BAC Information

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BAC

Clone NameB6Ng01-325P08
Chromosome6 (Build37)10 (Build37)
Map Location 105,787,594 - 105,787,84043,832,704 - 43,833,812
singlet/doubletsingletsinglet
Overlap geneCntn4
Upstream geneCntn6, LOC384470, LOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325P08.bB6Ng01-325P08.g
ACCGA113886GA113887
length5411,108
definitionB6Ng01-325P08.b B6Ng01-325P08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,787,594 - 105,787,840)(43,832,704 - 43,833,812)
sequence
gaattccaaaacatttaaatgaacccacaatcttctaaagatctctaata
actcaaaggggaaaagatgaatgaattcaacaaaggacatctttaaaaga
atacactgaaaaagaaggtagagtaggaaactcactatacaaataaaagt
caaagctgagtcttgtaaatttccacaagcaacctaaaactctagtttgc
tgtagccatagctgcaatctttaaaacacaaatatataattaagtagtta
cagagattaatcacttttcccccaaagtattgggtaactataaaatttaa
tttcattttattgaaaatagattcttttctcatacaatatattttgatta
tagtttcccccctctctccccctgctgttcctagttccaccccaactccc
ttgtcctctggatccactccctttccagcttctaaggcatgacaagcaaa
catgacaaaataaaatataacaagatgaatcaaacacatccgtatcacaa
ctggacattgcagcccaacaggaggaaaagagtcccaagag

gaattcactgggtgttcagtttgttggattgttcaaatgcctgccatgtc
tggggcctgaaaaccttcaaaagtgagcaaggcaagcgtctagcctctat
catgacttcacagctccccgaaggaagaaacctgaaaaagaagtgtgtgt
catactcagactcagtgcttcctggcaagctaagctaagcccagatcaca
cacttcagggagacatcggtatcgcaaaggtctccctgacagatgcagca
gctcaaattcccacatgaggacagcaaagggttaggactggactccctgg
aatccggcggggtgtgggtgactattatacttaatctcggctaatccttc
gttagaaatgtttctaatgcagagatcactgcccggtgacccacccactg
ctctcagggtggcagacttggcagtagccttccactgaccccgaaccatc
tcagaaaggcacaatgtgcccactgtggaacagtgttccctgatgccacc
ctctcctttatcagagatgagagggataagactcaggcttactgaacaaa
cactggactggatcaggtgcattagaaatgcccaaccctcacagcctttg
gtattttctttgatgtttgcatcattcgaatcagattccacaagagtgat
tctcaactctctttacatgtatacctgtgcttcttgtaaaaagaaaacca
tttcaattatgcaggaaggagcaattctggagaattctcacagcacggtg
actataattaatgctattgaactgtggcctgacctggtagcacccacctg
tcatcttagcactgtagaggtgaatgcaggaaggtcaggagatctaggcc
agctctggctataaagcacgttcaagccaagctcgtattcaagaaaaaca
gacaaaactctattatcatctagatacttgagtttagtaagaaaggtctt
gtttgtttgtttgttttgtttgtttagggactggaagatgaagccagagc
ctcacacatgctaaagttctaccactgagtcattttgaagcccctggaga
agcaagatgttcttattgagaaaaacaagtagcatgtgaattgattaata
caatcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_105787594_105787840
seq2: B6Ng01-325P08.b_356_587 (reverse)

seq1  CTCTTGGAACTCTTTTCCTCCTGTTGGGTTGCCTTCTTCAATCTCGATAT  50
      ||||||| |||||||||||||||||||| |||  | | || |   |||| 
seq2  CTCTTGGGACTCTTTTCCTCCTGTTGGGCTGCAATGTCCAGTTGTGATAC  50

seq1  G--TGGGCTGCTGCCCTGTCTTATTGTATCTT-GTTTGTCCTGCTTGACT  97
      |  || | |  ||     |||| || ||| ||  |||||| || |||  |
seq2  GGATGTGTT--TGATTCATCTTGTTATATTTTATTTTGTCATGTTTGCTT  98

seq1  GT--TGGCTGTTGGAAGCCTGTTCTGTTTTGAAGAAGAAACAGAGGGGGA  145
      ||  || |  || |||||           ||     ||||      ||||
seq2  GTCATGCC--TTAGAAGC-----------TG-----GAAA------GGGA  124

seq1  ATGTAT-CTGTGG--AAGCGAGTAGGTGTGGGGTATCTGGG---AGGAGA  189
       || || | | ||  ||| |||| || ||||   | || ||   || || 
seq2  GTGGATCCAGAGGACAAGGGAGTTGGGGTGG---AACTAGGAACAGCAGG  171

seq1  GTG-GAGGAAGGGGAAAC--TGGCCAGTGTGTCTTGTATGAGAGAAGAAT  236
      | | |||   ||||||||  |   ||   | | |||||||||| ||||||
seq2  GGGAGAGAGGGGGGAAACTATAATCAAAATATATTGTATGAGAAAAGAAT  221

seq1  CTATTTTCAAT  247
      |||||||||||
seq2  CTATTTTCAAT  232


seq1: chr10_43832704_43833812
seq2: B6Ng01-325P08.g_68_1175

seq1  GAATTCACTGGGTGTTCAGTTTGTTGGATTGTTCAAATGCCTGCCATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGGTGTTCAGTTTGTTGGATTGTTCAAATGCCTGCCATGTC  50

seq1  TGGGGCCTGAAAACCTTCAAAAGTGAGCAAGGCAAGCGTCTAGCCTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTGAAAACCTTCAAAAGTGAGCAAGGCAAGCGTCTAGCCTCTAT  100

seq1  CATGACTTCACAGCTCCCCGAAGGAAGAAACCTGAAAAAGAAGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTCACAGCTCCCCGAAGGAAGAAACCTGAAAAAGAAGTGTGTGT  150

seq1  CATACTCAGACTCAGTGCTTCCTGGCAAGCTAAGCTAAGCCCAGATCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCAGACTCAGTGCTTCCTGGCAAGCTAAGCTAAGCCCAGATCACA  200

seq1  CACTTCAGGGAGACATCGGTATCGCAAAGGTCTCCCTGACAGATGCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGGGAGACATCGGTATCGCAAAGGTCTCCCTGACAGATGCAGCA  250

seq1  GCTCAAATTCCCACATGAGGACAGCAAAGGGTTAGGACTGGACTCCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATTCCCACATGAGGACAGCAAAGGGTTAGGACTGGACTCCCTGG  300

seq1  AATCCGGCGGGGTGTGGGTGACTATTATACTTAATCTCGGCTAATCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGGCGGGGTGTGGGTGACTATTATACTTAATCTCGGCTAATCCTTC  350

seq1  GTTAGAAATGTTTCTAATGCAGAGATCACTGCCCGGTGACCCACCCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAATGTTTCTAATGCAGAGATCACTGCCCGGTGACCCACCCACTG  400

seq1  CTCTCAGGGTGGCAGACTTGGCAGTAGCCTTCCACTGACCCCGAACCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGGTGGCAGACTTGGCAGTAGCCTTCCACTGACCCCGAACCATC  450

seq1  TCAGAAAGGCACAATGTGCCCACTGTGGAACAGTGTTCCCTGATGCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGGCACAATGTGCCCACTGTGGAACAGTGTTCCCTGATGCCACC  500

seq1  CTCTCCTTTATCAGAGATGAGAGGGATAAGACTCAGGCTTACTGAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTTATCAGAGATGAGAGGGATAAGACTCAGGCTTACTGAACAAA  550

seq1  CACTGGACTGGATCAGGTGCATTAGAAATGCCCAACCCTCACAGCCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGACTGGATCAGGTGCATTAGAAATGCCCAACCCTCACAGCCTTTG  600

seq1  GTATTTTCTTTGATGTTTGCATCATTCGAATCAGATTCCACAAGAGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCTTTGATGTTTGCATCATTCGAATCAGATTCCACAAGAGTGAT  650

seq1  TCTCAACTCTCTTTACATGTATACCTGTGCTTCTTGTAAAAAGAAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTCTCTTTACATGTATACCTGTGCTTCTTGTAAAAAGAAAACCA  700

seq1  TTTCAATTATGCAGGAAGGAGCAATTCTGGAGAATTCTCACAGCACGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTATGCAGGAAGGAGCAATTCTGGAGAATTCTCACAGCACGGTG  750

seq1  ACTATAATTAATGCTATTGAACTGTGGCCTGACCTGGTAGCACCCACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATTAATGCTATTGAACTGTGGCCTGACCTGGTAGCACCCACCTG  800

seq1  TCATCTTAGCACTGTAGAGGTGAATGCAGGAAGGTCAGGAGATCTAGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTAGCACTGTAGAGGTGAATGCAGGAAGGTCAGGAGATCTAGGCC  850

seq1  AGCTCTGGCTATAAAGCACGTTCAAGGCCAAGCTCGTATTCAAGAAAAAC  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCTCTGGCTATAAAGCACGTTCAA-GCCAAGCTCGTATTCAAGAAAAAC  899

seq1  AGAC-AAACTCTATTATCATCTAGATACTTGAGTTTAGTAAGAAAGGTCT  949
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAACTCTATTATCATCTAGATACTTGAGTTTAGTAAGAAAGGTCT  949

seq1  TGTTTGTTTGTTTGTTTTGTTTGTTTTAGGGACTGGAAGATGAAGCCAGA  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTTGTTTG-TTTAGGGACTGGAAGATGAAGCCAGA  998

seq1  GCCTCACACATGCTAAAGGTTCTACCACTGAGTCATTTTG-AGCCCCT-G  1047
      ||||||||||||||||| |||||||||||||||||||||| ||||||| |
seq2  GCCTCACACATGCTAAA-GTTCTACCACTGAGTCATTTTGAAGCCCCTGG  1047

seq1  AGAAGCAAGATGTTCTTA-TGAGGAAAACAAGTAGCCATGTGAATTGATA  1096
      |||||||||||||||||| |||| ||||||||||| ||||||||||||| 
seq2  AGAAGCAAGATGTTCTTATTGAGAAAAACAAGTAG-CATGTGAATTGATT  1096

seq1  ATTAACAATCATT  1109
      | | |||||||||
seq2  AAT-ACAATCATT  1108


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