BAC Information

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BAC

Clone NameB6Ng01-315D20
Chromosome6 (Build37)
Map Location 31,056,025 - 31,184,295
singlet/doubletdoublet
Overlap geneLOC100038973, AB041803
Upstream geneNrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14
Downstream geneMkln1, Podxl, EG619959, LOC620104, 1700012A03Rik, Plxna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315D20.bB6Ng01-315D20.g
ACCGA105941GA105942
length946943
definitionB6Ng01-315D20.b B6Ng01-315D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,183,351 - 31,184,295)(31,056,025 - 31,056,967)
sequence
gaattcaagttgtgcccactttagttgatgcttgctcctcagcagaacga
tattgtcagttgagtctagataaattgaagtttgccattactccctatgt
tatgtccctgtgccactaatttggtcatctgtattgggaaaacattattg
atgtggccctccaaggctcccaagacactctagaaattgataatacatag
ccaatggagagagggtaggaaccaaagctggagtatgagtgctccatatg
gcattgctaatgaatacagaggccagcctgaaacaagaaagctgggccgt
gaaaggcctgttgtctcacaccacgataaaaacgcaggaagcttttatca
tgaaggagatcagccttattctagcaggtctctcatgagggcacctgcaa
tgtgcctcacgggggagaacacatctggtgtcattgttaaaatacagatg
cctgtgcatggcagctagacagagctgagatcaacaagacattcatccat
ggtgaaacaagctagtgctcatagaatcatgccactggcggaagactggc
gttcgacacacaacgccctaatgcagagggagggacagagcttgtgtggc
cgaagctcagaattagtagggaccataatatatgcaaactttaggtgtct
gtttggaaaggagaatcatgtatttttcattctagttacgattggcattt
aagtgctgcggtgagggatgctgtgaagctaagcccatatgtaagtggat
cttcagatgctactcaccgtctggttgctatggacaactgggcagctgcc
ttaccggaatgatctggtgacgatatctcttcagcttgcttttcgccaat
atgttcctaatgatgctagctgggtttcgagacgtgttctgtgactctga
ctttcgacgttactatgccgtgcctgactgtgcctctcgtgtgcga
gaattcatgcatgtatgcaagtgtgtaggggcatgatctatgtggtgggg
gttttggagagctgtatctgtaggaagcggggtgagtgagagagcctgca
gaaagtgcttctgcttccttctggaatgcaatagatagaatgctctcgtc
ttctccatgggcttctctcctttctctcgtaggttttcagttgactgggc
caagcacaccggtgttaatatgcttaagtcaaaatccccactgactttaa
tgctaatctcatttcagaatacctccgcagggacacctaactgtttgacc
aagcccctgggtcacatggccctgccacatgggccaccacactgtccttt
ggaagcgggcagttctctgctgcctctgggctgcctggcgcctttgcttt
ttgttagagaacacaggagaggctagggaggccttggaggtgaatgacaa
gtatgcagaaagcttccaaatgcttctcgaagacacggttctaggcagac
atgaatcatatggatgcatccaagccccaaggtaaataaatgtccaaagt
ggccgtgtccatacatagcagtctgggtgccaagcagattctgggaagaa
tgagtgttttccctggctggcagaactgttccaggcttcctgctgtgaag
ggattcaagtccacttcctcctgccacacctagggatgcagagaattcct
gtgggagagtcgctgacttcatgacataccaagggagatgttctcagtgc
ggcttattaggtcatcagacactggagctaagcatgtacttccgcatgtc
ccccaccctgtttgtagaacgaagctgttcagaccgaaaccacagaattt
gtctgtgtactcagggaaaaggtaccctgaactgaggtgctgatctaagt
cacctgcatgccatgatatataatatcatgtatatatagatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_31183351_31184295
seq2: B6Ng01-315D20.b_42_987 (reverse)

seq1  TCGCACACGAGAGGCACAGTCAGGCAGGGCAGAGTAACCTAG-AAGTCAG  49
      |||||||||||||||||||||||||| |||| |||||| | | |||||||
seq2  TCGCACACGAGAGGCACAGTCAGGCACGGCATAGTAACGTCGAAAGTCAG  50

seq1  AGTCACAGACCATGTCTAGAAACCCA-CAAGCCTCATAAGGAACATTTGG  98
      ||||||||| || |||| |||||||| | ||| |||| |||||||| | |
seq2  AGTCACAGAACACGTCTCGAAACCCAGCTAGCATCATTAGGAACATATTG  100

seq1  GCGAAAATAAAAGCAGAAGCGATATTGTCACCGGAGCATTCCGGTAAGGC  148
      |||||||   |||| |||| ||||| |||||| || ||||||||||||||
seq2  GCGAAAA-GCAAGCTGAAGAGATATCGTCACCAGATCATTCCGGTAAGGC  149

seq1  AGCTGGCCAGTTGTCCATAGCAACCAGCTGCTGAGTTGCCTATGAAGCTC  198
      ||||| |||||||||||||||||||||  | ||||| || | ||||| ||
seq2  AGCTGCCCAGTTGTCCATAGCAACCAGACGGTGAGTAGCATCTGAAGATC  199

seq1  CGCCTACCTAAGGGCCTAGCTTCACAGCATCCCTCACCGCAGCACTTAAA  248
      | | ||| || |||| ||||||||||||||||||||||||||||||||||
seq2  CACTTACATATGGGCTTAGCTTCACAGCATCCCTCACCGCAGCACTTAAA  249

seq1  TGCCAATCGTAACTGGGTTGAAAAATACATGATTCTCCCTTCCAAACAGA  298
      |||||||||||||| |  |||||||||||||||||||| |||||||||||
seq2  TGCCAATCGTAACTAGAATGAAAAATACATGATTCTCCTTTCCAAACAGA  299

seq1  CACCTAAAGGTTGCATATATTATGGTCCCTACTAATTCTGAGCTTCGGCC  348
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAAGTTTGCATATATTATGGTCCCTACTAATTCTGAGCTTCGGCC  349

seq1  ACACAAGCTCTGTCCCTCCCTCTGCCTTTGGGCGTTGTGTGTCGAACGCC  398
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  ACACAAGCTCTGTCCCTCCCTCTGCATTAGGGCGTTGTGTGTCGAACGCC  399

seq1  AGTCTTCCGCCAGTGGCCTGCTTCTCTGAGCACTAGCCTGTTTCACCATG  448
      ||||||||||||||||| || |||| ||||||||||| ||||||||||||
seq2  AGTCTTCCGCCAGTGGCATGATTCTATGAGCACTAGCTTGTTTCACCATG  449

seq1  GCTGAATGTCTTGTTGATCTCAGCTCTGTCTAGCTGCCATGCACAGGCAT  498
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGTCTTGTTGATCTCAGCTCTGTCTAGCTGCCATGCACAGGCAT  499

seq1  CTGTATTCTACTGCTGACACCAGATGTGTTCTCCCCCGTGAGGCACATTG  548
      ||||||| ||    ||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTTAACAATGACACCAGATGTGTTCTCCCCCGTGAGGCACATTG  549

seq1  CAGGTGCCCTCATGAGAGACCTGCTAGAATAAGGCTGATCTCCTTCATGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCCTCATGAGAGACCTGCTAGAATAAGGCTGATCTCCTTCATGA  599

seq1  TAAAAGCTTCCTGCGTTTTTATCGTGGTGTGAGACAACAGGCCTTTCACG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTTCCTGCGTTTTTATCGTGGTGTGAGACAACAGGCCTTTCACG  649

seq1  GCCCAGCTTTCCTGTTCCAGGCTGGCCTCTGTATTCACTAGCAATGCCAT  698
      ||||||||||| |||| |||||||||||||||||||| ||||||||||||
seq2  GCCCAGCTTTCTTGTTTCAGGCTGGCCTCTGTATTCATTAGCAATGCCAT  699

seq1  ATGGAGCACTCCTACTCCAGCTTTGGTTCCTACCCTCTCTCCATTGGCTA  748
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCACTCATACTCCAGCTTTGGTTCCTACCCTCTCTCCATTGGCTA  749

seq1  TGTATTATCAATTTCTAGCGTGTCTTGTGAGCCTTCGATGGCAACATCAA  798
      |||||||||||||||||| |||||||| ||||||| || ||| |||||||
seq2  TGTATTATCAATTTCTAGAGTGTCTTGGGAGCCTTGGAGGGCCACATCAA  799

seq1  TAATGTTTTCCCAATACAGATGACCAAATTAGTGGCACAGGGACATAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTCCCAATACAGATGACCAAATTAGTGGCACAGGGACATAACA  849

seq1  TAGGGAGTAATGGCAAACTTCAATTTATATAGAATCAACTGACAATATCG  898
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  TAGGGAGTAATGGCAAACTTCAATTTATCTAGACTCAACTGACAATATCG  899

seq1  TTCTGCTGAGGAGCAAGCATTAAATAAAGTTGGCACAACTTGAATTC  945
      |||||||||||||||||||| || |||||| ||||||||||||||||
seq2  TTCTGCTGAGGAGCAAGCATCAACTAAAGTGGGCACAACTTGAATTC  946

seq1: chr6_31056025_31056967
seq2: B6Ng01-315D20.g_66_1008

seq1  GAATTCATGCATGTATGCAAGTGTGTAGGGGCATGATCTATGTGGTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCATGTATGCAAGTGTGTAGGGGCATGATCTATGTGGTGGGG  50

seq1  GTTTTGGAGAGCTGTATCTGTAGGAAGCAGGGTGAGTGAGAGAGCCTGCA  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTTTGGAGAGCTGTATCTGTAGGAAGCGGGGTGAGTGAGAGAGCCTGCA  100

seq1  GAAAGTGCTTCTGCTTCCTTCTGGAATGCAATAGATAGAATGCTCTCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCTTCTGCTTCCTTCTGGAATGCAATAGATAGAATGCTCTCGTC  150

seq1  TTCTCCATGGGCTTCTCTCCTTTCTCTCTTAGGTTTTCAGTTGACTGGGC  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCTCCATGGGCTTCTCTCCTTTCTCTCGTAGGTTTTCAGTTGACTGGGC  200

seq1  CAAGTACACCGGTGTTAATATGCTTAAGTCAAAATCCCCACTGACTTTAA  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACACCGGTGTTAATATGCTTAAGTCAAAATCCCCACTGACTTTAA  250

seq1  TGCTAATCTCATTTCAAAATACCTCCGCAGGGACACCTAGCTGTTTGACC  300
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  TGCTAATCTCATTTCAGAATACCTCCGCAGGGACACCTAACTGTTTGACC  300

seq1  AAACCCCTGGGTCACATGGCCCTGCCACATGGGCCACCACACTGTCCTTT  350
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTGGGTCACATGGCCCTGCCACATGGGCCACCACACTGTCCTTT  350

seq1  GGAAGCGGGCAGTTCTCTGCTGCCTCTGGGCTGCATGGCGCCTTTGCTTT  400
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGAAGCGGGCAGTTCTCTGCTGCCTCTGGGCTGCCTGGCGCCTTTGCTTT  400

seq1  TTGTTAGAGAACACAGGAGAGGCTAGGGAGGCCTTGGAGGTGAATGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAGAACACAGGAGAGGCTAGGGAGGCCTTGGAGGTGAATGACAA  450

seq1  GTATGCAGAAAGCTTCAAAATGCATCTCGAAGACACGGCTCTAGGCAGAG  500
      |||||||||||||||| |||||| |||||||||||||| |||||||||| 
seq2  GTATGCAGAAAGCTTCCAAATGCTTCTCGAAGACACGGTTCTAGGCAGAC  500

seq1  ATGAATCAGATGGATGCATCCAAGCCCCAAGGTAAATAAATGTCCAAAGT  550
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCATATGGATGCATCCAAGCCCCAAGGTAAATAAATGTCCAAAGT  550

seq1  GGCCGTGTCCAAACAGAGCAGTCTGGGTGCCAAGCAGATTCTGGGAAGAA  600
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  GGCCGTGTCCATACATAGCAGTCTGGGTGCCAAGCAGATTCTGGGAAGAA  600

seq1  TGAGTGTTTTCCCTGGCTGGCAGAGCTGTTCCAGGCTTCCTGCTGTGAAG  650
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGAGTGTTTTCCCTGGCTGGCAGAACTGTTCCAGGCTTCCTGCTGTGAAG  650

seq1  GGCTTCAAGTCCACTTCCTCCTGCCACACCTAGGGATGCAGAGAAGTCCT  700
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGATTCAAGTCCACTTCCTCCTGCCACACCTAGGGATGCAGAGAATTCCT  700

seq1  GTGGGAGAGTCGCTGACTTCAGGACAGACCAAGGGAGATGTTCTCAGTGC  750
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  GTGGGAGAGTCGCTGACTTCATGACATACCAAGGGAGATGTTCTCAGTGC  750

seq1  GGCTTATTAGATCATTAGTCACTGGAGCTAAGCAGGCAGCAGCAGCATGT  800
      |||||||||| |||| || ||||||||||||||| | | |  | ||||||
seq2  GGCTTATTAGGTCATCAGACACTGGAGCTAAGCATGTA-CTTCCGCATGT  799

seq1  CCCCCACCCTGTTTGTAGAACGAAGCTGTTAAGACCTAAACCACAGAA-T  849
      |||||||||||||||||||||||||||||| ||||| ||||||||||| |
seq2  CCCCCACCCTGTTTGTAGAACGAAGCTGTTCAGACCGAAACCACAGAATT  849

seq1  TATCTGTGTACTCAGGGAAAAGGTA-CCTGAAATGTAGCTGCTGATTTAA  898
      | ||||||||||||||||||||||| |||||| || || ||||||| |||
seq2  TGTCTGTGTACTCAGGGAAAAGGTACCCTGAACTG-AGGTGCTGATCTAA  898

seq1  TTCACATGCATGCCATGATATATAATATCATGTATATATATATAT  943
       |||| |||||||||||||||||||||||||||||||||| ||||
seq2  GTCACCTGCATGCCATGATATATAATATCATGTATATATAGATAT  943