BAC Information

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BAC

Clone NameB6Ng01-316E14
Chromosome6 (Build37)
Map Location 110,256,563 - 110,387,619
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316E14.bB6Ng01-316E14.g
ACCGA106719GA106720
length979556
definitionB6Ng01-316E14.b B6Ng01-316E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,256,563 - 110,257,531)(110,387,058 - 110,387,619)
sequence
gaattctttgttcagctctaagccccatttttaatggggttcttttgaga
actattttaacaaatttggctaataagttcacaatactagatagttattg
tcaagttgatccaagctagaatcctttgtgaaataagactctcagttgaa
aaactgcccccataagatttgtatgcaggcaaatctatgggatactttct
tgattaataattgatgtggtagaccccaactcatggcaggggcggggggg
cagaaaatcccctgggcagaaggtcctagttgatatggtataagaaaaca
gtttgagaagccataaggagaaatccacggtgaggctaagggtagccagt
gttttaggctgagaaagccatggtgttatatctgggtgatggtgttttat
cacagcaatagaaagctaactaggataatagttttggaacgtaaaattct
aatggaaaggaggttttcttagaggtagtgtcttagctgattgattgttg
ttcactatatagtggatctttgcttagactgagcttattacataaattga
tgtagattttgaagaaattgttcattgcatgatgttgaaataaagttatt
tttgaaagactaccgagtatgaaatcatttcacagatttaaacatgaaaa
agacaattttgtttgcagggaatggacatacaccacagtgaaggagaaat
cacagcccagtttctaataacatagcacccggcatctcataggatggatg
gtgtatataggagtgaatctacagtctaaattgtgtcaaatcgaaataat
cagaataggcttcttaaaagaaattgcatttgaaatcgttctcagagaaa
aactttttacctttttgtcagagaaagagggtaggcaatctagcaagaaa
agggacaaactttccattttaataattttaatagcccataaccctcccct
gcccttacaaatagaagatagaaattata

ttttcaacctggcaacagtcaaagaagccctgcaaagaacaaagggacag
gcagaataagaatagcaacaaaaatactgagtttctggagttatactttg
tcccggggaacagataagtcactgtcctcgttattgtggaattccatgca
ggagggaacatatgaagcaagggtcttaccacttactaaatgagtgagag
atggggaataaaatagagtttgagcaatgagtcattgctagatgttaggt
ttatatttttacgtatttttgttgagattcattcatgctcattactgaaa
tcatagtaagtgttcgaaggaggaagcctacacaaagaatgtcagcacag
tggctaggaaagcaaagaaaaatgatttgcaattttttacagagatataa
ttatttcatttacttgaaaagaaacagacaagagaaagatgtaggtcagg
aagaattgacttagtctgacaaggagcatcataaataaaacaatcctgac
tgggatcaaaccactgtatatacgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110256563_110257531
seq2: B6Ng01-316E14.b_45_1023

seq1  GAATTCTTTGTTCAGCTCTAAGCCCCATTTTTAATGGGGTTCTTTTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTAAGCCCCATTTTTAATGGGGTTCTTTTGAGA  50

seq1  ACTATTTTAACAAATTTGGCTAATAAGTTCACAATACTAGATAGTTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTAACAAATTTGGCTAATAAGTTCACAATACTAGATAGTTATTG  100

seq1  TCAAGTTGATCCAAGCTAGAATCCTTTGTGAAATAAGACTCTCAGTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGATCCAAGCTAGAATCCTTTGTGAAATAAGACTCTCAGTTGAA  150

seq1  AAACTGCCCCCATAAGATTTGTATGCAGGCAAATCTATGGGATACTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCCCCCATAAGATTTGTATGCAGGCAAATCTATGGGATACTTTCT  200

seq1  TGATTAATAATTGATGTGGTAGACCCCAACTCATGGCAGGGGCGGGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATAATTGATGTGGTAGACCCCAACTCATGGCAGGGGCGGGGGGG  250

seq1  CAGAAAATCCCCTGGGCAGAAGGTCCTAGTTGATATGGTATAAGAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCCCCTGGGCAGAAGGTCCTAGTTGATATGGTATAAGAAAACA  300

seq1  GTTTGAGAAGCCATAAGGAGAAATCCACGGTGAGGCTAAGGGTAGCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGAAGCCATAAGGAGAAATCCACGGTGAGGCTAAGGGTAGCCAGT  350

seq1  GTTTTAGGCTGAGAAAGCCATGGTGTTATATCTGGGTGATGGTGTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGGCTGAGAAAGCCATGGTGTTATATCTGGGTGATGGTGTTTTAT  400

seq1  CACAGCAATAGAAAGCTAACTAGGATAATAGTTTTGGAACGTAAAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAATAGAAAGCTAACTAGGATAATAGTTTTGGAACGTAAAATTCT  450

seq1  AATGGAAAGGAGGTTTTCTTAGAGGTAGTGTCTTAGCTGATTGATTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAGGAGGTTTTCTTAGAGGTAGTGTCTTAGCTGATTGATTGTTG  500

seq1  TTCACTATATAGTGGATCTTTGCTTAGACTGAGCTTATTACATAAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATATAGTGGATCTTTGCTTAGACTGAGCTTATTACATAAATTGA  550

seq1  TGTAGATTTTGAAGAAATTGTTCATTGCATGATGTTGAAATAAAGTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTTTGAAGAAATTGTTCATTGCATGATGTTGAAATAAAGTTATT  600

seq1  TTTGAAAGACTACCGAGTATGAAATCATTTCACAGATTTAAACATGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGACTACCGAGTATGAAATCATTTCACAGATTTAAACATGAAAA  650

seq1  AGACAATTTTGTTTGCAGGGAATGGACATACACCACAGTGAAGGAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTTTGTTTGCAGGGAATGGACATACACCACAGTGAAGGAGAAAT  700

seq1  CACAGCCCAGTTTCTAATAACATAGCACCCGGCATCTCATAGGATGGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCAGTTTCTAATAACATAGCACCCGGCATCTCATAGGATGGATG  750

seq1  GTGTATATAGGAGTGAATCTACAGTCTAAATTGTGTCAAATCGAAATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATAGGAGTGAATCTACAGTCTAAATTGTGTCAAATCGAAATAAT  800

seq1  CAGAATAGGCTTCTTAAAAGAAATTGCATTTGAAATCGTTCTCAGAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGGCTTCTTAAAAGAAATTGCATTTGAAATCGTTCTCAGAGAAA  850

seq1  A--CTTTTACC-TTTTGTCAGAGAAAGAGGGTAGGCAATCTAGCAAGAAA  897
      |   ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTACCTTTTTGTCAGAGAAAGAGGGTAGGCAATCTAGCAAGAAA  900

seq1  A-GGACAAAC-TTCCATTTTAATAATTTTAATAG-CCATAACC--TCCCT  942
      | |||||||| ||||||||||||||||||||||| ||||||||   ||||
seq2  AGGGACAAACTTTCCATTTTAATAATTTTAATAGCCCATAACCCTCCCCT  950

seq1  G-CCTTACAAATAGAAGATAG-AATTATA  969
      | ||||||||||||||||||| |||||||
seq2  GCCCTTACAAATAGAAGATAGAAATTATA  979


seq1: chr6_110387058_110387619
seq2: B6Ng01-316E14.g_70_631 (reverse)

seq1  CACACACACACACACACACACACACACACACACGTATATACAGTGGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACGTATATACAGTGGTTTG  50

seq1  ATCCCAGTCAGGATTGTTTTATTTATGATGCTCCTTGTCAGACTAAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGTCAGGATTGTTTTATTTATGATGCTCCTTGTCAGACTAAGTCA  100

seq1  ATTCTTCCTGACCTACATCTTTCTCTTGTCTGTTTCTTTTCAAGTAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCTGACCTACATCTTTCTCTTGTCTGTTTCTTTTCAAGTAAATG  150

seq1  AAATAATTATATCTCTGTAAAAAATTGCAAATCATTTTTCTTTGCTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTATATCTCTGTAAAAAATTGCAAATCATTTTTCTTTGCTTTCC  200

seq1  TAGCCACTGTGCTGACATTCTTTGTGTAGGCTTCCTCCTTCGAACACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACTGTGCTGACATTCTTTGTGTAGGCTTCCTCCTTCGAACACTTA  250

seq1  CTATGATTTCAGTAATGAGCATGAATGAATCTCAACAAAAATACGTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATTTCAGTAATGAGCATGAATGAATCTCAACAAAAATACGTAAAA  300

seq1  ATATAAACCTAACATCTAGCAATGACTCATTGCTCAAACTCTATTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACCTAACATCTAGCAATGACTCATTGCTCAAACTCTATTTTATT  350

seq1  CCCCATCTCTCACTCATTTAGTAAGTGGTAAGACCCTTGCTTCATATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTCTCACTCATTTAGTAAGTGGTAAGACCCTTGCTTCATATGTT  400

seq1  CCCTCCTGCATGGAATTCCACAATAACGAGGACAGTGACTTATCTGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGCATGGAATTCCACAATAACGAGGACAGTGACTTATCTGTTCC  450

seq1  CCGGGACAAAGTATAACTCCAGAAACTCAGTATTTTTGTTGCTATTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGACAAAGTATAACTCCAGAAACTCAGTATTTTTGTTGCTATTCTTA  500

seq1  TTCTGCCTGTCCCTTTGTTCTTTGCAGGGCTTCTTTGACTGTTGCCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTGTCCCTTTGTTCTTTGCAGGGCTTCTTTGACTGTTGCCAGGT  550

seq1  TGAAAAGAATTC  562
      ||||||||||||
seq2  TGAAAAGAATTC  562


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