BAC Information

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BAC

Clone NameB6Ng01-324K08
Chromosome6 (Build37)
Map Location 103,335,652 - 103,336,816
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn3
Downstream geneChl1, LOC666141, LOC100043345
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324K08.bB6Ng01-324K08.g
ACCGA112905GA112906
length1,1501,184
definitionB6Ng01-324K08.b B6Ng01-324K08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcacctagggttcttgaaggacaaacactgaaagacttaggtc
agttgctcaatccatagtagatactaatgcatggtaggtgctgtatgaaa
ttttctgaatgtatgagtgagtagatgtatctgaagtaagagcatcactt
cagtctaagcagatggccataaggccctagagaaggaggaaattaaatgc
attgcacactaatgaatatttgacaaatgaaaagaaagagagagagatta
aaattgtgcctggaacctcagtaggtattcagtaagcccagcaagcagag
actgtttctggataggtgtactggcttgtgatctcagtactgctattcat
tcttatattggtagtttgtacttaagtctgatacacctacttcttttcag
aactacctaagagggtccatatactgattctgctgggaatctatgactgt
ccccttgcagatgataaccgagttctgacaacctttcacaaggcttttgt
gaagtactctgggcatcatacggacttctttttaccaatagcctttattt
attaaagccatggaaactggagtagtagatgtattaatgatgagacctga
atctctattgtattttactgagattccatttcagccacagaaatgctgaa
tgcctgctggtgaaatgcaatttcttgagtaccacatattaaaggacatc
atatttcatctttccatgcctgaggtttatccaaacaaaggaaatgggtt
gttaccaaggaaagcataattcaaaattccaattataactgttaaaccac
atgtgaaattacttttaataattaaaaatggctcttgccacttggcaatc
ttggctcaatattacgtctgctgccattttaaggagaactaataatctct
agcaaatcccgatgacctttaattgtcttcacggccacccttcagtgacc
ttatcgcttagatggttaaatctaaataaatgatactaatatatctgcct
ggcaagggcattgtgtgcattctactatgaatccattgtttccaaatgcc
tttctctgatgagtgagctgctttggggaaagactctatacgggtattat
tttaaatcaaattttcaagtgcgtaggcagaatgtccaataagaatagta


gaattctcacctgaggtaatacagaatggcagagaagcacctgaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaaga
ttccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacag
cagatgctggcgtggatgtggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctc
agaaaattggacatagtactaccggaggatccagcaatacctctcttggg
catatatccagaagatgccccaactggtaagaaggacacatgctccacta
tgttcatagcagcattatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtggatattagcccaaaac
ctaggatacccaagatataagatacaatttcctaaacacatgaaactcaa
gaaaaatgaagactgaagtgtagacactatgcccctccttagaagtggga
acaaaacacccttggaaggagttacagagacaaagtttggagctgagatt
aaagggtggaccatgtagagactgccttatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttatcgaa
aggacccagatgtagctgtctcttgtgagactatgccggggcctagcaac
acagaagtggatgcccacagtcagctaatggacggatcacaggctcccaa
tggagagctagagaaagtaccaaggagctaaagggatctgcaaccctata
ggtgatcaacattatgactaccagtaccccggagctcttgactctagctg
catatgtatcaaagatgacctagtcgcatcactggcaagagaagccattg
gaacaaccaacttaatgcccagaacaggaacgcagctaaaggtatggccg
ggtatacgtgagtgggtgttcaatactcctattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103335652_103336816
seq2: B6Ng01-324K08.b_48_1197

seq1  GAATTCCTCACCTAGGGTTCTTGAAGGACAAACACTGAAAGACTTAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACCTAGGGTTCTTGAAGGACAAACACTGAAAGACTTAGGTC  50

seq1  AGTTGCTCAATCCATAGTAGATACTAATGCATGGTAGGTGCTGTATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTCAATCCATAGTAGATACTAATGCATGGTAGGTGCTGTATGAAA  100

seq1  TTTTCTGAATGTATGAGTGAGTAGATGTATCTGAAGTAAGAGCATCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAATGTATGAGTGAGTAGATGTATCTGAAGTAAGAGCATCACTT  150

seq1  CAGTCTAAGCAGATGGCCATAAGGCCCTAGAGAAGGAGGAAATTAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAAGCAGATGGCCATAAGGCCCTAGAGAAGGAGGAAATTAAATGC  200

seq1  ATTGCACACTAATGAATATTTGACAAATGAAAAGAAAGAGAGAGAGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACACTAATGAATATTTGACAAATGAAAAGAAAGAGAGAGAGATTA  250

seq1  AAATTGTGCCTGGAACCTCAGTAGGTATTCAGTAAGCCCAGCAAGCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGCCTGGAACCTCAGTAGGTATTCAGTAAGCCCAGCAAGCAGAG  300

seq1  ACTGTTTCTGGATAGGTGTACTGGCTTGTGATCTCAGTACTGCTATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCTGGATAGGTGTACTGGCTTGTGATCTCAGTACTGCTATTCAT  350

seq1  TCTTATATTGGTAGTTTGTACTTAAGTCTGATACACCTACTTCTTTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATTGGTAGTTTGTACTTAAGTCTGATACACCTACTTCTTTTCAG  400

seq1  AACTACCTAAGAGGGTCCATATACTGATTCTGCTGGGAATCTATGACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCTAAGAGGGTCCATATACTGATTCTGCTGGGAATCTATGACTGT  450

seq1  CCCCTTGCAGATGATAACCGAGTTCTGACAACCTTTCACAAGGCTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCAGATGATAACCGAGTTCTGACAACCTTTCACAAGGCTTTTGT  500

seq1  GAAGTACTCTGGGCATCATACGGACTTCTTTTTACCAATAGCCTTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACTCTGGGCATCATACGGACTTCTTTTTACCAATAGCCTTTATTT  550

seq1  ATTAAAGCCATGGAAACTGGAGTAGTAGATGTATTAATGATGAGACCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCCATGGAAACTGGAGTAGTAGATGTATTAATGATGAGACCTGA  600

seq1  ATCTCTATTGTATTTTACTGAGATTCCATTTCAGCCACAGAAATGCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATTGTATTTTACTGAGATTCCATTTCAGCCACAGAAATGCTGAA  650

seq1  TGCCTGCTGGTGAAATGCAATTTCTTGAGTACCACATATTAAAGGACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTGGTGAAATGCAATTTCTTGAGTACCACATATTAAAGGACATC  700

seq1  ATATTTCATCTTTCCATGCCTGAGGTTTATCCAAACAAAGGAAATGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATCTTTCCATGCCTGAGGTTTATCCAAACAAAGGAAATGGGTT  750

seq1  GTTACCAAGGAAAGCATAATTCAAAATTCCAATTATAACTGTTAAACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAAGGAAAGCATAATTCAAAATTCCAATTATAACTGTTAAACCAC  800

seq1  ATGTGAAATTACTTTTAATAATTAAAAATGGCTCTTGCCACTTGGCAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAATTACTTTTAATAATTAAAAATGGCTCTTGCCACTTGGCAATC  850

seq1  TTGGCTCAATATTACGTCTGCTGCCATTTTAAGGAGAACTAATAATCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCAATATTACGTCTGCTGCCATTTTAAGGAGAACTAATAATCTCT  900

seq1  AGCAAATCCCGATGACC-TTAATTGTCTTCACGGCCACCCTTCAGTGACC  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCAAATCCCGATGACCTTTAATTGTCTTCACGGCCACCCTTCAGTGACC  950

seq1  TTTATCGCTTAGATGGTTAAAATCTAAAATAAATGATACTAATATATCTG  999
       ||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  -TTATCGCTTAGATGGTT-AAATCT-AAATAAATGATACTAATATATCTG  997

seq1  CCTGGCAAGGGCATTGTGTGCATTTCTACTATGAATCCATTGTTTCCAAA  1049
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  CCTGGCAAGGGCATTGTGTGCA-TTCTACTATGAATCCATTGTTTCC-AA  1045

seq1  ATGCCTTTTCTCTGATGAGTTGAGCTTGCTTTGGGGAAAAGACTCTTATT  1099
      ||||| ||||||||||||| ||||| |||||||||| |||||||||   |
seq2  ATGCC-TTTCTCTGATGAG-TGAGC-TGCTTTGGGG-AAAGACTCT--AT  1089

seq1  ACGGGTATATTTTTAAATTCACATTTTCAAGTGCGTAGGGAAGGAAATGT  1149
      ||||||||  ||||||| ||| ||||||||||||||||| |    |||||
seq2  ACGGGTATTATTTTAAA-TCAAATTTTCAAGTGCGTAGGCA---GAATGT  1135

seq1  -CAATAAGAAAATAGTA  1165
       |||||||  |||||||
seq2  CCAATAAG--AATAGTA  1150


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