BAC Information

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BAC

Clone NameB6Ng01-323G20
Chromosome6 (Build37)
Map Location 106,063,272 - 106,182,835
singlet/doubletdoublet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323G20.bB6Ng01-323G20.g
ACCGA112005GA112006
length998962
definitionB6Ng01-323G20.b B6Ng01-323G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,182,321 - 106,182,835)(106,063,272 - 106,064,126)
sequence
gaattctttttttcccatattcttttttattgtatattttctttatttac
atttcaaatgttaccccctttccaggtctctcctccagaaacccattcgc
cctggccctgcattatgagggtgctcctccacacccccacccacccattc
cttcctacacccagtgtaggccttctcctacactggagcattgaactccc
tcagttaattgaagaaatacaaatgatcaatgaatatttggaaaagtatc
acatggcattactcatcagaggaatgcaaattaaaagtgttctctatttc
accttagcaaaatagctatagtggagaaaagaaatggcaatgaattctgt
cagggatgattagagaaggtttatttataactactggtaggaatggaagg
aaagtggtgtagcctctatggaaatctgcatgctcaagaaaatggaaatg
aaactaccacatgacaaagctacagcattcttggactacaaccaaagcaa
tctaagttaacaagtatacttttattgatgcacacgagacaatatacaca
acctgcttagatgtccattaactgatgaatgaatgaagaaccagttatgt
agctacacaactgaagctcattcagctgatgccaagaggatgagtttcaa
actgacacaaataaaggtaattatattaagagaaacagctatggatgttg
atgaaaataagaaaaatactaaaatgaaattttaagagcaattattatct
gtattttagtttggaacattgcatgaaaccttggtagtgctcagagataa
tgagcaaatgaaaccatgtggtatgaatgacttcaaaattaagtgtccag
taggagacatattttgaataagaacaagataactggagcctggcttcctg
cattcaacatcatagggtttccaactaccacatgagccatcctcagagta
ccattaatattcactgagcgttggtttcctagtttatgggatgagaaa

gaattcagtaggtgctcaataaatatttgttgactcaataaacaaaggca
gtgtgaaacagattttctaacaaaagttagtgaatcacagtgtgtttata
acaaatatcaactatcttcaaatggtatctattttagaagatgagaattc
tgagaagagagcatagaaaaagatgctcatctatttagagataaggacag
agacagaaagaacatatataaatggaatttaatttgcctatgagtcatgt
ctgttgtgttggtgatgggatacaggaagagaacaataaattctggtgtg
acattaagatatgttttagtcctaattatccctttccttgaattgtacca
ataaagatttacctgataatgtgacaatggctataacagacaccatggtc
tgacaaaaaaaaaaaaattgcctagtgctaggaataggttacctcttttg
gaactgacagccagtgatatcccatcaatcccaaaccctaaggaatattc
tcagtgttctttcttgccctcaagaactttgatataaagaccacatattt
gagttggagaatatgaaaaaaaattcagatagttcatacctacaagccct
gtccttacttgctagctttcatgaaggtagaagatacaattcacaccagc
aaaggaaaaaaaaaatgaaatcatctgtcttacccaaatgtgaaccctga
aagctaccatgatgtctgatcagtggtgaaatgggccacaaatgtagaaa
aaagaaagaaatcaacaacaaaataacttcttacttgtatatagggtcta
ctgtacaactgaaatccataaaagccattgatatcatggtgaaaaaaaag
gggagctactatagtggatataaaccctgggtcacaacctccaactgtta
aatggacatggtattaaaactattcctaatgattatccttatacctatgg
gaataattctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106182321_106182835
seq2: B6Ng01-323G20.b_44_558 (reverse)

seq1  ACTTGTTAACTTAGATTGCTTTGGTTGTAGTCCAAGAATGCTGTAGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTAACTTAGATTGCTTTGGTTGTAGTCCAAGAATGCTGTAGCTTT  50

seq1  GTCATGTGGTAGTTTCATTTCCATTTTCTTGAGCATGCAGATTTCCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGGTAGTTTCATTTCCATTTTCTTGAGCATGCAGATTTCCATAG  100

seq1  AGGCTACACCACTTTCCTTCCATTCCTACCAGTAGTTATAAATAAACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACACCACTTTCCTTCCATTCCTACCAGTAGTTATAAATAAACCTT  150

seq1  CTCTAATCATCCCTGACAGAATTCATTGCCATTTCTTTTCTCCACTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATCATCCCTGACAGAATTCATTGCCATTTCTTTTCTCCACTATAG  200

seq1  CTATTTTGCTAAGGTGAAATAGAGAACACTTTTAATTTGCATTCCTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGCTAAGGTGAAATAGAGAACACTTTTAATTTGCATTCCTCTGA  250

seq1  TGAGTAATGCCATGTGATACTTTTCCAAATATTCATTGATCATTTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAATGCCATGTGATACTTTTCCAAATATTCATTGATCATTTGTATT  300

seq1  TCTTCAATTAACTGAGGGAGTTCAATGCTCCAGTGTAGGAGAAGGCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATTAACTGAGGGAGTTCAATGCTCCAGTGTAGGAGAAGGCCTAC  350

seq1  ACTGGGTGTAGGAAGGAATGGGTGGGTGGGGGTGTGGAGGAGCACCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGTAGGAAGGAATGGGTGGGTGGGGGTGTGGAGGAGCACCCTCA  400

seq1  TAATGCAGGGCCAGGGCGAATGGGTTTCTGGAGGAGAGACCTGGAAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGGGCCAGGGCGAATGGGTTTCTGGAGGAGAGACCTGGAAAGGG  450

seq1  GGTAACATTTGAAATGTAAATAAAGAAAATATACAATAAAAAAGAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACATTTGAAATGTAAATAAAGAAAATATACAATAAAAAAGAATATG  500

seq1  GGAAAAAAAGAATTC  515
      |||||||||||||||
seq2  GGAAAAAAAGAATTC  515


seq1: chr6_106063272_106064126
seq2: B6Ng01-323G20.g_64_918

seq1  GAATTCAGTAGGTGCTCAATAAATATTTGTTGACTCAATAAACAAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGGTGCTCAATAAATATTTGTTGACTCAATAAACAAAGGCA  50

seq1  GTGTGAAACAGATTTTCTAACAAAAGTTAGTGAATCACAGTGTGTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAACAGATTTTCTAACAAAAGTTAGTGAATCACAGTGTGTTTATA  100

seq1  ACAAATATCAACTATCTTCAAATGGTATCTATTTTAGAAGATGAGAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATCAACTATCTTCAAATGGTATCTATTTTAGAAGATGAGAATTC  150

seq1  TGAGAAGAGAGCATAGAAAAAGATGCTCATCTATTTAGAGATAAGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAGAGCATAGAAAAAGATGCTCATCTATTTAGAGATAAGGACAG  200

seq1  AGACAGAAAGAACATATATAAATGGAATTTAATTTGCCTATGAGTCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAAGAACATATATAAATGGAATTTAATTTGCCTATGAGTCATGT  250

seq1  CTGTTGTGTTGGTGATGGGATACAGGAAGAGAACAATAAATTCTGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTGTTGGTGATGGGATACAGGAAGAGAACAATAAATTCTGGTGTG  300

seq1  ACATTAAGATATGTTTTAGTCCTAATTATCCCTTTCCTTGAATTGTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAGATATGTTTTAGTCCTAATTATCCCTTTCCTTGAATTGTACCA  350

seq1  ATAAAGATTTACCTGATAATGTGACAATGGCTATAACAGACACCATGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATTTACCTGATAATGTGACAATGGCTATAACAGACACCATGGTC  400

seq1  TGACAAAAAAAAAAAAATTGCCTAGTGCTAGGAATAGGTTACCTCTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAAAAAAAAAATTGCCTAGTGCTAGGAATAGGTTACCTCTTTTG  450

seq1  GAACTGACAGCCAGTGATATCCCATCAATCCCAAACCCTAAGGAATATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGACAGCCAGTGATATCCCATCAATCCCAAACCCTAAGGAATATTC  500

seq1  TCAGTGTTCTTTCTTGCCCTCAAGAACTTTGATATAAAGACCACATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTCTTTCTTGCCCTCAAGAACTTTGATATAAAGACCACATATTT  550

seq1  GAGTTGGAGAATATGAAAAAAAATTCAGATAGTTCATACCTACAAGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGAGAATATGAAAAAAAATTCAGATAGTTCATACCTACAAGCCCT  600

seq1  GTCCTTACTTGCTAGCTTTCATGAAGGTAGAAGATACAATTCACACCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTACTTGCTAGCTTTCATGAAGGTAGAAGATACAATTCACACCAGC  650

seq1  AAAGGAAAAAAAAAATGAAATCATCTGTCTTACCCAAATGTGAACCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAAAAAAATGAAATCATCTGTCTTACCCAAATGTGAACCCTGA  700

seq1  AAGCTACCATGATGTCTGATCAGTGGTGAAATGGGCCACAAATGTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACCATGATGTCTGATCAGTGGTGAAATGGGCCACAAATGTAGAAA  750

seq1  AAAGAAAGAAATCAACAACAAAATAACTTCTTACTTGTATATAGGGTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAATCAACAACAAAATAACTTCTTACTTGTATATAGGGTCTA  800

seq1  CTGTACAACTGAAATCCATAAAAGCCATTGATATCATGGTGAAAAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAACTGAAATCCATAAAAGCCATTGATATCATGGTGAAAAAAAAG  850

seq1  GGGAG  855
      |||||
seq2  GGGAG  855


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