BAC Information

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BAC

Clone NameB6Ng01-316J24
Chromosome6 (Build37)
Map Location 14,479,567 - 14,567,633
singlet/doubletdoublet
Overlap genenone
Upstream geneTmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
Downstream genePpp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316J24.bB6Ng01-316J24.g
ACCGA106974GA106975
length1,1011,092
definitionB6Ng01-316J24.b B6Ng01-316J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,479,567 - 14,480,665)(14,566,543 - 14,567,633)
sequence
gaattcagttttttttcttcttaatatagtttgttctagatactattgtc
gacttagtaaattgaaaaagaaaaatccggttaataaggtacagggacag
aaatgattattttatcattgattatgctagagtactgaaatgcaaaagtg
tgattattttttttgtcagaaatcagacaatatgaacgaaatcagtctct
accaattgggtgtttttaaaatgttatcttcagtttattcttgaaatgtt
tacatgtcagaaggaaaacaaattgagtgacaaatagattatgaaaaatt
atttattaaattatattctgagctaacatatctgcttaatgaccctggtg
ctgttgttgtcattgctgacatgttgatgcccaggaaactaagactcagg
gacattatataattttcctagagttataaatatagtacattggtttatct
ccaaactcaagtttctctgcgtacaatgctctcttccatttaataagctg
tctgccctgccatcagaaatagtgttatagaataagaagttgccagacat
ggtggcatgtgcctgtaaacctatcactcaagagaatgcagaaagcatgc
aaatttggtgtcagcttaagccacataataaaattctatctgaaaataaa
aactaattagacagtaattaaaaagttggttcattaatttcaaattttac
cacaatgcctacaaataggacacatgactctaaactttatccataaacca
gtaaaatggaagcaaatggtaatatcaaatgctaatacacaattttaaaa
tgcttctcaaggagttttgttaaaaataaaaaaacatgcatactttctgt
taatgcatagtgatataaaaataagctgtatttaatagtatgaatgtgcc
attatctcttattagttatcttcaagagtttttcccttgcattctaaact
gtaatttccatgactgaataaattttgcaaaacctattaaactacctgaa
tacgaaaataaactatctgtgatgtaaatacactagcttttgctagatgg
tgctgcaaacatactttgaaagctcttttgactggtgtttttctaataga
a

gaattcattcatgatccaaccacagataaggagagaaacttgactctaat
ggttgaatttgatagccagaatttatttagaaagaggaataacttctgtt
ttcctagcttataggctgctttatttaagtaatctataataatgtatttt
taaagctacaactaatacacactatgatgaatatgttatcaataatcatt
atcataaaaatttagacttagggaacaagccaaagggtagggccagaaaa
ggtgagaacagtagagccacaaattgtgaaaaagaaattcaaaacatact
tacgtttcacacaggttctatgtatgttactccctttcactacttaagtg
aaaatcgaatcatggggaaagggggggcttataatgaagaaaaatgtttc
atatattagcttcttaattagtagctcaaaaattgtaatatgattcaaaa
gtgatacccaaaattctgtgaaatggggccattaatgcctttagaccata
ttatttattttatgttttaccatttccccctgatctaggcatagaagatt
aaggtagcataatttggctgccagctcagactcagcattcttcatgctgc
ccagatgtacatggttatagcttctactatatgagccatggggacatatg
ggtttttcatcaaaagtgatgaatgaaaacatctttaaggaagctgaaaa
tattgcttgggaaacaagcttcttggactggaaagaattttatattgctt
tctttctctctctctttctcacaacctgcttattcagcggtctaaatgga
ctatgtgtatcaagagtgttgaaagacggggtacaaatgcataataagat
ccaaacaaaccacagcttatgatttatgccaaagaaactagcacgaaaaa
aaaggaaaagaacatattcagatagctaataaattttacttttggaacac
tggccaaatcatgacacaattaaaaatataaagtcactcatccattttta
agtatccaccaactttccttttcattaattggaaaacatcctgaagattg
taattgtcatgtccatctttttgaatgacaggattggatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_14479567_14480665
seq2: B6Ng01-316J24.b_47_1147

seq1  GAATTCAGTTTTTTTTCTTCTTAATATAGTTTGTTCTAGATACTATTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTTTTTCTTCTTAATATAGTTTGTTCTAGATACTATTGTC  50

seq1  GACTTAGTAAATTGAAAAAGAAAAATCCGGTTAATAAGGTACAGGGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGTAAATTGAAAAAGAAAAATCCGGTTAATAAGGTACAGGGACAG  100

seq1  AAATGATTATTTTATCATTGATTATGCTAGAGTACTGAAATGCAAAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTATTTTATCATTGATTATGCTAGAGTACTGAAATGCAAAAGTG  150

seq1  TGATTATTTTTTTTGTCAGAAATCAGACAATATGAACGAAATCAGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTTTTTTTGTCAGAAATCAGACAATATGAACGAAATCAGTCTCT  200

seq1  ACCAATTGGGTGTTTTTAAAATGTTATCTTCAGTTTATTCTTGAAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTGGGTGTTTTTAAAATGTTATCTTCAGTTTATTCTTGAAATGTT  250

seq1  TACATGTCAGAAGGAAAACAAATTGAGTGACAAATAGATTATGAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTCAGAAGGAAAACAAATTGAGTGACAAATAGATTATGAAAAATT  300

seq1  ATTTATTAAATTATATTCTGAGCTAACATATCTGCTTAATGACCCTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAAATTATATTCTGAGCTAACATATCTGCTTAATGACCCTGGTG  350

seq1  CTGTTGTTGTCATTGCTGACATGTTGATGCCCAGGAAACTAAGACTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTTGTCATTGCTGACATGTTGATGCCCAGGAAACTAAGACTCAGG  400

seq1  GACATTATATAATTTTCCTAGAGTTATAAATATAGTACATTGGTTTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATATAATTTTCCTAGAGTTATAAATATAGTACATTGGTTTATCT  450

seq1  CCAAACTCAAGTTTCTCTGCGTACAATGCTCTCTTCCATTTAATAAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTCAAGTTTCTCTGCGTACAATGCTCTCTTCCATTTAATAAGCTG  500

seq1  TCTGCCCTGCCATCAGAAATAGTGTTATAGAATAAGAAGTTGCCAGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTGCCATCAGAAATAGTGTTATAGAATAAGAAGTTGCCAGACAT  550

seq1  GGTGGCATGTGCCTGTAAACCTATCACTCAAGAGAATGCAGAAAGCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCATGTGCCTGTAAACCTATCACTCAAGAGAATGCAGAAAGCATGC  600

seq1  AAATTTGGTGTCAGCTTAAGCCACATAATAAAATTCTATCTGAAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGTGTCAGCTTAAGCCACATAATAAAATTCTATCTGAAAATAAA  650

seq1  AACTAATTAGACAGTAATTAAAAAGTTGGTTCATTAATTTCAAATTTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTAGACAGTAATTAAAAAGTTGGTTCATTAATTTCAAATTTTAC  700

seq1  CACAATGCCTACAAATAGGACACATGACTCTAAACTTTATCCATAAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCCTACAAATAGGACACATGACTCTAAACTTTATCCATAAACCA  750

seq1  GTAAAATGGAAGCAAATGGTAATATCAAATGCTAATACACAATTTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGGAAGCAAATGGTAATATCAAATGCTAATACACAATTTTAAAA  800

seq1  TGCTTCTCAAGGAGTTTTGTTAAAAATAAAAAAACATGCATACTTTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCAAGGAGTTTTGTTAAAAATAAAAAAACATGCATACTTTCTGT  850

seq1  TAATGCATAGTGATATAAAAATAAGCTGTATTTAATAGTATGAATGTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATAGTGATATAAAAATAAGCTGTATTTAATAGTATGAATGTGCC  900

seq1  ATTATCTCTTATTAGTTATCTTCAAGAGTTTTTCCC-TGCATTCTAAACT  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTATCTCTTATTAGTTATCTTCAAGAGTTTTTCCCTTGCATTCTAAACT  950

seq1  GTAATTTCCATGACTGAATAAATTTTGCAAAACCTATT-AACTACCTG-A  997
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  GTAATTTCCATGACTGAATAAATTTTGCAAAACCTATTAAACTACCTGAA  1000

seq1  TACGGAAATAAACTATCTGTGATGTAAATACACTAGGCTTTTGCTAGATG  1047
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TACGAAAATAAACTATCTGTGATGTAAATACACTA-GCTTTTGCTAGATG  1049

seq1  GTGCTGC-AACATACTTTTGAAAAGCTCTTTTGACT-GTGTTTTTCTAAT  1095
      ||||||| ||||||||||   ||||||||||||||| |||||||||||||
seq2  GTGCTGCAAACATACTTT--GAAAGCTCTTTTGACTGGTGTTTTTCTAAT  1097

seq1  AGAA  1099
      ||||
seq2  AGAA  1101


seq1: chr6_14566543_14567633
seq2: B6Ng01-316J24.g_65_1156 (reverse)

seq1  AAAATCCAATTCTTGTTCATTC-AAAAGATGAACATGAACAATTACAATC  49
      |||||||||| ||   |||||| |||||||| ||||| ||||||||||||
seq2  AAAATCCAATCCT--GTCATTCAAAAAGATGGACATG-ACAATTACAATC  47

seq1  TTCAGGATGTTTTCCAATTAATGAAAAGGAAAGTTGGTGGATACTTAAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATGTTTTCCAATTAATGAAAAGGAAAGTTGGTGGATACTTAAAA  97

seq1  ATGGATGAGTGACTTTATA-TTTTAATTGTGTCATGATTT-GCCAGTGTT  147
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  ATGGATGAGTGACTTTATATTTTTAATTGTGTCATGATTTGGCCAGTGTT  147

seq1  CCAAAAGTAAAATTTATTAGCTATCTGAATATGTTCTTTTCC-TTTTTTT  196
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCAAAAGTAAAATTTATTAGCTATCTGAATATGTTCTTTTCCTTTTTTTT  197

seq1  CGTGCTAGTTTCTTTGGCATAAATCATAAGCTGTGGTTTGTTTGGATCTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTAGTTTCTTTGGCATAAATCATAAGCTGTGGTTTGTTTGGATCTT  247

seq1  ATTATGCATTTGTACCCCGTCTTTCAACACTCTTGATACACATAGTCCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCATTTGTACCCCGTCTTTCAACACTCTTGATACACATAGTCCAT  297

seq1  TTAGACCGCTGAATAAGCAGGTTGTGAGAAAGAGAGAGAGAAAGAAAGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCGCTGAATAAGCAGGTTGTGAGAAAGAGAGAGAGAAAGAAAGCA  347

seq1  ATATAAAATTCTTTCCAGTCCAAGAAGCTTGTTTCCCAAGCAATATTTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATTCTTTCCAGTCCAAGAAGCTTGTTTCCCAAGCAATATTTTC  397

seq1  AGCTTCCTTAAAGATGTTTTCATTCATCACTTTTGATGAAAAACCCATAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTTAAAGATGTTTTCATTCATCACTTTTGATGAAAAACCCATAT  447

seq1  GTCCCCATGGCTCATATAGTAGAAGCTATAACCATGTACATCTGGGCAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATGGCTCATATAGTAGAAGCTATAACCATGTACATCTGGGCAGC  497

seq1  ATGAAGAATGCTGAGTCTGAGCTGGCAGCCAAATTATGCTACCTTAATCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAATGCTGAGTCTGAGCTGGCAGCCAAATTATGCTACCTTAATCT  547

seq1  TCTATGCCTAGATCAGGGGGAAATGGTAAAACATAAAATAAATAATATGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCCTAGATCAGGGGGAAATGGTAAAACATAAAATAAATAATATGG  597

seq1  TCTAAAGGCATTAATGGCCCCATTTCACAGAATTTTGGGTATCACTTTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGGCATTAATGGCCCCATTTCACAGAATTTTGGGTATCACTTTTG  647

seq1  AATCATATTACAATTTTTGAGCTACTAATTAAGAAGCTAATATATGAAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATTACAATTTTTGAGCTACTAATTAAGAAGCTAATATATGAAAC  697

seq1  ATTTTTCTTCATTATAAGCCCCCCCTTTCCCCATGATTCGATTTTCACTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTCATTATAAGCCCCCCCTTTCCCCATGATTCGATTTTCACTT  747

seq1  AAGTAGTGAAAGGGAGTAACATACATAGAACCTGTGTGAAACGTAAGTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTGAAAGGGAGTAACATACATAGAACCTGTGTGAAACGTAAGTAT  797

seq1  GTTTTGAATTTCTTTTTCACAATTTGTGGCTCTACTGTTCTCACCTTTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAATTTCTTTTTCACAATTTGTGGCTCTACTGTTCTCACCTTTTC  847

seq1  TGGCCCTACCCTTTGGCTTGTTCCCTAAGTCTAAATTTTTATGATAATGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTACCCTTTGGCTTGTTCCCTAAGTCTAAATTTTTATGATAATGA  897

seq1  TTATTGATAACATATTCATCATAGTGTGTATTAGTTGTAGCTTTAAAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATAACATATTCATCATAGTGTGTATTAGTTGTAGCTTTAAAAAT  947

seq1  ACATTATTATAGATTACTTAAATAAAGCAGCCTATAAGCTAGGAAAACAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTATAGATTACTTAAATAAAGCAGCCTATAAGCTAGGAAAACAG  997

seq1  AAGTTATTCCTCTTTCTAAATAAATTCTGGCTATCAAATTCAACCATTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTCCTCTTTCTAAATAAATTCTGGCTATCAAATTCAACCATTAG  1047

seq1  AGTCAAGTTTCTCTCCTTATCTGTGGTTGGATCATGAATGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGTTTCTCTCCTTATCTGTGGTTGGATCATGAATGAATTC  1092


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