BAC Information

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BAC

Clone NameB6Ng01-327F20
Chromosome6 (Build37)
Map Location 37,916,589 - 38,067,673
singlet/doubletdoublet
Overlap geneSvopl, Atp6v0a4, LOC100039657, D630002J15Rik
Upstream geneDgki, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24
Downstream geneD630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327F20.bB6Ng01-327F20.g
ACCGA114931GA114932
length1,144271
definitionB6Ng01-327F20.b B6Ng01-327F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,066,526 - 38,067,673)(37,916,589 - 37,916,859)
sequence
gaattcagcaccggcttctgacctgtgcaggcaccagacacatggtgcac
agacatgcatacaggcaaaacactcatcagcatacaaattccaaacccac
ccagccagctcacctcatctccttggttttcatggaatcccaaagatgtc
tgtcaaaattaatctgtctgcatgacattaactgtccagcagtgcacatg
tgggtaaaagctgtcagatgttgcctccctactgactaccttctccacaa
atgcttcccatcatacccagtgtgtccgcggtgaccacccacgactccca
gtccccttcccagggctccttcgacagaattgccctcagaaaattgggga
gcgggagctgggcttgctcctcttgatcgggaacctgacagcgtccatcc
agaaatagggtggaaagccgcctctcaaggaagtattggagatactggga
gactctgcctgtctcccaggagataacaactcttacagtggttcatcaag
tctgggaaattgacttcaagatgttcaaaagaatctaaaaactattagaa
atctcttcctacctggcatattattctagtgtcttatgaattcagagtga
tctgacctgcactcagcaggaggctggccatcactgcttggatgtatacc
cacattgtccagctttggcccgagtctagtgtttcttttcacactccaaa
actgaagggcagcttctgccctgagggtcaatcctggtggtcttatttta
ggaaagtctgccccagaattgtcctttcagtcacatttcctcagccctac
ataaccttaacataagagaacatgggacatccctgtacctagcgctgaat
gtgtgggcctttgtggtggtgcatacctgtcatcccagagctacagaggc
ggaggcaggaggatcagaagtccaaggctagcatgggctagcatggggta
caggagatccagtcctcagttacatgttgagtacaggccagctgattacg
ggagattttttgttctcacaaactcacaaaaaatgaaacaaagcagcaga
tggactgcgttacagctgctctggtggaacaagcagctctgccttccgct
tcccacacaagcaccccaactgttgatgagcttctctgagacag
actctgtagaccaggatggcctcaaacttagagacctacctgccgctgcc
tcccaaatgctgggattaaaagtgtgagccaaaggctcacagtcacactc
agtagaagcatcaaatatacaatagggggcaccaatatttgatagatttc
tatagcttgtgccctggggctgccctgttgaagttccctgaatgggcttt
caatctgtctttctcatttcaaataagcggatgttgtggagttgggaaga
gatcatttgggggaaggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38066526_38067673
seq2: B6Ng01-327F20.b_48_1191 (reverse)

seq1  CTGTCTCAGAG-AGCTCATCCAACAGTTTGGGTTGCTGTGTGGGAGGCGG  49
      ||||||||||| ||||||| |||||||| ||||   ||||||||| ||||
seq2  CTGTCTCAGAGAAGCTCAT-CAACAGTTGGGGTGCTTGTGTGGGAAGCGG  49

seq1  AGGGCAGAGGCTTGCCTGTTCCACCAGAGCAGCCTGTAACGCAGTCCATC  99
      | |||||||   ||| |||||||||||||||| |||||||||||||||||
seq2  AAGGCAGAG--CTGCTTGTTCCACCAGAGCAG-CTGTAACGCAGTCCATC  96

seq1  TGCTGCTTTGTTTTCATTTTTGTGAGTTTGTGAGA--CAGAAATCTCCCG  147
      |||||||||||||   |||||||||||||||||||   | ||||||||||
seq2  TGCTGCTTTGTTTCATTTTTTGTGAGTTTGTGAGAACAAAAAATCTCCCG  146

seq1  TAATCCAGGCTGGCCTTGTACTCAACATGTAACTGAGGACTGGATCTCCT  197
      |||||   ||||||| ||||||||||||||||||||||||||||||||||
seq2  TAATC--AGCTGGCC-TGTACTCAACATGTAACTGAGGACTGGATCTCCT  193

seq1  GTACCCCATGCTAGCCCATGCTAGCCTTGGACTTCTGATCCTCCTGCCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCCATGCTAGCCCATGCTAGCCTTGGACTTCTGATCCTCCTGCCTC  243

seq1  CGCCTCTGTAGCTCTGGGATGACAGGTATGCACCACCACAAAGGCCCACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCTGTAGCTCTGGGATGACAGGTATGCACCACCACAAAGGCCCACA  293

seq1  CATTCAGCGCTAGGTACAGGGATGTCCCATGTTCTCTTATGTTAAGGTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGCGCTAGGTACAGGGATGTCCCATGTTCTCTTATGTTAAGGTTA  343

seq1  TGTAGGGCTGAGGAAATGTGACTGAAAGGACAATTCTGGGGCAGACTTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGCTGAGGAAATGTGACTGAAAGGACAATTCTGGGGCAGACTTTC  393

seq1  CTAAAATAAGACCACCAGGATTGACCCTCAGGGCAGAAGCTGCCCTTCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAAGACCACCAGGATTGACCCTCAGGGCAGAAGCTGCCCTTCAG  443

seq1  TTTTGGAGTGTGAAAAGAAACACTAGACTCGGGCCAAAGCTGGACAATGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGTGTGAAAAGAAACACTAGACTCGGGCCAAAGCTGGACAATGT  493

seq1  GGGTATACATCCAAGCAGTGATGGCCAGCCTCCTGCTGAGTGCAGGTCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATACATCCAAGCAGTGATGGCCAGCCTCCTGCTGAGTGCAGGTCAG  543

seq1  ATCACTCTGAATTCATAAGACACTAGAATAATATGCCAGGTAGGAAGAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTGAATTCATAAGACACTAGAATAATATGCCAGGTAGGAAGAGA  593

seq1  TTTCTAATAGTTTTTAGATTCTTTTGAACATCTTGAAGTCAATTTCCCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATAGTTTTTAGATTCTTTTGAACATCTTGAAGTCAATTTCCCAG  643

seq1  ACTTGATGAACCACTGTAAGAGTTGTTATCTCCTGGGAGACAGGCAGAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATGAACCACTGTAAGAGTTGTTATCTCCTGGGAGACAGGCAGAGT  693

seq1  CTCCCAGTATCTCCAATACTTCCTTGAGAGGCGGCTTTCCACCCTATTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTATCTCCAATACTTCCTTGAGAGGCGGCTTTCCACCCTATTTC  743

seq1  TGGATGGACGCTGTCAGGTTCCCGATCAAGAGGAGCAAGCCCAGCTCCCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGACGCTGTCAGGTTCCCGATCAAGAGGAGCAAGCCCAGCTCCCG  793

seq1  CTCCCCAATTTTCTGAGGGCAATTCTGTCGAAGGAGCCCTGGGAAGGGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAATTTTCTGAGGGCAATTCTGTCGAAGGAGCCCTGGGAAGGGGA  843

seq1  CTGGGAGTCGTGGGTGGTCACCGCGGACACACTGGGTATGATGGGAAGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTCGTGGGTGGTCACCGCGGACACACTGGGTATGATGGGAAGCA  893

seq1  TTTGTGGAGAAGGTAGTCAGTAGGGAGGCAACATCTGACAGCTTTTACCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGAGAAGGTAGTCAGTAGGGAGGCAACATCTGACAGCTTTTACCC  943

seq1  ACATGTGCACTGCTGGACAGTTAATGTCATGCAGACAGATTAATTTTGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCACTGCTGGACAGTTAATGTCATGCAGACAGATTAATTTTGAC  993

seq1  AGACATCTTTGGGATTCCATGAAAACCAAGGAGATGAGGTGAGCTGGCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTTTGGGATTCCATGAAAACCAAGGAGATGAGGTGAGCTGGCTG  1043

seq1  GGTGGGTTTGGAATTTGTATGCTGATGAGTGTTTTGCCTGTATGCATGTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTTTGGAATTTGTATGCTGATGAGTGTTTTGCCTGTATGCATGTC  1093

seq1  TGTGCACCATGTGTCTGGTGCCTGCACAGGTCAGAAGCCGGTGCTGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCATGTGTCTGGTGCCTGCACAGGTCAGAAGCCGGTGCTGAATT  1143

seq1  C  1148
      |
seq2  C  1144

seq1: chr6_37916589_37916859
seq2: B6Ng01-327F20.g_74_344

seq1  ACTCTGTAGACCAGGATGGCCTCAAACTTAGAGACCTACCTGCCGCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGATGGCCTCAAACTTAGAGACCTACCTGCCGCTGCC  50

seq1  TCCCAAATGCTGGGATTAAAAGTGTGAGCCAAAGGCTCACAGTCACACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATGCTGGGATTAAAAGTGTGAGCCAAAGGCTCACAGTCACACTC  100

seq1  AGTAGAAGCATCAAATATACAATAGGGGGCACCAATATTTGATAGATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGCATCAAATATACAATAGGGGGCACCAATATTTGATAGATTTC  150

seq1  TATAGCTTGTGCCCTGGGGCTGCCCTGTTGAAGTTCCCTGAATGGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTTGTGCCCTGGGGCTGCCCTGTTGAAGTTCCCTGAATGGGCTTT  200

seq1  CAATCTGTCTTTCTCATTTCAAATAAGCGGATGTTGTGGAGTTGGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGTCTTTCTCATTTCAAATAAGCGGATGTTGTGGAGTTGGGAAGA  250

seq1  GATCATTTGGGGGAAGGGGAA  271
      |||||||||||||||||||||
seq2  GATCATTTGGGGGAAGGGGAA  271