BAC Information

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BAC

Clone NameB6Ng01-327A17
Chromosome6 (Build37)
Map Location 65,468,475 - 65,469,619
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid2, Atoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik
Downstream gene9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327A17.bB6Ng01-327A17.g
ACCGA114692GA114693
length1,1421,178
definitionB6Ng01-327A17.b B6Ng01-327A17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagttctttctgcttgtgcatgttgacaaagtacatgatggact
cttattgctttgtttgtgttggtctcagtttgcatgatcaccctacaaga
acagcaataatcttggaagaggaggaaaataaacttcccaaattgtccaa
agagcttaaaaagctcttttggctgaagtcacaaaggcagggtgaaatgc
aagactcccagccttctagatgcgattaggagtccatgtaacgagtctgg
ccttgcgcagagtaataaccccagaggcatacagtgaaacacctaatggt
tcttgaggcagccatcaggggtagcaaggaatgagccacccaagggataa
cagccactcacgtcttattttgagtttgttttggtttgaggaaagtttat
tgttgttttgagataggtctcactctatatattgtggggaccttgaactt
tcaaggatcctccaatcttgaaactacaggcataatccaccatgtacagc
tacagtctgtgttctggacagactggaggaaccctcaactctgagcaggc
cctcctaggcaactcggaagatctactaagttggcccttaggctgctagc
aggctaatcctgtgtgctctgattcctctaggatcagagggatgttccct
gatctgcttctccttgcagcaaggactccagtaggcactcatattgtcct
cccaggacgcacatggtcagtaaaagagagaatgttgaattgtgcatggt
atttctggtacccaattacttgttacattcattaagtaacagaacatggc
tagtctgacaacagctattgtgtaaatgaatagagaaaggatgcctcgaa
tttctgaactggtcgccatatttaaaaacaaaagagaaggtacttcttca
tttctctatgttctatgctttgggactgtgtatattttatattgttctta
tgattaacattgataatttaaaagttaaagaaagaatatattttaggtct
ttggctactcctgaattctctgcacctaccattatttacaaaatagagga
aaaagtttgcatgaatatttcataaaatattcaaatattcttataccata
taaaattattcaatcacaggttccccaagactatttactgta
gaattcttaagatttgttagtgcagtttgaagcctaagatgaaagttttg
acatatttttataggctttggatagaacaccataagcaagcatgacaaag
aagacagagccagaagcttacacatagcaacagaaatcaggtataaaata
tgtcattaaagaaaatgtcccaaaagcaatttacagattcagtgtaatct
tcagcaaaattccaaatcaattcttcattaaagaattaatgagaaagagc
aatttgcaaactcatttgaggaaaaaaaaacccagatagcaaaaactatt
ctcaacaataaaagaactttgggcgaaatcaccatccctgacctcaagct
gtactgcagagcaatccgtgataaaaacctgcatggtattggtacagtga
caggcaggtagatcaatggaatagaattgaagacccacacacctatggtc
acttgatctttgacaaaggagctaaaaccatccagtggaaaaaagacaga
attttcaacaaatggtgctggttcaactgacagcatgtagaagaatgcaa
atcgattcattcttatctccttgaacaaagctcaagtccaagtggatcaa
ggaactccacacaaaaccagatacaatgaaacgaatagaagagaaagtgg
gaaagagccttgagcacatgggcacaggggaaattttcctgaatagaaca
ccaatagcttatgctctaagatcaagaattgacaaatgggtcctcataaa
attgcaacgcttctgtaaggcaaaggacactgtcaataggacaaaactgc
aacctacagattgggaaaagatctttaccaaccctacatcctagagaggg
ctaatatccaatatatacaaagaactcaagaagttagactccagagaacc
aaataaccctatttaaaatggggtacagagctaaagaaattctcaactga
ggaatatagaaaggctgagaagcccctaaagaaatgttcaacatccttag
tcttcagtgaaatggaaatcaaacaaccctgagatcgacttacacagtca
actggctaagacaaaactcagacagtccacacttttgccttagctccaaa
cctttgtctctggtactctcaatgggatttgttccctatctaaggagatg
aagtattcaccacccacagttgagtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_65468475_65469619
seq2: B6Ng01-327A17.b_47_1188

seq1  GAATTCAAGTTCTTTCTGCTTGTGCATGTTGACAAAGTACATGATGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTCTTTCTGCTTGTGCATGTTGACAAAGTACATGATGGACT  50

seq1  CTTATTGCTTTGTTTGTGTTGGTCTCAGTTTGCATGATCACCCTACAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGCTTTGTTTGTGTTGGTCTCAGTTTGCATGATCACCCTACAAGA  100

seq1  ACAGCAATAATCTTGGAAGAGGAGGAAAATAAACTTCCCAAATTGTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATAATCTTGGAAGAGGAGGAAAATAAACTTCCCAAATTGTCCAA  150

seq1  AGAGCTTAAAAAGCTCTTTTGGCTGAAGTCACAAAGGCAGGGTGAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTAAAAAGCTCTTTTGGCTGAAGTCACAAAGGCAGGGTGAAATGC  200

seq1  AAGACTCCCAGCCTTCTAGATGCGATTAGGAGTCCATGTAACGAGTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCCAGCCTTCTAGATGCGATTAGGAGTCCATGTAACGAGTCTGG  250

seq1  CCTTGCGCAGAGTAATAACCCCAGAGGCATACAGTGAAACACCTAATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCGCAGAGTAATAACCCCAGAGGCATACAGTGAAACACCTAATGGT  300

seq1  TCTTGAGGCAGCCATCAGGGGTAGCAAGGAATGAGCCACCCAAGGGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGCAGCCATCAGGGGTAGCAAGGAATGAGCCACCCAAGGGATAA  350

seq1  CAGCCACTCACGTCTTATTTTGAGTTTGTTTTGGTTTGAGGAAAGTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTCACGTCTTATTTTGAGTTTGTTTTGGTTTGAGGAAAGTTTAT  400

seq1  TGTTGTTTTGAGATAGGTCTCACTCTATATATTGTGGGGACCTTGAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTGAGATAGGTCTCACTCTATATATTGTGGGGACCTTGAACTT  450

seq1  TCAAGGATCCTCCAATCTTGAAACTACAGGCATAATCCACCATGTACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGATCCTCCAATCTTGAAACTACAGGCATAATCCACCATGTACAGC  500

seq1  TACAGTCTGTGTTCTGGACAGACTGGAGGAACCCTCAACTCTGAGCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTGTGTTCTGGACAGACTGGAGGAACCCTCAACTCTGAGCAGGC  550

seq1  CCTCCTAGGCAACTCGGAAGATCTACTAAGTTGGCCCTTAGGCTGCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGGCAACTCGGAAGATCTACTAAGTTGGCCCTTAGGCTGCTAGC  600

seq1  AGGCTAATCCTGTGTGCTCTGATTCCTCTAGGATCAGAGGGATGTTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAATCCTGTGTGCTCTGATTCCTCTAGGATCAGAGGGATGTTCCCT  650

seq1  GATCTGCTTCTCCTTGCAGCAAGGACTCCAGTAGGCACTCATATTGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTTCTCCTTGCAGCAAGGACTCCAGTAGGCACTCATATTGTCCT  700

seq1  CCCAGGACGCACATGGTCAGTAAAAGAGAGAATGTTGAATTGTGCATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACGCACATGGTCAGTAAAAGAGAGAATGTTGAATTGTGCATGGT  750

seq1  ATTTCTGGTACCCAATTACTTGTTACATTCATTAAGTAACAGAACATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGTACCCAATTACTTGTTACATTCATTAAGTAACAGAACATGGC  800

seq1  TAGTCTGACAACAGCTATTGTGTAAATGAATAGAGAAAGGATGCCTCGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGACAACAGCTATTGTGTAAATGAATAGAGAAAGGATGCCTCGAA  850

seq1  TTTCTGAACTGGTCGCCATATTTAAAAACAAAAGAGAAGGTACTTCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAACTGGTCGCCATATTTAAAAACAAAAGAGAAGGTACTTCTTCA  900

seq1  TTTCTCTATGTTCTATGCTTTGGGACTGTGTATATTTTATATTGTTCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTATGTTCTATGCTTTGGGACTGTGTATATTTTATATTGTTCTTA  950

seq1  TGATTAACATTGATAATTTAAAAGTTAAAGAAAGAATATATTTTAGGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAACATTGATAATTTAAAAGTTAAAGAAAGAATATATTTTAGGTCT  1000

seq1  TTGGCTACTCCTG-ATTCTCTGCAACCCTACCATTATTTACAAAATAGAG  1049
      ||||||||||||| ||||||||||  ||||||||||||||||||||||||
seq2  TTGGCTACTCCTGAATTCTCTGCA--CCTACCATTATTTACAAAATAGAG  1048

seq1  GAAAAAAGTTTTGCATTGAATATTTCAT-AAATA-TCAAATATTCTTATA  1097
      ||||||   |||||| |||||||||||| ||||| |||||||||||||||
seq2  GAAAAA--GTTTGCA-TGAATATTTCATAAAATATTCAAATATTCTTATA  1095

seq1  CAATAATAAAATATACAATCACAGTTTCCCCAAGACCTATTTACTGTA  1145
      | |||  ||| ||| ||||||||| |||||||||| ||||||||||||
seq2  CCATATAAAATTATTCAATCACAGGTTCCCCAAGA-CTATTTACTGTA  1142