BAC Information

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BAC

Clone NameB6Ng01-322M07
Chromosome6 (Build37)
Map Location 123,396,566 - 123,397,742
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436
Downstream geneEG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322M07.bB6Ng01-322M07.g
ACCGA111526GA111527
length1,1831,166
definitionB6Ng01-322M07.b B6Ng01-322M07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtaagaatgttacctactcagtaacattcaaatttacttctgg
tagagacagtgaaactaattaggcattacaatttacttgtatagagctag
aaaagctcagggctagtctacatagtaattacttcatgaaagggttagta
gaatggaattagtagatgtgttagtagaatgtaatggaattcctctggtg
caggtttttctctaggcccagacgaatagcataatcaggtatttactaaa
ggacccctggtgttgggtttaacaatagactagcatagtatcagagcatt
cacctggctcctgtgtttagctgatcttaattaagggttgttcctattct
cagttgtaaacactggcctggctcctgctatctttttacatatgcgtttt
ctttgttttgtgttaagaaccagtgtaccttgatggatgtattcgcctag
ctttcttatttttcttctgtattataagactggggcttgctttgagaaaa
atacattcagatacacccttgtgtctgtatttgtttgacattcttgccaa
cgcttgctcacctgtaaccaaaaccccgtttcctgcagattgaaaaccca
attgaggtttgtctgcagcactcagccatttgagattcctctactgagaa
ttttttgtttagctatgtacctcattttaaaatttagattgcttagtttt
ttgttgcctagtgttttcagttctttatatatattggatattatctctct
gtcagatgtagagttcgtataaatcatatctcattatgtagacttttgaa
gttgttctttgacttagagaagatttttggtttcatgaagtcccacttat
tattgttgatgtaagtgcctacactatcagtgttctgtttaggaaattgt
cttctgtgtcaatgtgtttaaagctgttctctactttttcttcttcaaag
ccagtgtgtctgggtttaatgtgattgttaattggccttgaattttgtgt
agggtgatataggatttatttgcaattattcacatcctgaaactatccaa
ttggaatagcaccattgtgtgaaggagatctttcttttccatttgtgttc
tgacttttcatcagaacatggtcataccttgttggaatattccgggcttc
ataatccctctctcaccggtgaagttctaatgc
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctcagcaggctcccctcaaaattagaaactaatttctggaaata
ccaggtcatatttttccaaacacttttagtaggaatgaatacagaattct
aagagactcgaatgctaaagatatacgtagagacaatcatatcgtctctc
tcacactatcaaataaaacataaaataaaatttaagagaagataagcatt
gaataatatttgttgttacattatgtgatgtatctaacagaggccaaagg
ggaaaaaatttccaaggatgaagccagagaacagccaaggaagagaaaac
attaatctagatattggagaagcctagaaaatcctacatgggatgaaaaa
actaaaatattttttatcattgttgaaccagagaatttcccaaaaaagta
taaactacaatctgattatgtacaatgtcaatgtaagttaaaataaaaag
agatactatttcataatttcaatatgataaaatttaagactatcaaagat
tacacagcttgtacagattgcatattttagataggaactatgcttgaggc
accaattatcaaatataatttagaaaaataatttagacggtcctgaccaa
aaaacatttttgctaaaataatgcttataaattgaaattctagataattt
gtatgatatataccagtaaattaatgtagaaatagagaaatgggggtggg
ctttaaagagaaaaaagaaagaaaaaggagagaaactttacttcaatagg
gaaatgataaacttccaaattatacatgaagattaacaataatttatata
gaggattgggttttaaccatagaaaagctggaaattagtttaatttacac
tactgcataacctcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_123396566_123397742
seq2: B6Ng01-322M07.g_69_1234 (reverse)

seq1  AGGAGTTTATGCAAGTAGTGGTATAATTAAACTATATTCAGGCTTTTCTA  50
      ||||| |||||| |||||| ||| ||||||||||  |||  |||||||||
seq2  AGGAGGTTATGC-AGTAGT-GTA-AATTAAACTAATTTCCAGCTTTTCTA  47

seq1  TGGTTTAAAACCAAATCCCTCTATATAAAATTATGTTAATCTTCATGGTA  100
      ||| |||||||| ||| |||||||||||| |  ||||||||||||| |||
seq2  TGG-TTAAAACCCAAT-CCTCTATATAAATTATTGTTAATCTTCAT-GTA  94

seq1  TAATTTGGAAGTTTTATCATTTTCCTATTGGAAGTAAAGTTTCTTCTCCT  150
      ||||||||||| |||||||||| |||||| ||||||||||||| ||||||
seq2  TAATTTGGAAG-TTTATCATTTCCCTATT-GAAGTAAAGTTTC-TCTCCT  141

seq1  TTTTCTTTCTTTTTTCTCTTTTAAAGCCCA-CCCCATTTCTTCTATTTCT  199
      |||||||||||||||||| ||||||||||| ||||||||| |||||||||
seq2  TTTTCTTTCTTTTTTCTC-TTTAAAGCCCACCCCCATTTC-TCTATTTCT  189

seq1  ACATTAATTTACTGGTATATATTCATACAAATTATCTAGAATTTCAATTT  249
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACATTAATTTACTGGTATATA-TCATACAAATTATCTAGAATTTCAATTT  238

seq1  ATAAGCATTATTTTAGCAAAAATGTTTTTTGGTCAGGACCGTCTAAATTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATTATTTTAGCAAAAATGTTTTTTGGTCAGGACCGTCTAAATTA  288

seq1  TTTTTCTAAATTATATTTGATAATTGGTGCCTCAAGCATAGTTCCTATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAAATTATATTTGATAATTGGTGCCTCAAGCATAGTTCCTATCT  338

seq1  AAAATATGCAATCTGTACAAGCTGTGTAATCTTTGATAGTCTTAAATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGCAATCTGTACAAGCTGTGTAATCTTTGATAGTCTTAAATTTT  388

seq1  ATCATATTGAAATTATGAAATAGTATCTCTTTTTATTTTAACTTACATTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTGAAATTATGAAATAGTATCTCTTTTTATTTTAACTTACATTG  438

seq1  ACATTGTACATAATCAGATTGTAGTTTATACTTTTTTGGGAAATTCTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTACATAATCAGATTGTAGTTTATACTTTTTTGGGAAATTCTCTG  488

seq1  GTTCAACAATGATAAAAAATATTTTAGTTTTTTCATCCCATGTAGGATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACAATGATAAAAAATATTTTAGTTTTTTCATCCCATGTAGGATTT  538

seq1  TCTAGGCTTCTCCAATATCTAGATTAATGTTTTCTCTTCCTTGGCTGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTTCTCCAATATCTAGATTAATGTTTTCTCTTCCTTGGCTGTTC  588

seq1  TCTGGCTTCATCCTTGGAAATTTTTTCCCCTTTGGCCTCTGTTAGATACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTCATCCTTGGAAATTTTTTCCCCTTTGGCCTCTGTTAGATACA  638

seq1  TCACATAATGTAACAACAAATATTATTCAATGCTTATCTTCTCTTAAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAATGTAACAACAAATATTATTCAATGCTTATCTTCTCTTAAATT  688

seq1  TTATTTTATGTTTTATTTGATAGTGTGAGAGAGACGATATGATTGTCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATGTTTTATTTGATAGTGTGAGAGAGACGATATGATTGTCTCT  738

seq1  ACGTATATCTTTAGCATTCGAGTCTCTTAGAATTCTGTATTCATTCCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATATCTTTAGCATTCGAGTCTCTTAGAATTCTGTATTCATTCCTAC  788

seq1  TAAAAGTGTTTGGAAAAATATGACCTGGTATTTCCAGAAATTAGTTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGTTTGGAAAAATATGACCTGGTATTTCCAGAAATTAGTTTCTA  838

seq1  ATTTTGAGGGGAGCCTGCTGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGGGGAGCCTGCTGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  888

seq1  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  938

seq1  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  988

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  1038

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  1088

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  1138

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  1177
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  1166