameB6Ng01-314A04
Chromosome6 (Build37)
Map Location 33,195,036 - 33,339,027
singlet/doubletdoublet
Overlap geneGm1401, Exoc4
Upstream genePlxna4, Chchd3, LOC100039118
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314A04.bB6Ng01-314A04.g
ACCGA105067GA105068
length1,0721,132
definitionB6Ng01-314A04.b B6Ng01-314A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,195,036 - 33,196,112)(33,337,903 - 33,339,027)
sequence
gaattcactttgtagaccaggctggcctcgaactcagaaatccacctgcc
tctgccgcctgagtgctgggattaaaggcatgcgccaccacgcccggttg
ggtagccatttttgcacatggccgaccctgcatgcagacttcttcttttt
gagaaataaaagcactcttgccaattgcataagtgagtggtggtccctgt
gaggtgcttctggacgtaacacctgtggcttgccggtttggctggtcagt
gaacagcaggatcttcctatctctgcttccttgatgctgaagttgtcagt
ttatttcacgattgctggcgtttggcctgggttccgatccttataccttt
gtggtaagcacttatttactgaggcatttcctcgctcctccacatttttc
cccctcttccaagctagtgtacactgttcagggatttctgacctcacatg
gatcttagaaccagctattccactgcggcgcaggtttgccattgttgctg
catctgtttctcatctgtgatgttttacatgtgcctcattcctttgtttt
gttttgtttcggaaatatgttgtagttttttacatatacatatgtgactt
tcctgttcatattcatccctgtgttttattattttttgcccctgttaagt
tgggattatttggtttttttttttctttccttttcctttcctttttttcc
ttctttcctccccacaaccccttccaaggtctttctgcttagttctgaat
gttctggaactctctgtgtaaagcaggctggcctcgaactcacggagcta
taccagcaactaccttctaggtgctgggattaaaggtgtgtggtaccatg
cctggctaggttcatttatttttaagattgctctttcttactgtatagga
atatctctaaattgttgttgttcactttgtatcctgtgacattgctgaag
tttttatactagctccagcagtgttttatgttctttatatacattctata
aaatcctatattcacaaatgtaggtggttttggtctaacattagaaacta
gatgctctctcctctctctctc

gaattctttttatttcaaaacaccaattatattaattcgctcttaataaa
atcttatgtgagtaaaaatacatgacacctagtgatactgaggaggtggg
ctggctgagaatcaggccaatacatgagagatagtacagacaagacctga
gtgttagcctatgtgcgaaaagatggagacagcacagagtctggggtaaa
tcatcccctaattctctaaaatgctcagctcttttctggttacaaatgat
gtgtaaactatctaggctcatctagtcactataattactccactctcatt
acaaactagatggtctttctccatcaatgctctgattataagctttggaa
caccttgaacattaaaaaaggcatttagatacgtgggcctccacattgta
gcctcttctttgagtacttccactgactagaaaccccatccctctcttaa
aagagtagaccccaacattagatggtctagtgattagtcagctctttaaa
ctaggaagggatctatctatattacttgggaattttagccaggtttttcc
tctatggaagctattaaaaactatttatctacttgagaactgttcaaatc
aattaaagaaactagtaatgagtccatcaaatcattccttagtggctctg
tgttccttagtggttccttccttaagagtatgaattccatatgctcttct
tcaataacaacatccaaagcaaaaaattcacgaaagacctcaacaccctt
gtcacctaaattaagaaacccttgtatactgctgaaccatcagccttttg
tttctgcattcattcacccacccacaggatttccaaatgttcgttatcac
cttccctttaatgccacaactgctatttgtatcatcagtggggcctcacc
ctcatgcttccgctacctcctccttcccttctttgttctcagcctcatta
caatatgaagaccctcaacacacatcttcttcagttcccctctactcaac
atcacttcataaccctcctgcaagaaaaagagtttatctttccttctttc
aaactgtagagttggtctttgttttttcttgccattcattgagtctactt
gaacggcatctaatggacggttctcatatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33195036_33196112
seq2: B6Ng01-314A04.b_43_1114

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCGCCTGAGTGCTGGGATTAAAGGCATGCGCCACCACGCCCGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCGCCTGAGTGCTGGGATTAAAGGCATGCGCCACCACGCCCGGTTG  100

seq1  GGTAGCCATTTTTGCACATGGCCGACCCTGCATGCAGACTTCTTCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCATTTTTGCACATGGCCGACCCTGCATGCAGACTTCTTCTTTTT  150

seq1  GAGAAATAAAAGCACTCTTGCCAATTGCATAAGTGAGTGGTGGTCCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAAAAGCACTCTTGCCAATTGCATAAGTGAGTGGTGGTCCCTGT  200

seq1  GAGGTGCTTCTGGACGTAACACCTGTGGCTTGCCGGTTTGGCTGGTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTTCTGGACGTAACACCTGTGGCTTGCCGGTTTGGCTGGTCAGT  250

seq1  GAACAGCAGGATCTTCCTATCTCTGCTTCCTTGATGCTGAAGTTGTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAGGATCTTCCTATCTCTGCTTCCTTGATGCTGAAGTTGTCAGT  300

seq1  TTATTTCACGATTGCTGGCGTTTGGCCTGGGTTCCGATCCTTATACCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCACGATTGCTGGCGTTTGGCCTGGGTTCCGATCCTTATACCTTT  350

seq1  GTGGTAAGCACTTATTTACTGAGGCATTTCCTCGCTCCTCCACATTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGCACTTATTTACTGAGGCATTTCCTCGCTCCTCCACATTTTTC  400

seq1  CCCCTCTTCCAAGCTAGTGTACACTGTTCAGGGATTTCTGACCTCACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTCCAAGCTAGTGTACACTGTTCAGGGATTTCTGACCTCACATG  450

seq1  GATCTTAGAACCAGCTATTCCACTGCGGCGCAGGTTTGCCATTGTTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAGAACCAGCTATTCCACTGCGGCGCAGGTTTGCCATTGTTGCTG  500

seq1  CATCTGTTTCTCATCTGTGATGTTTTACATGTGCCTCATTCCTTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTTCTCATCTGTGATGTTTTACATGTGCCTCATTCCTTTGTTTT  550

seq1  GTTTTGTTTCGGAAATATGTTGTAGTTTTTTACATATACATATGTGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTCGGAAATATGTTGTAGTTTTTTACATATACATATGTGACTT  600

seq1  TCCTGTTCATATTCATCCCTGTGTTTTATTATTTTTTGCCCCTGTTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCATATTCATCCCTGTGTTTTATTATTTTTTGCCCCTGTTAAGT  650

seq1  TGGGATTATTTGGTTTTTTTTTTTCTTTCCTTTTCCTTTCCTTTTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTATTTGGTTTTTTTTTTTCTTTCCTTTTCCTTTCCTTTTTTTCC  700

seq1  TTCTTTCCTCCCCACAACCCCTTCCAAGGTCTTTCTGCTTAGTTCTGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTCCCCACAACCCCTTCCAAGGTCTTTCTGCTTAGTTCTGAAT  750

seq1  GTTCTGGAACTCTCTGTGTAAAGCAGGCTGGCCTCGAACTCACGGAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAACTCTCTGTGTAAAGCAGGCTGGCCTCGAACTCACGGAGCTA  800

seq1  TACCAGCAACTACCTTCTAGGTGCTGGGATTAAAGGTGTGTGGTACCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCAACTACCTTCTAGGTGCTGGGATTAAAGGTGTGTGGTACCATG  850

seq1  CCTGGCTAGGTTCATTTATTTTTAAGATTGCTCTTTCTTACTGTATAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTAGGTTCATTTATTTTTAAGATTGCTCTTTCTTACTGTATAGGA  900

seq1  ATATCTCTAAATTGTTGTTGTTCACTTTGTATCCTGTGACATTGCTGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTAAATTGTTGTTGTTCACTTTGTATCCTGTGACATTGCTGAAG  950

seq1  TTTTTATACTAGCTCCAGCAGTGTTTTATGTTCTTTATAATACATTCTAT  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTTATACTAGCTCCAGCAGTGTTTTATGTTCTTTAT-ATACATTCTAT  999

seq1  AAAATCCTATTATTCACAAATGTAGGTGGTTTTGTTCCTACATTTAGAAA  1050
      ||||||||| |||||||||||||||||||||||| ||  ||| |||||||
seq2  AAAATCCTA-TATTCACAAATGTAGGTGGTTTTGGTCTAACA-TTAGAAA  1047

seq1  CTAGATGCTTCTCTCTCTCTCTCTCTC  1077
      |||||||| |||||| |||||||||||
seq2  CTAGATGC-TCTCTC-CTCTCTCTCTC  1072


seq1: chr6_33337903_33339027
seq2: B6Ng01-314A04.g_64_1195 (reverse)

seq1  AGTATATGAGAACGGTCAATTAGAAGGCGTTTCAGTAGACTCAAGGATTG  50
      ||||||||||||| ||| |||||| | ||||  ||||||||||| || ||
seq2  AGTATATGAGAACCGTCCATTAGATGCCGTTCAAGTAGACTCAATGAATG  50

seq1  ----CAGAAAACAGA---CAACTCTACAGTTTTGAAAGAAGGAAAGAT-A  92
           | |||||| |   ||||||||||| |||||||||||||||||| |
seq2  GCAAGAAAAAACAAAGACCAACTCTACAG-TTTGAAAGAAGGAAAGATAA  99

seq1  ACTC-TTTTCTTGCAGGGAGGGTTATGAGGTGATGTTGGAGTAGAGGGGA  141
      |||| |||||||||| |||||||||||| |||||||| ||||||||||||
seq2  ACTCTTTTTCTTGCA-GGAGGGTTATGAAGTGATGTT-GAGTAGAGGGGA  147

seq1  ACTGAAG-AGATGTGTGTTGAGGGTCTTCATATTGTAATGAGGCTGAGAA  190
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAAGATGTGTGTTGAGGGTCTTCATATTGTAATGAGGCTGAGAA  197

seq1  CAAAGAAGGGAAGGAGGAGGTAGCGGAAGCATGAGGGTGAGGCCCCACTG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGGGAAGGAGGAGGTAGCGGAAGCATGAGGGTGAGGCCCCACTG  247

seq1  ATGATACAAATAGCAGTTGTGGCATTAAAGGGAAGGTGATAACGAACATT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACAAATAGCAGTTGTGGCATTAAAGGGAAGGTGATAACGAACATT  297

seq1  TGGAAATCCTGTGGGTGGGTGAATGAATGCAGAAACAAAAGGCTGATGGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCCTGTGGGTGGGTGAATGAATGCAGAAACAAAAGGCTGATGGT  347

seq1  TCAGCAGTATACAAGGGTTTCTTAATTTAGGTGACAAGGGTGTTGAGGTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTATACAAGGGTTTCTTAATTTAGGTGACAAGGGTGTTGAGGTC  397

seq1  TTTCGTGAATTTTTTGCTTTGGATGTTGTTATTGAAGAAGAGCATATGGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTGAATTTTTTGCTTTGGATGTTGTTATTGAAGAAGAGCATATGGA  447

seq1  ATTCATACTCTTAAGGAAGGAACCACTAAGGAACACAGAGCCACTAAGGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACTCTTAAGGAAGGAACCACTAAGGAACACAGAGCCACTAAGGA  497

seq1  ATGATTTGATGGACTCATTACTAGTTTCTTTAATTGATTTGAACAGTTCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGATGGACTCATTACTAGTTTCTTTAATTGATTTGAACAGTTCT  547

seq1  CAAGTAGATAAATAGTTTTTAATAGCTTCCATAGAGGAAAAACCTGGCTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGATAAATAGTTTTTAATAGCTTCCATAGAGGAAAAACCTGGCTA  597

seq1  AAATTCCCAAGTAATATAGATAGATCCCTTCCTAGTTTAAAGAGCTGACT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCAAGTAATATAGATAGATCCCTTCCTAGTTTAAAGAGCTGACT  647

seq1  AATCACTAGACCATCTAATGTTGGGGTCTACTCTTTTAAGAGAGGGATGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTAGACCATCTAATGTTGGGGTCTACTCTTTTAAGAGAGGGATGG  697

seq1  GGTTTCTAGTCAGTGGAAGTACTCAAAGAAGAGGCTACAATGTGGAGGCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTAGTCAGTGGAAGTACTCAAAGAAGAGGCTACAATGTGGAGGCC  747

seq1  CACGTATCTAAATGCCTTTTTTAATGTTCAAGGTGTTCCAAAGCTTATAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTATCTAAATGCCTTTTTTAATGTTCAAGGTGTTCCAAAGCTTATAA  797

seq1  TCAGAGCATTGATGGAGAAAGACCATCTAGTTTGTAATGAGAGTGGAGTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCATTGATGGAGAAAGACCATCTAGTTTGTAATGAGAGTGGAGTA  847

seq1  ATTATAGTGACTAGATGAGCCTAGATAGTTTACACATCATTTGTAACCAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGTGACTAGATGAGCCTAGATAGTTTACACATCATTTGTAACCAG  897

seq1  AAAAGAGCTGAGCATTTTAGAGAATTAGGGGATGATTTACCCCAGACTCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCTGAGCATTTTAGAGAATTAGGGGATGATTTACCCCAGACTCT  947

seq1  GTGCTGTCTCCATCTTTTCGCACATAGGCTAACACTCAGGTCTTGTCTGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTCTCCATCTTTTCGCACATAGGCTAACACTCAGGTCTTGTCTGT  997

seq1  ACTATCTCTCATGTATTGGCCTGATTCTCAGCCAGCCCACCTCCTCAGTA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTCTCATGTATTGGCCTGATTCTCAGCCAGCCCACCTCCTCAGTA  1047

seq1  TCACTAGGTGTCATGTATTTTTACTCACATAAGATTTTATTAAGAGCGAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGGTGTCATGTATTTTTACTCACATAAGATTTTATTAAGAGCGAA  1097

seq1  TTAATATAATTGGTGTTTTGAAATAAAAAGAATTC  1125
      |||||||||||||||||||||||||||||||||||
seq2  TTAATATAATTGGTGTTTTGAAATAAAAAGAATTC  1132


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