BAC Information

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BAC

Clone NameB6Ng01-317H02
Chromosome6 (Build37)
Map Location 85,341,318 - 85,341,807
singlet/doubletsinglet
Overlap genenone
Upstream gene4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5
Downstream geneNoto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317H02.bB6Ng01-317H02.g
ACCGA107585GA107586
length4851,177
definitionB6Ng01-317H02.b B6Ng01-317H02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
actatgtagaccaggctggccctgtgcactaccacactcagtttcacctt
gaatctgagaccctcctgccctagcccgccacatgttgagattgtgcatg
tgtgacactgatatgtagctttcgaaagtttataatttcttttcttgaga
caaaatttcatgtaacccaggctgggtaataatgaccttaaactcctgat
cgtcctgcttcctcctccaagttctgggagtatggacgatggatggagtg
agcatctccaaggccagctgctgctgctgctgctgctccttttttttttt
ttttttttttttttttggtttttcgagacagggtttctctgtgtagccct
ggctgtcctggaacgcactctgtagaccaggctggcctcgaactcagaaa
tctgcctgcctctgcctcccagaatgctgggattaaaggcgtgcgccacc
accgccgggctcctcctcctcctcctccacctcca
gaattcaacagggcaggaacctggaggcaggagctgaggcagaggccgtg
ggaaaatgctgctttctggcttgttccccatgtatttctcagcctgcttt
ttagagcacccagggccaccagctcagggatggcaccatgtaccatgcgc
tgtgccctccctcatcaatcactaattaagaaaatgacttgcaggtctat
tgttggagatgccactgttggtggactgttacctggaagtgtaagcttaa
taaaccctttcctcctcaacttgcttttggttatggtgtttcatcacagc
aatagaaaccctaactaagacattgctcaggactttggttttacaaggta
accagatcttagagagacattttcttaattgaagttcctcttttagatga
tcccagcctatgtcaagttgacataaaactgtccaacataagcaagaaaa
acagaaattggagaattgaagaaatcccacttgctgattttaaatagatc
acaaaataggagtagagcgacatctcactcagtaaagagcctgccacaca
agcatgaggacctgagtgcagatccccagaacccacacacacacaaaaac
ccagatatgatttgcacctccaggaaagggaaaatggatccctggggctc
tctgaccgaagagtctagccaaacagtgagcactgggttcactgagagac
actgtctaaaaagataatgaggagagtgtcttggttagggttttactgct
gccaacagacaccatgaccaaggcaactcttataaagacaacatttaatt
gaggctggctgacaggttcagaggttcagaccattatcatcaaggtagaa
gcatggcagcatccaggcaggcatggtgcagaggagctgagagttaaata
tcttgttccaaaggtaaacaggagaagactgacttccaagcagctaggac
taggtcttaaagcccatgcccacagtaacacgcctactcaacaagccaca
ctcccatagcgccactccctgagcaagcattatcaaactatcacagaaag
taatgaggagacagtctgtggactctggacttgcatgtgtatgcacttgc
caatacttatagccttgaacaacatgcccatacacactatggtcatcttt
acacaccttgacaaaattcagccgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85341318_85341807
seq2: B6Ng01-317H02.b_46_535

seq1  GAATTCACTATGTAGACCAGGCTGGCCCTGTGCACTACCACACTCAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCAGGCTGGCCCTGTGCACTACCACACTCAGTTT  50

seq1  CACCTTGAATCTGAGACCCTCCTGCCCTAGCCCGCCACATGTTGAGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGAATCTGAGACCCTCCTGCCCTAGCCCGCCACATGTTGAGATTG  100

seq1  TGCATGTGTGACACTGATATGTAGCTTTCGAAAGTTTATAATTTCTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTGACACTGATATGTAGCTTTCGAAAGTTTATAATTTCTTTTC  150

seq1  TTGAGACAAAATTTCATGTAACCCAGGCTGGGTAATAATGACCTTAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAAAATTTCATGTAACCCAGGCTGGGTAATAATGACCTTAAACT  200

seq1  CCTGATCGTCCTGCTTCCTCCTCCAAGTTCTGGGAGTATGGACGATGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCGTCCTGCTTCCTCCTCCAAGTTCTGGGAGTATGGACGATGGAT  250

seq1  GGAGTGAGCATCTCCAAGGCCAGCTGCTGCTGCTGCTGCTGCTCCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGCATCTCCAAGGCCAGCTGCTGCTGCTGCTGCTGCTCCTTTTT  300

seq1  TTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGT  350

seq1  AGCCCTGGCTGTCCTGGAACGCACTCTGTAGACCAGGCTGGCCTCGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACGCACTCTGTAGACCAGGCTGGCCTCGAACT  400

seq1  CAGAAATCTGCCTGCCTCTGCCTCCCAGAGTGCTGGGATTAAAGGCGTGC  450
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGAAATCTGCCTGCCTCTGCCTCCCAGAATGCTGGGATTAAAGGCGTGC  450

seq1  GCCACCACCGCCGGGCTCCTCCTCCTCCTCCTCCTCCTCC  490
      |||||||||||||||||||||||||||||||||| |||||
seq2  GCCACCACCGCCGGGCTCCTCCTCCTCCTCCTCCACCTCC  490