BAC Information

Click to search

BAC

Clone NameB6Ng01-318P22
Chromosome6 (Build37)
Map Location 107,277,796 - 107,278,888
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318P22.bB6Ng01-318P22.g
ACCGA108741GA108742
length1,088254
definitionB6Ng01-318P22.b B6Ng01-318P22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgacattcttaggcaagtggatggatctggaggatatcatact
gagtgaggtaacccaatcacaaaagaacccacatgttatgcactctatca
tctatctatctatctatctatctatctatctatctatctatctatctatt
tatctatctatctactgcttgtgtatgcaaattttggtgcatatgtggaa
gatagagggcaactgtgggactcacagacctcttctttcaccacatgggt
catggggactaaacttagactttatggaaaagccctctcactaggctgca
tgaacattttaacctttctaagttctgatttctttatttctgagctaaat
gagacaataaccctatccaaaagaatcattatagtcaatgagataatata
tagaaagagctcaacacatttcctgacacacaggaattgcctaagaaaga
tctgtgattattgtgtctattactatcactagcttaaaatttttggtaat
ttttttatatctcttttgtatataacaaagtcccatgtctagcactcact
ggggagttgagaagtttcagatgttattgcttatgaatcaataagaatct
caatatgatagtccagaagaggaaagtagagctatctaataaaacccttt
ctggtcacagtaaggaaacaccaaagagaaggaaaacttcctgccaaaaa
ggatgcaggggaacagaagaaacctttctactgaaagttatcctcaagat
acccctgtcactgatgaggaaagagtggtttgagggacagtttctaagtt
gtgaaaggaagcaaagggtagaagaaagttgcataaaagaggttgcaaat
ggattcttcaaagaacatcagacagatgaagaaaaaaatcatagcagaga
atattcccacaattcacagttatacaaaggagcctcacagagcaaactct
aacaacacagaaaatgagacaaagagaaaaggagcaggtaaagctcaaca
tagacaaaaaaatgtttgtaaagagctgaggcaaacatgatcaggtgttt
gtgacatttgtcattgaataaaggattggggcatcgta

attgggtagcttagtgtacttgtaggaatcctagcttagcggggcctgtc
tctgactccttcacctactcctgggacccttttcctcctgctgggttacc
ttgtccagcattggtgtgatggtttgtccctggtcttatggaactttgtc
atgctgtgtttggttgatgtccctgggaagcctgctcttttctgagggga
ggcagagagggagtggatctgatgaagagaggaggtagaggagaggctgg
gggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107277796_107278888
seq2: B6Ng01-318P22.b_49_1136

seq1  GAATTCATGACATTCTTAGGCAAGTGGATGGATCTGGAGGATATCATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACATTCTTAGGCAAGTGGATGGATCTGGAGGATATCATACT  50

seq1  GAGTGAGGTAACCCAATCACAAAAGAACCCACATGTTATGCACTCTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGTAACCCAATCACAAAAGAACCCACATGTTATGCACTCTATCA  100

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATT  150

seq1  TATCTATCTATCTACTGCTTGTGTATGCAAATTTTGGTGCATATGTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTACTGCTTGTGTATGCAAATTTTGGTGCATATGTGGAA  200

seq1  GATAGAGGGCAACTGTGGGACTCACAGACCTCTTCTTTCACCACATGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGGGCAACTGTGGGACTCACAGACCTCTTCTTTCACCACATGGGT  250

seq1  CATGGGGACTAAACTTAGACTTTATGGAAAAGCCCTCTCACTAGGCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGACTAAACTTAGACTTTATGGAAAAGCCCTCTCACTAGGCTGCA  300

seq1  TGAACATTTTAACCTTTCTAAGTTCTGATTTCTTTATTTCTGAGCTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTTAACCTTTCTAAGTTCTGATTTCTTTATTTCTGAGCTAAAT  350

seq1  GAGACAATAACCCTATCCAAAAGAATCATTATAGTCAATGAGATAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATAACCCTATCCAAAAGAATCATTATAGTCAATGAGATAATATA  400

seq1  TAGAAAGAGCTCAACACATTTCCTGACACACAGGAATTGCCTAAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAGCTCAACACATTTCCTGACACACAGGAATTGCCTAAGAAAGA  450

seq1  TCTGTGATTATTGTGTCTATTACTATCACTAGCTTAAAATTTTTGGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATTATTGTGTCTATTACTATCACTAGCTTAAAATTTTTGGTAAT  500

seq1  TTTTTTATATCTCTTTTGTATATAACAAAGTCCCATGTCTAGCACTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATATCTCTTTTGTATATAACAAAGTCCCATGTCTAGCACTCACT  550

seq1  GGGGAGTTGAGAAGTTTCAGATGTTATTGCTTATGAATCAATAAGAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTTGAGAAGTTTCAGATGTTATTGCTTATGAATCAATAAGAATCT  600

seq1  CAATATGATAGTCCAGAAGAGGAAAGTAGAGCTATCTAATAAAACCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGATAGTCCAGAAGAGGAAAGTAGAGCTATCTAATAAAACCCTTT  650

seq1  CTGGTCACAGTAAGGAAACACCAAAGAGAAGGAAAACTTCCTGCCAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACAGTAAGGAAACACCAAAGAGAAGGAAAACTTCCTGCCAAAAA  700

seq1  GGATGCAGGGGAACAGAAGAAACCTTTCTACTGAAGGTTATCCTCAAGAT  750
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGATGCAGGGGAACAGAAGAAACCTTTCTACTGAAAGTTATCCTCAAGAT  750

seq1  ACCCCTGTCACTGATGAGGAAAGAGTGGTTTGAGGGACAGTTTCTAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGTCACTGATGAGGAAAGAGTGGTTTGAGGGACAGTTTCTAAGTT  800

seq1  GTG-AAGGAAGCAAAGGGTAGAAGAAAGTTGCATAAAAGAGGTTGCAAAT  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGAAGCAAAGGGTAGAAGAAAGTTGCATAAAAGAGGTTGCAAAT  850

seq1  GGATTCTTCAAAGAACATCAGGACAGATGAAGAAAAAAATCATAGCAGAG  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGATTCTTCAAAGAACATCA-GACAGATGAAGAAAAAAATCATAGCAGAG  899

seq1  AATATTCCCACAATTCACAGTTATACAAAGGAGCCTCACAGAGCAAACTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCCACAATTCACAGTTATACAAAGGAGCCTCACAGAGCAAACTC  949

seq1  TAACAACACAGAAAAATGAGACAAAGAGAAAAGGAGCCAAGTAAAAGCTC  999
      ||||||||||| |||||||||||||||||||||||||  ||  |||||||
seq2  TAACAACACAG-AAAATGAGACAAAGAGAAAAGGAGC--AGGTAAAGCTC  996

seq1  AACATAGAC-AAAAAATGTTTGTAAAGAGCTGGAGGGCAAACAATGGTCA  1048
      ||||||||| ||||||||||||||||||||||   ||||||| ||| |||
seq2  AACATAGACAAAAAAATGTTTGTAAAGAGCTG--AGGCAAAC-ATGATCA  1043

seq1  GGTGTTTGTGACATTTGTCATTGAAATAAAAGA-TGGGGCATCGTA  1093
      ||||||||||||||||||||||| |||||| || ||||||||||||
seq2  GGTGTTTGTGACATTTGTCATTG-AATAAAGGATTGGGGCATCGTA  1088


| Home | SequenceCutter | Blast | Download |