BAC Information

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BAC

Clone NameB6Ng01-317B07
Chromosome6 (Build37)
Map Location 61,903,596 - 62,057,865
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneMmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream geneGA_x5J8B7W6GG0-4757855-4757501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317B07.bB6Ng01-317B07.g
ACCGA107314GA107315
length1,1381,182
definitionB6Ng01-317B07.b B6Ng01-317B07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,903,596 - 61,904,380)(62,056,669 - 62,057,865)
sequence
gaattctaaacccttgatcttggtcaaggatgcccttggactgttggaac
actggctttagccatgtcagagcacttataggaaaatactgaaagagagc
acgtggatccatactctagactagcttggtaatggaacttgggaatgaaa
aattaatgtatgggtagagaacactagactccaggaggagagcttccttg
aaactcttttgcctcatgagtgacttttaagcctttcggcttgtccagtt
gactcgaccagagagcatagcacacacatacatgtacacacacatgctta
atatgcttccaaacaataaaggcaaatttagtttagtttgtagaaggaaa
agtccatgtttgaaagtgatatctaatttgagtgtcagacaaagtaacaa
atcagagaaatattgatagaatgagtccaaaatagaatgcacccaactct
cagaaaagtagaaaggaacaagaagctatttaagagcagtacagagtcag
gaataaggggcagttcagtaagtgtagttcagctgagttcaggcaatgga
gtagagtgcaggtaagtgctgtttaattgaatgtacttgagttgatttga
ggtcttgctgttccattcagttctattcagttcatgcagtcagtacagtg
ctgtttgtggaattcagaggcagtttttctaagtagagccattcaatgat
tagtcaaaagagtgtgaatcagtaatcttggagtggagttttgagccata
aaaggtgagctgaaccagccagccagaactcagaaagaactagaagggtg
aactttttccagcagtacgtctctgagacaatcaattatatctggtgaat
aaaagttacgtttacatttcacaaaataatcattttactagatgtattga
agatgcaaatttataactcaagttatgtatcattcataatcttatcagaa
tactctgacttgataaattattagcttatagaaaaatatgatttttctat
tctgttaaattatttagagaatgcaaaacatgtatttgtaatatacttta
tatctgcatatacattttgctgcctaatttttagatatttacacacttgc
atatctgctgcatgcatatttgaaaaatatgtgggtac

gaattctcatttaaccagaacctaaaattaaactatatatatttccatat
taagctttttattttgtgaaagtaggaaattattaaaatcaaaagaaaca
tgttcataaccagtacatttctatttttgattttccaagacatagtgact
ccagcttcctggtgtctaggactggaccctattgatgcagtggcctccaa
tctctgtgtgcaacttaaatgaagagtggagatttgctccttcttaagaa
agtgaatctgaatcaaaatatgaagcacattctggaatatcttgccttag
gtttgaatttatcaattaatctgaaataataactaagtaaataaaatctt
atttccaataaatgttagagaattcaatcacagatcaataaaaagaaaaa
cagcaaaagaatttattatctgttagggccattaaatttctgtaaatttt
aatcttcctaagtcattcatattagcagttctttttgactttaactttgt
tcattaaaaattcaaatatccaaaattaattcatgagaaggaaataatat
atgtactgcttcctttgttgtttgggacactgtacagaaagcacaatgtg
cactggttttgttattcattcatgggtcttcctcctaaatgtcatcaaat
gacttttttttttctgaaaataatgaacatgagcactgtgcacactagat
tgcgcctttcagtaacccaagcatcacattaagaagaatccattggcagt
catagttagatacaatttgattcatgaagactttttgctcaagcagttgg
caatggaggcacataaccaagtcaatggatagaagctgtgtagtggcatg
gatgtgatgggagatgagaaaagctgttcctcaaagtctgctggcacagg
tgatatttacaggtccatttctcggtggcacattaatgtagacaagctgc
tagagactccaggactgcaggcaggtttatgacacagcagcagagtaaag
ctgtaaaaatctggggtttctagctaaattttattcattatttatgatct
atatgcgatgactagaaataaagcaaacattagagagtcacgtgctttaa
tcatagaaagaacagaatgttctttaggatcttactagagtctcagcctg
tacaaaccatatcagttgtttatacaaaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_61903596_61904380
seq2: B6Ng01-317B07.b_413_1182

seq1  ATATCTAATTTGAGTGTCAGACAAAGTAACAAATCAGAGAAATATTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAATTTGAGTGTCAGACAAAGTAACAAATCAGAGAAATATTGATA  50

seq1  GAATGAGTCCAAAATAGAATGCACCCAACTCTCAGAAAAGTAGAAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTCCAAAATAGAATGCACCCAACTCTCAGAAAAGTAGAAAGGAA  100

seq1  CAAGAAGCTATTTAAGAGCAGTACAGAGTCAGGAATAAGGGGCAGTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCTATTTAAGAGCAGTACAGAGTCAGGAATAAGGGGCAGTTCAG  150

seq1  TAAGTGTAGTTCAGCTGAGTTCAGGCAATGGAGTAGAGTGCAGGTAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTAGTTCAGCTGAGTTCAGGCAATGGAGTAGAGTGCAGGTAAGTG  200

seq1  CTGTTTAATTGAATGTACTTGAGTTGATTTGAGGTCTTGCTGTTCCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAATTGAATGTACTTGAGTTGATTTGAGGTCTTGCTGTTCCATTC  250

seq1  AGTTCTATTCAGTTCATGCAGTCAGTACAGTGCTGTTTGTGGAATTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATTCAGTTCATGCAGTCAGTACAGTGCTGTTTGTGGAATTCAGA  300

seq1  GGCAGTTTTTCTAAGTAGAGCCATTCAATGATTAGTCAAAAGAGTGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTTTTCTAAGTAGAGCCATTCAATGATTAGTCAAAAGAGTGTGAA  350

seq1  TCAGTAATCTTGGAGTGGAGTTTTGAGCCATAAAAGGTGAGCTGAACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATCTTGGAGTGGAGTTTTGAGCCATAAAAGGTGAGCTGAACCAG  400

seq1  CCAGCCAGAACTCAGAAAGAACTAGAAGGGTGAACTTTTTCCAGCAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGAACTCAGAAAGAACTAGAAGGGTGAACTTTTTCCAGCAGTAC  450

seq1  GTCTCTGAGACAATCAATTATATCTGGTGAATAAAAGTTACGTTTACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAGACAATCAATTATATCTGGTGAATAAAAGTTACGTTTACATT  500

seq1  TCACAAAATAATCATTTTACTAGATGTATTGAAGATGCAAATTTATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAATAATCATTTTACTAGATGTATTGAAGATGCAAATTTATAACT  550

seq1  CAAGTTATGTATCATTCATAATCTTATCAGAAATACTCTGACTTGAATAA  600
      |||||||||||||||||||||||||||||| |||||||||||||||   |
seq2  CAAGTTATGTATCATTCATAATCTTATCAG-AATACTCTGACTTGA--TA  597

seq1  AATTATTAGCTTAATAAGAAAAAATATGA-TTTTCTATTCTGTTAAATTA  649
      |||||||||||| |||   |||||||||| ||||||||||||||||||||
seq2  AATTATTAGCTT-ATA--GAAAAATATGATTTTTCTATTCTGTTAAATTA  644

seq1  TTTAGAGAAATGCAAAACATGTTAATTTTGTTAATATACTTTATATCTGC  699
      ||||||| ||||||||||||||  ||||   |||||||||||||||||||
seq2  TTTAGAG-AATGCAAAACATGT--ATTT--GTAATATACTTTATATCTGC  689

seq1  ATATACATTTTGCTTGCTTTATTTTTTAGTTTATTTTACACACTTGTATA  749
      ||||||||||||||  |  || ||||||| |   |||||||||||| |||
seq2  ATATACATTTTGCTGCC--TAATTTTTAGAT--ATTTACACACTTGCATA  735

seq1  TCTTGGTTGCATGCATATTTG-AATATATGTGGGTAC  785
      |||  | |||||||||||||| || ||||||||||||
seq2  TCT--GCTGCATGCATATTTGAAAAATATGTGGGTAC  770


seq1: chr6_62056669_62057865
seq2: B6Ng01-317B07.g_66_1247 (reverse)

seq1  AGTTTTTGTAT-AACAA-TGAT-TGTTTTGTCCAAGCTTGAAAGACCCTT  47
      ||||||||||| ||||| |||| || ||||| || |||    ||||    
seq2  AGTTTTTGTATAAACAACTGATATGGTTTGTACAGGCT---GAGAC----  43

seq1  CCTAGTAAGATTACTAAAAGACA-TCTG-TCCTTCTATGAATTTAAAGCA  95
       ||||||||| | |||||  ||| |||| || ||||||||  ||||||| 
seq2  TCTAGTAAGA-TCCTAAAGAACATTCTGTTCTTTCTATGA--TTAAAGC-  89

seq1  ACGTGACTCTCTAAATGTTTTGCTTTATTTCTAAGTCATCGCATATAGAT  145
      |||||||||||| |||| |||||||||||||| |||||||||||||||||
seq2  ACGTGACTCTCT-AATG-TTTGCTTTATTTCT-AGTCATCGCATATAGAT  136

seq1  CATTAAAATTAATGAATAAAATTTTAGCTAGAAACCCCAGATTTTTTACA  195
      |||   || |||||||||||| ||||||||||||||||||| ||||||||
seq2  CAT---AAATAATGAATAAAA-TTTAGCTAGAAACCCCAGA-TTTTTACA  181

seq1  GCTTTACTCTGCTGCTGTTGTCATAAACCTGCCTGCAGTCCTGGAGTCTC  245
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTTTACTCTGCTGCTG-TGTCATAAACCTGCCTGCAGTCCTGGAGTCTC  230

seq1  TAGCAGCTTGTCTACATTAATGTGCCACCGAGAAATGGACCTGTAAATAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCTTGTCTACATTAATGTGCCACCGAGAAATGGACCTGTAAATAT  280

seq1  CACCTGTGCCAGCAGACTTTGAGGAACAGCTTTTCTCATCTCCCATCACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGCCAGCAGACTTTGAGGAACAGCTTTTCTCATCTCCCATCACA  330

seq1  TCCATGCCACTACACAGCTTCTATCCATTGACTTGGTTATGTGCCTCCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCACTACACAGCTTCTATCCATTGACTTGGTTATGTGCCTCCAT  380

seq1  TGCCAACTGCTTGAGCAAAAAGTCTTCATGAATCAAATTGTATCTAACTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACTGCTTGAGCAAAAAGTCTTCATGAATCAAATTGTATCTAACTA  430

seq1  TGACTGCCAATGGATTCTTCTTAATGTGATGCTTGGGTTACTGAAAGGCG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCCAATGGATTCTTCTTAATGTGATGCTTGGGTTACTGAAAGGCG  480

seq1  CAATCTAGTGTGCACAGTGCTCATGTTCATTATTTTCAGAAAAAAAAAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAGTGTGCACAGTGCTCATGTTCATTATTTTCAGAAAAAAAAAAG  530

seq1  TCATTTGATGACATTTAGGAGGAAGACCCATGAATGAATAACAAAACCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGATGACATTTAGGAGGAAGACCCATGAATGAATAACAAAACCAG  580

seq1  TGCACATTGTGCTTTCTGTACAGTGTCCCAAACAACAAAGGAAGCAGTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTGTGCTTTCTGTACAGTGTCCCAAACAACAAAGGAAGCAGTAC  630

seq1  ATATATTATTTCCTTCTCATGAATTAATTTTGGATATTTGAATTTTTAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATTTCCTTCTCATGAATTAATTTTGGATATTTGAATTTTTAAT  680

seq1  GAACAAAGTTAAAGTCAAAAAGAACTGCTAATATGAATGACTTAGGAAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGTTAAAGTCAAAAAGAACTGCTAATATGAATGACTTAGGAAGA  730

seq1  TTAAAATTTACAGAAATTTAATGGCCCTAACAGATAATAAATTCTTTTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTACAGAAATTTAATGGCCCTAACAGATAATAAATTCTTTTGC  780

seq1  TGTTTTTCTTTTTATTGATCTGTGATTGAATTCTCTAACATTTATTGGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTTTTATTGATCTGTGATTGAATTCTCTAACATTTATTGGAA  830

seq1  ATAAGATTTTATTTACTTAGTTATTATTTCAGATTAATTGATAAATTCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTTTATTTACTTAGTTATTATTTCAGATTAATTGATAAATTCAA  880

seq1  ACCTAAGGCAAGATATTCCAGAATGTGCTTCATATTTTGATTCAGATTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGGCAAGATATTCCAGAATGTGCTTCATATTTTGATTCAGATTCA  930

seq1  CTTTCTTAAGAAGGAGCAAATCTCCACTCTTCATTTAAGTTGCACACAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAAGAAGGAGCAAATCTCCACTCTTCATTTAAGTTGCACACAGA  980

seq1  GATTGGAGGCCACTGCATCAATAGGGTCCAGTCCTAGACACCAGGAAGCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAGGCCACTGCATCAATAGGGTCCAGTCCTAGACACCAGGAAGCT  1030

seq1  GGAGTCACTATGTCTTGGAAAATCAAAAATAGAAATGTACTGGTTATGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCACTATGTCTTGGAAAATCAAAAATAGAAATGTACTGGTTATGAA  1080

seq1  CATGTTTCTTTTGATTTTAATAATTTCCTACTTTCACAAAATAAAAAGCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCTTTTGATTTTAATAATTTCCTACTTTCACAAAATAAAAAGCT  1130

seq1  TAATATGGAAATATATATAGTTTAATTTTAGGTTCTGGTTAAATGAGAAT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGGAAATATATATAGTTTAATTTTAGGTTCTGGTTAAATGAGAAT  1180

seq1  TC  1197
      ||
seq2  TC  1182


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