BAC Information

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BAC

Clone NameB6Ng01-317P04
Chromosome6 (Build37)
Map Location 85,607,806 - 85,608,370
singlet/doubletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317P04.bB6Ng01-317P04.g
ACCGA107962GA107963
length9761,128
definitionB6Ng01-317P04.b B6Ng01-317P04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttaggcttcttgtatgttaatgggtatctctttgtttatgttt
ggggggttttcttctataattttgttgaaaatatttgctgggcctttaag
ttgaaaatcctcattctcatctactcatattatccataggtttggccttc
tcattgtgacctggatttcctggatgttttgtgttaggatctttttgcac
tttgcattttctttgattgttgtgtccatgttatctatggaatcatctgc
acctgagattttctcttccatctcttgtattcttttgctgatgttcacat
ctatgtttccagatttctttccttggttttctatctccagtattgtctca
ttttgggttttctttattgtttctacttccctttttaggtcttggatggt
tttgttcaattccatcacctgtttggttgtgttttcctgtaattctttaa
gtacttttaccactttagcagtgttctcctgtatttctttaagtgagtta
ttaatgcccttcttgatgtcctctaccagaatcatgagatatgattttaa
atctgagtcttgcttttgagtgtgtcgggttatcctggactggctgaggt
gggagtgctgggttctgatgatggtgagtggccttggtttctgttagtag
gattcctttccagccatctggtaatctctggagttagtttttagagttgt
ctctggttgaagcttgttcctcctgtgattctgttagcctttgtcagcag
acctgtgagtctagctctcctgagactcagaggtcaaagtattctgtgca
ggcaagctctcctcttacagggaaggagcacagatatctgatgttcagac
ctgccttctggctgaagatgaaggccagaaacagggcctgtcccagaaga
tgtgttgcctctgcagtctgcatgctcacatgcacagactgctccctgag
ggacgcaggacacaagaagctctctc
gaattctgttcagaaagtcttttactgtgtcactgaattcaagactatta
ccacattatcgtctatagtcagtgtatcgggtttatgttaaggcctttga
ttcattagaagttgagattttgtagggtgagagtgaggatctatttgaat
tcttgtaatgcaacaatttattttaatcagcactatttgtgctgcctttt
ttcttagtgtttattacttacaatttttaagaatgaagatagcaaaaaga
aaaaaaaaaaacccaccaccatcaccaccaccaaaaaaaaaaaaaaaaaa
aaccaaacaaaaccaacaacaaaacaaaagtaaaaaagtatatattgacc
aatctctataatgaacttagatgtgaaaattcataataaaatacttgtac
actgaatctgaaatcacatcaaaacagttatccactgtcaccaagttgac
ttcctcacagagagtcaaggattgtttaaaaaacgtaaatcaataaatgt
aacccatcacataaataaaaaaacaaacaaacagaaaccacatgcttatc
taattcaatgcagaaaatacaattcccaaaatccaatggctgctaagaaa
aaaaaatgtgtattcattagttttgggttagaatgttctgtaaatatctg
ttagatacatttgatttattataatatttaagttcagagtttctcagttt
ggtttttgtctggatgttctgtctattggtgagagtggaatattaaagtt
tcttgatgttactatgttgggagtcaacctgtaatcttagaacaaatagg
tttttctaataaagtttgatggccctatgtttggcatataaacatatgga
attataaaattttcttggtagagtttttccttaatgagtatgaaatgttt
tttccctatatgtctgattaatttggcttgaatattttttcagatgtata
ctgcttattcttttcattatatggtctttccatcttcagtcaaggtgata
ttctatcatgaatgttaagttgttctagaagattagagatacaaaagtat
actttaataatcaatcctaccggttttatggcactagacgtcatatggaa
catatgcagcttatgaaacgtgtaaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85607806_85608370
seq2: B6Ng01-317P04.b_52_596 (reverse)

seq1  AAAAGCATATCTCATGATGATGGTAGAGGACATCAAGAAGGACTTAAATA  50
      |||| |||||||||||||  ||||||||||||||||||||| | | ||||
seq2  AAAATCATATCTCATGATTCTGGTAGAGGACATCAAGAAGGGCATTAATA  50

seq1  ACTCACTTAAAGATATACAGGAGAACACTGCTAAACAGGTAGAAGACATT  100
      ||||||||||||| |||||||||||||||||||||  |||| |||    |
seq2  ACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGTGGTAAAAG----T  96

seq1  AAAGAGGAAGCACAAAAATCCCTTAAAGAATTGCAGGAAAACACAACTAA  150
      |                    ||||||||||| |||||||||||||| ||
seq2  A--------------------CTTAAAGAATTACAGGAAAACACAACCAA  126

seq1  ACAGGTGATGGAATTGAATAAAACCATCCAAGACCTAAAAAGGGAAGTAG  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAGGTGATGGAATTGAACAAAACCATCCAAGACCTAAAAAGGGAAGTAG  176

seq1  ACACAAT----AAAACCCAAAGTGAGGCAACGCTGGAGATAGAAACCCTA  246
      | |||||    |||||||||| |||| |||  ||||||||||||| || |
seq2  AAACAATAAAGAAAACCCAAAATGAGACAATACTGGAGATAGAAAACCAA  226

seq1  GGAAAGAAATCTGGAAACATAGATGCGAGCATCAGCAACAGAATACAAGA  296
      ||||||||||||||||||||||||| || ||||||||| |||||||||||
seq2  GGAAAGAAATCTGGAAACATAGATGTGAACATCAGCAAAAGAATACAAGA  276

seq1  GATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCA  346
      ||||||||||| ||||||||||||||| ||||||||||| ||||| | ||
seq2  GATGGAAGAGAAAATCTCAGGTGCAGATGATTCCATAGATAACATGGACA  326

seq1  CAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATC  396
      |||||||||||||||||| ||| ||||||||||||||||| |||||||||
seq2  CAACAATCAAAGAAAATGCAAAGTGCAAAAAGATCCTAACACAAAACATC  376

seq1  CAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGT  446
      ||||||||||||| |||||||||||| ||||||||| |||||||| ||||
seq2  CAGGAAATCCAGGTCACAATGAGAAGGCCAAACCTATGGATAATATGAGT  426

seq1  GGATGAGAATGAAGATTTTTAACTCAAAGTACCGGCAAATATCTTCAACA  496
       ||||||||||| |||||| |||| ||||  || |||||||| |||||||
seq2  AGATGAGAATGAGGATTTTCAACTTAAAGGCCCAGCAAATATTTTCAACA  476

seq1  AAATTATAGAAGAAAACGTCCCAAATCTAAAGAAAGAGATGCCCATGAAC  546
      |||||||||||||||||  ||||||  |||| |||||||| ||||| |||
seq2  AAATTATAGAAGAAAACCCCCCAAACATAAACAAAGAGATACCCATTAAC  526

seq1  ATACAAGAAGCCTACAGAA  565
      |||||||||||||| ||||
seq2  ATACAAGAAGCCTAAAGAA  545