BAC Information

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BAC

Clone NameB6Ng01-328P13
Chromosome6 (Build37)
Map Location 116,438,376 - 116,552,489
singlet/doubletdoublet
Overlap geneOlfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215
Upstream genePparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432
Downstream geneZfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328P13.bB6Ng01-328P13.g
ACCGA116082GA116083
length1,228425
definitionB6Ng01-328P13.b B6Ng01-328P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,438,376 - 116,439,363)(116,552,059 - 116,552,489)
sequence
gaattccacaaaattaaaaacaaacaacaacaacaacttcagggcaaagg
aaacaatgagaagggatagcctatacaataaaagaaaatatgtttttaac
tgtatctctatagcaaagtaatatctaggaaatatagaagactcaaatta
ctaaatactactaaaccaaacaactaaatggatgggctaatgaacaatca
gttctgaaaagatagcatacaaaggaccaataaacatgacaaaatactac
attttcttatctatcagagaaatgcaagtcaaaactacattgatatataa
tctcactgtagtcagaatggccaccactaaaaccataaatagcagtaagt
gctagagaagacagagggtaaggaaaacactaatgcattgttcgtaggaa
tattagtccaaagactacaggaatcagtgtggaagttcctttaaaaaatc
catcataagaaccatccataacaggcctgggtatattgttgaagaactgt
aagtcaatgaaccatatgaatatttatacaattatgtctatgactgtact
agttgtaatagctattattgagtaagcctaggtttccatcaacagataaa
tggataaagaaaatgtggcatatatagacaatgaagttttattcaatcat
taagaatggaattattcaattttaaggaaagtggataaaactgaccatca
ttatattgagcaaatatattcagatcgagaaaacaaaataccacatttct
aggtgtgaatgtattattccgagtaactgagcctggatcttccctgacct
caatcctctgagctgggacaggggagatgtcctggcatctcccactgggg
cttatattctgttccccacatttggcttgaagcccagatggcaagtatgt
gtccacccacgacagccaaatccccagcaaagagggatttaatttaattg
ctccttctgggtccatttaaggaaaggatatgaacaccgctcctgtgtgt
ttcccatggacagggacaaattttactaaagatgagcctaacatcttggc
atagaagcttaaacaggaagacaaaaatctcatctgctgctcagatctca
gtccaccatgttcccactgtgctgaacgagagatcatcatgcatcgcatt
tgctgccacagggggaagtgatcagtaatgacgaaatttcaagggcctgt
tggtttcatggggctgaacataacaaca
tctgagtcctatattcaaggcctttggtgtttccagcaacatgaactcac
cttcaacttttgagaggcaaccaagggcaagagcaacagccaatagtgct
tggtaaatcttctaaattcccatggctatagcactatatttaaacctatg
gatgggaaatttccccactctggattacgctgtagtgcaaaaagaattcc
tggctctgtgttgcacagctgattcatgccatggctccgtgttgcacagc
tgattcatgccatggctccatgttgcacagctgattcatgccattttgtt
gttgctttatggagttaaggaacatgactgtaaaaaatattcccatgact
gacaatttgaaaggtttctaatgccaactagaagtttttggaggatatat
gtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_116438376_116439363
seq2: B6Ng01-328P13.b_301_1276

seq1  TTTCTTATCTATCAGAGAAATGCAAGTCAAAACTACATTGATATATAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATCTATCAGAGAAATGCAAGTCAAAACTACATTGATATATAATC  50

seq1  TCACTGTAGTCAGAATGGCCACCACTAAAACCATAAATAGCAGTAAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTAGTCAGAATGGCCACCACTAAAACCATAAATAGCAGTAAGTGC  100

seq1  TAGAGAAGACAGAGGGTAAGGAAAACACTAATGCATTGTTCGTAGGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGACAGAGGGTAAGGAAAACACTAATGCATTGTTCGTAGGAATA  150

seq1  TTAGTCCAAAGACTACAGGAATCAGTGTGGAAGTTCCTTTAAAAAATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCAAAGACTACAGGAATCAGTGTGGAAGTTCCTTTAAAAAATCCA  200

seq1  TCATAAGAACCATCCATAACAGGCCTGGGTATATTGTTGAAGAACTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGAACCATCCATAACAGGCCTGGGTATATTGTTGAAGAACTGTAA  250

seq1  GTCAATGAACCATATGAATATTTATACAATTATGTCTATGACTGTACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGAACCATATGAATATTTATACAATTATGTCTATGACTGTACTAG  300

seq1  TTGTAATAGCTATTATTGAGTAAGCCTAGGTTTCCATCAACAGATAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATAGCTATTATTGAGTAAGCCTAGGTTTCCATCAACAGATAAATG  350

seq1  GATAAAGAAAATGTGGCATATATAGACAATGAAGTTTTATTCAATCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGAAAATGTGGCATATATAGACAATGAAGTTTTATTCAATCATTA  400

seq1  AGAATGGAATTATTCAATTTTAAGGAAAGTGGATAAAACTGACCATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAATTATTCAATTTTAAGGAAAGTGGATAAAACTGACCATCATT  450

seq1  ATATTGAGCAAATATATTCAGATCGAGAAAACAAAATACCACATTTCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGCAAATATATTCAGATCGAGAAAACAAAATACCACATTTCTAG  500

seq1  GTGTGAATGTATTATTCCGAGTAACTGAGCCTGGATCTTCCCTGACCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAATGTATTATTCCGAGTAACTGAGCCTGGATCTTCCCTGACCTCA  550

seq1  ATCCTCTGAGCTGGGACAGGGGAGATGTCCTGGCATCTCCCACTGGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGAGCTGGGACAGGGGAGATGTCCTGGCATCTCCCACTGGGGCT  600

seq1  TATATTCTGTTCCCCACATTTGGCTTGAAGCCCAGATGGCAAGTATGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTGTTCCCCACATTTGGCTTGAAGCCCAGATGGCAAGTATGTGT  650

seq1  CCACCCACGACAGCCAAATCCCCAGCAAAGAGGGATTTAATTTAATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACGACAGCCAAATCCCCAGCAAAGAGGGATTTAATTTAATTGCT  700

seq1  CCTTCTGGGTCCATTTAAAGGAAAGGATATGAACACCGCTCCTGTGTGTT  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTTCTGGGTCCATTT-AAGGAAAGGATATGAACACCGCTCCTGTGTGTT  749

seq1  TCCCATGGACAGGGACAAATTTTACTAAAGATGAGCCTAAACATCTTGGC  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCCCATGGACAGGGACAAATTTTACTAAAGATGAGCCT-AACATCTTGGC  798

seq1  AATAGAAGCTTAAACAGGAAGACAAAAATCTTCATCTGCCTGCTCAGGAT  850
       ||||||||||||||||||||||||||||| ||||||| ||||||| |||
seq2  -ATAGAAGCTTAAACAGGAAGACAAAAATC-TCATCTG-CTGCTCA-GAT  844

seq1  CTCAGTTCCACCATGTCCCCAACTGTGGCTGACAGAGAGAATTCATCCAT  900
      ||||| |||||||||| ||| ||||| |||||  ||||||  |||| |||
seq2  CTCAG-TCCACCATGTTCCC-ACTGT-GCTGAACGAGAGA--TCAT-CAT  888

seq1  GCATCGCATTTGCTGCACAAGGGGGAAGTTGATCAAGGTAGTGACGAGTA  950
      ||||||||||||||||   ||||||||| ||||||  ||| ||||||  |
seq2  GCATCGCATTTGCTGCCACAGGGGGAAG-TGATCA--GTAATGACGA-AA  934

seq1  TTTCAAGGG-CTGTTTGTTCCATGGGG-TG-ACATAA-AACA  988
      ||||||||| ||||| ||| ||||||| || |||||| ||||
seq2  TTTCAAGGGCCTGTTGGTTTCATGGGGCTGAACATAACAACA  976

seq1: chr6_116552059_116552489
seq2: B6Ng01-328P13.g_65_495 (reverse)

seq1  CACACACACACACACACACACACACATATATCCTCCAAAAACTTCTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACATATATCCTCCAAAAACTTCTAGTT  50

seq1  GGCATTAGAAACCTTTCAAATTGTCAGTCATGGGAATATTTTTTACAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGAAACCTTTCAAATTGTCAGTCATGGGAATATTTTTTACAGTC  100

seq1  ATGTTCCTTAACTCCATAAAGCAACAACAAAATGGCATGAATCAGCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTTAACTCCATAAAGCAACAACAAAATGGCATGAATCAGCTGTG  150

seq1  CAACATGGAGCCATGGCATGAATCAGCTGTGCAACACGGAGCCATGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGAGCCATGGCATGAATCAGCTGTGCAACACGGAGCCATGGCAT  200

seq1  GAATCAGCTGTGCAACACAGAGCCAGGAATTCTTTTTGCACTACAGCGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGCTGTGCAACACAGAGCCAGGAATTCTTTTTGCACTACAGCGTA  250

seq1  ATCCAGAGTGGGGAAATTTCCCATCCATAGGTTTAAATATAGTGCTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGTGGGGAAATTTCCCATCCATAGGTTTAAATATAGTGCTATAG  300

seq1  CCATGGGAATTTAGAAGATTTACCAAGCACTATTGGCTGTTGCTCTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGAATTTAGAAGATTTACCAAGCACTATTGGCTGTTGCTCTTGCC  350

seq1  CTTGGTTGCCTCTCAAAAGTTGAAGGTGAGTTCATGTTGCTGGAAACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTGCCTCTCAAAAGTTGAAGGTGAGTTCATGTTGCTGGAAACACC  400

seq1  AAAGGCCTTGAATATAGGACTCAGAGAATTC  431
      |||||||||||||||||||||||||||||||
seq2  AAAGGCCTTGAATATAGGACTCAGAGAATTC  431