BAC Information

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BAC

Clone NameB6Ng01-325G10
Chromosome6 (Build37)
Map Location 23,210,835 - 23,212,074
singlet/doubletsinglet
Overlap genenone
Upstream geneWnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1
Downstream geneCadps2, Rnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325G10.bB6Ng01-325G10.g
ACCGA113469GA113470
length1,2081,183
definitionB6Ng01-325G10.b B6Ng01-325G10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagtggaaaaatacgtgaatgcccgggactactacagctggcgc
acagaggtttcctcagggctgtgtagcaccgtgtcttgccagaaaggaca
tcgacctgctctttcttcaagaaatgtttgaacgaacgttctttgcagat
gggttcacaacccttctccagtggacctcacatatatctctctctgctct
tgcctacattcacgatgcgtgatcccacttcaaacattttgcaggacttg
ataggttttcaaatcctcacttttgtttttccttcctaaaagtacttttg
aaagaaaaaaataccatctaaaactgggcttgcgttcatagttgaagtta
tatagggtagagagaatttctgggcaaaagtgcacagaagcacttttctc
tccttttcagttacttcttaaagatttttagcgctcagttttgtgactca
aaggtcagtgtgattagacaaaatatgagcaacgccataacttggtttgc
tattgtcctacctgtgggcattttgggtaggaaggaggaaatggagcctt
agataaggagcagaaagtgtcacccttggcagaaagacccaggctgccat
agttagatgtcacatgcaatgcccctacatcaactgctttcccccttgcc
gtgagtcctgccaactagagatttcctttggacaaacggtgttttaaaga
attcccgtagagttaaggagtcagcagtcaccagctaggacatggaacaa
cccgagtcaattagactggcatgctattaagaaaaatggatatttcactg
cagaaaagagggtgtttggaacaggtcagcagtacagtatgccaccagaa
tgcagaaggccaagagttccactctacacacacgcatgcacgtgtgcacg
cacacactggttttcacacaaagagcagcgttgtgttgaggagaaagtgc
cactgggtagttaagggttacatgcctggatacttagggatgtaaggcaa
ggggcactgatatggagaaggcaggaagatgtctgtggataaactgattt
caaaccagtgagtccttattctctcatggaggacagggagaactgtctct
tgtatctgcatctgcattagaactaacatcgaccactatgaatttgtaat
aatgggataaatcaattgcatactggagtctactccacatatagggacat
gacaggag
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctcccgttttttc
ttgaagccactcatagctatgagtttccctcttagaaatgctttcattgt
gtcccaaggtttgggttacgtgtgcttcatttcattaactctaaaagtct
ttatttcttctttattccttccttgaccaaggatcatgagaagaggttgt
tcagttccatgtgaatgttggcttcgttattatttgtcattggagatcag
ctttagtcatgtgatcgtggatagggaactact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_23210835_23212074
seq2: B6Ng01-325G10.b_42_1249

seq1  GAATTCAAGTGGAAAAATACGTGAATGCCCGGGACTACTACAGCTGGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGGAAAAATACGTGAATGCCCGGGACTACTACAGCTGGCGC  50

seq1  ACAGAGGTTTCCTCAGGGCTGTGTAGCACCGTGTCTTGCCAGAAAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTTTCCTCAGGGCTGTGTAGCACCGTGTCTTGCCAGAAAGGACA  100

seq1  TCGACCTGCTCTTTCTTCAAGAAATGTTTGAACGAACGTTCTTTGCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCTGCTCTTTCTTCAAGAAATGTTTGAACGAACGTTCTTTGCAGAT  150

seq1  GGGTTCACAACCCTTCTCCAGTGGACCTCACATATATCTCTCTCTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCACAACCCTTCTCCAGTGGACCTCACATATATCTCTCTCTGCTCT  200

seq1  TGCCTACATTCACGATGCGTGATCCCACTTCAAACATTTTGCAGGACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACATTCACGATGCGTGATCCCACTTCAAACATTTTGCAGGACTTG  250

seq1  ATAGGTTTTCAAATCCTCACTTTTGTTTTTCCTTCCTAAAAGTACTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTTTCAAATCCTCACTTTTGTTTTTCCTTCCTAAAAGTACTTTTG  300

seq1  AAAGAAAAAAATACCATCTAAAACTGGGCTTGCGTTCATAGTTGAAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAATACCATCTAAAACTGGGCTTGCGTTCATAGTTGAAGTTA  350

seq1  TATAGGGTAGAGAGAATTTCTGGGCAAAAGTGCACAGAAGCACTTTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGTAGAGAGAATTTCTGGGCAAAAGTGCACAGAAGCACTTTTCTC  400

seq1  TCCTTTTCAGTTACTTCTTAAAGATTTTTAGCGCTCAGTTTTGTGACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCAGTTACTTCTTAAAGATTTTTAGCGCTCAGTTTTGTGACTCA  450

seq1  AAGGTCAGTGTGATTAGACAAAATATGAGCAACGCCATAACTTGGTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGTGTGATTAGACAAAATATGAGCAACGCCATAACTTGGTTTGC  500

seq1  TATTGTCCTACCTGTGGGCATTTTGGGTAGGAAGGAGGAAATGGAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCCTACCTGTGGGCATTTTGGGTAGGAAGGAGGAAATGGAGCCTT  550

seq1  AGATAAGGAGCAGAAAGTGTCACCCTTGGCAGAAAGACCCAGGCTGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGAGCAGAAAGTGTCACCCTTGGCAGAAAGACCCAGGCTGCCAT  600

seq1  AGTTAGATGTCACATGCAATGCCCCTACATCAACTGCTTTCCCCCTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATGTCACATGCAATGCCCCTACATCAACTGCTTTCCCCCTTGCC  650

seq1  GTGAGTCCTGCCAACTAGAGATTTCCTTTGGACAAACGGTGTTTTAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCCTGCCAACTAGAGATTTCCTTTGGACAAACGGTGTTTTAAAGA  700

seq1  ATTCCCGTAGAGTTAAGGAGTCAGCAGTCACCAGCTAGGACATGGAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCGTAGAGTTAAGGAGTCAGCAGTCACCAGCTAGGACATGGAACAA  750

seq1  CCCGAGTCAATTAGACTGGCATGCTATTAAGAAAAATGGATATTTCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGTCAATTAGACTGGCATGCTATTAAGAAAAATGGATATTTCACTG  800

seq1  CAGAAAAGAGGGTGTTTGGAACAGGTCAGCAGTACAGTATGCCACCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGAGGGTGTTTGGAACAGGTCAGCAGTACAGTATGCCACCAGAA  850

seq1  TGCAGAAGGCCAAGAGTTCCACTCTACACACACGCATGCACGTGTGCACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGGCCAAGAGTTCCACTCTACACACACGCATGCACGTGTGCACG  900

seq1  CACACACTGGTTTTCACACAAAGAGCAGCGTTGTGTTGAGGAGAAAGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTGGTTTTCACACAAAGAGCAGCGTTGTGTTGAGGAGAAAGTGC  950

seq1  CACTGGGTAGTTAAGGGTTACATGCCTGGATACTTAGGGATGTAAGGCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTAGTTAAGGGTTACATGCCTGGATACTTAGGGATGTAAGGCAA  1000

seq1  GGGGCACTGATAATGGAGAAAGGCAGGAAGATGTCTGTGGATAAACTGAT  1050
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  GGGGCACTGAT-ATGGAG-AAGGCAGGAAGATGTCTGTGGATAAACTGAT  1048

seq1  TTCCAAACCAGTGAGTCCTTATTCTCTCATGGAGGACAAGGGAGGAAACT  1100
      || |||||||||||||||||||||||||||||||||| ||||||  ||||
seq2  TT-CAAACCAGTGAGTCCTTATTCTCTCATGGAGGAC-AGGGAG--AACT  1094

seq1  GTCTTCTTTTGTTTATCTTGCCATCTTGCATTTAGGACCTAAACATCGAA  1150
      ||| |||    | |||||   |||| |||| |||| ||   |||||||| 
seq2  GTC-TCT----TGTATCT--GCATC-TGCA-TTAGAAC--TAACATCGA-  1132

seq1  CCCAACTATTGATATGTAATAATTGTGGATAAATCAGATTTTGTGCACTA  1200
        | |||||  || |||||||||   |||||||||| ||    |||| ||
seq2  --CCACTATGAATTTGTAATAAT--GGGATAAATCA-AT----TGCA-TA  1172

seq1  CTTTGAGTGCCCTAATCACCATTATGGGACATGACAGGAG  1240
      | | ||||   ||| ||  |||   |||||||||||||||
seq2  C-TGGAGT---CTACTCCACATATAGGGACATGACAGGAG  1208