BAC Information

Click to search

BAC

Clone NameB6Ng01-329D13
Chromosome6 (Build37)16 (Build37)
Map Location 53,731,190 - 53,732,29796,349,361 - 96,350,170
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneJazf1, LOC666259, LOC666516, D430007I03, Creb5, LOC384386
Downstream gene1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329D13.bB6Ng01-329D13.g
ACCGA116251GA116252
length1,133865
definitionB6Ng01-329D13.b B6Ng01-329D13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,731,190 - 53,732,297)(96,349,361 - 96,350,170)
sequence
gaattctgttttggggtggggctgggggtggggggggaaggcaagaatga
tttaactttactggtagcttcgggtctcaacaaggctattatgtgcactt
gacaactctcagagacccagaaagggcttgtattttttttttccttacca
cattaaatttgggttaaatatgtaaatacacacaatggccaccagagggc
gacaacctctcagcatgattgagtagaagtcctctagccctgttgacaac
ggcttgattcctgccttgaatgtgtgcattgactggtattttaaataagt
aaataaatccaacataaatgtcaaaagagacatgaaggtaaatgccttaa
atggttttctaaacaaagagttgtagaaaccacagtatagtcagatgaca
gataagagataggtaggcagatttatcaattgactgactcagggtcaggg
ccttgcatgtagcccagaatggccttcaattcacaatgtctctactccct
caagcacgaaccaagattacaggcttgtaccaccatgacttgttgttagt
tttgtggttattcacagcccatttctttctaaaatataaattaaaagaca
gagccccactctttgctgggatggtctcccaggccttgctctgaaagccc
attccaccacagtgcctctgctcagaattgctttcttgcttccagcatag
gcagacaacctaagtctagcttttaattttatctcttattttttgagaat
ttcaagtgtatgatgcagcagatgacgtcaccacacactttggctataaa
ggacatagagaaatcaatctcacactaactggagaacttcctccttgctg
gctcgttttcacaagtgcctgtggtctgtgcaggctcctggtgggaaaaa
ataaagatctttctcagcgctagacctcgcatccttcatgctgagctgcc
aggcaatatctgcccacttctgccatagtggcatggctgttttcggtaat
aagccactttgatgagtttgactctgtctgttggaggaattgtcatgcca
gtactagacctggtcaagccctctgtctgggagagcatatgctattttta
ctgatgatatgctgtaaattgataagtctgaat
gaattccctgtcctaaatacaagttttatggtaggcaaagacatatatga
taattcttacaattgagcagcgttaataccgctgcgggtgggactcttgt
acccagcccgctatctgcattcttgaggtatactcaatattaactgcctt
ccataaaccaaaggtgcaatctggaagtcggagctagacccgacaccgct
gcacgaaggactgggtctgtaaagggccgatgtgattcctgcacacagtt
gaacacaggacggaggggtccatgcattggggagggcaagagcccgagac
atctgcaagacctaaaacagacatagttacctaaaaataggctagtaaag
gcgcgtaggacaccctgagtctgcgcgaccggtccgcgcgcgcctgcgca
ctgctggctgcgcctgtgccctcccgggcgaatggcaaatcacgcctagg
cactgctgaacccgaggggtccgcgggtggactccgcgggcgggcgcctg
gggtccggagcattgtgggaaagcgatgctgaggccacgtgacacgcccc
cacttatcagcgcgcaggccgcacttttgctgtcggcttcaaacaaacta
cctagcggggtcgggcgactccggcccgcccctcggccggggtcgcgtcc
gcaggggtggggggccagggggcggggcgatgcggcggagtgacagctcg
ccgtgcctattctggagcaagggctggggcgctggcgcgcgcggtgggcc
tagacagccaatggaggctgggggcggcccggctggcggggaggcgcggg
gggagaggggatatgatctaattagatcgtgatccagggctgcctgaaga
acagtggtgtgctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_53731190_53732297
seq2: B6Ng01-329D13.b_79_1175

seq1  GAAGGCAAGAATGATTTAACTTTACTGGTAGCTTCGGGTCTCAACAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAGAATGATTTAACTTTACTGGTAGCTTCGGGTCTCAACAAGGC  50

seq1  TATTATGTGCACTTGACAACTCTCAGAGACCCAGAAAGGGCTTGTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGTGCACTTGACAACTCTCAGAGACCCAGAAAGGGCTTGTATTTT  100

seq1  TTTTTTCCTTACCACATTAAATTTGGGTTAAATATGTAAATACACACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTTACCACATTAAATTTGGGTTAAATATGTAAATACACACAAT  150

seq1  GGCCACCAGAGGGCGACAACCTCTCAGCATGATTGAGTAGAAGTCCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCAGAGGGCGACAACCTCTCAGCATGATTGAGTAGAAGTCCTCTA  200

seq1  GCCCTGTTGACAACGGCTTGATTCCTGCCTTGAATGTGTGCATTGACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTGACAACGGCTTGATTCCTGCCTTGAATGTGTGCATTGACTGG  250

seq1  TATTTTAAATAAGTAAATAAATCCAACATAAATGTCAAAAGAGACATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAATAAGTAAATAAATCCAACATAAATGTCAAAAGAGACATGAA  300

seq1  GGTAAATGCCTTAAATGGTTTTCTAAACAAAGAGTTGTAGAAACCACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGCCTTAAATGGTTTTCTAAACAAAGAGTTGTAGAAACCACAGT  350

seq1  ATAGTCAGATGACAGATAAGAGATAGGTAGGCAGATTTATCAATTGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGATGACAGATAAGAGATAGGTAGGCAGATTTATCAATTGACTG  400

seq1  ACTCAGGGTCAGGGCCTTGCATGTAGCCCAGAATGGCCTTCAATTCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGTCAGGGCCTTGCATGTAGCCCAGAATGGCCTTCAATTCACAA  450

seq1  TGTCTCTACTCCCTCAAGCACGAACCAAGATTACAGGCTTGTACCACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTACTCCCTCAAGCACGAACCAAGATTACAGGCTTGTACCACCAT  500

seq1  GACTTGTTGTTAGTTTTGTGGTTATTCACAGCCCATTTCTTTCTAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTTGTTAGTTTTGTGGTTATTCACAGCCCATTTCTTTCTAAAATA  550

seq1  TAAATTAAAAGACAGAGCCCCACTCTTTGCTGGGATGGTCTCCCAGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAAAGACAGAGCCCCACTCTTTGCTGGGATGGTCTCCCAGGCCT  600

seq1  TGCTCTGAAAGCCCATTCCACCACAGTGCCTCTGCTCAGAATTGCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGAAAGCCCATTCCACCACAGTGCCTCTGCTCAGAATTGCTTTCT  650

seq1  TGCTTCCAGCATAGGCAGACAACCTAAGTCTAGCTTTTAATTTTATCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCAGCATAGGCAGACAACCTAAGTCTAGCTTTTAATTTTATCTCT  700

seq1  TATTTTTTGAGAATTTCAAGTGTATGATGCAGCAGATGACGTCACCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGAGAATTTCAAGTGTATGATGCAGCAGATGACGTCACCACAC  750

seq1  ACTTTGGCTAT-AAGGACATAGAGAAATCAATCTCACACTAACTGGAGAA  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCTATAAAGGACATAGAGAAATCAATCTCACACTAACTGGAGAA  800

seq1  CTTCCTCCTTGCTGGCTCGTTTTCACAAGTGCCTGTGGTCTGTGCAGGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTTGCTGGCTCGTTTTCACAAGTGCCTGTGGTCTGTGCAGGCT  850

seq1  CCTGGTGGGAAAAAATAAAGATC-TTCTCAGCGCTAGACCTCGCATCCTT  898
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTGGTGGGAAAAAATAAAGATCTTTCTCAGCGCTAGACCTCGCATCCTT  900

seq1  CCATGCTGAGCTGCCAGGCAATATCTGCCCACTTCTGCCATAGTGGCATG  948
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CATGCTGAGCTGCCAGGCAATATCTGCCCACTTCTGCCATAGTGGCATG  949

seq1  GCTGTTTTCGGGTAATAAGCCACTTTGATGAGTTTTGAACTCTGTTCTGT  998
      ||||||||| |||||||||||||||||||||||||   |||||| |||||
seq2  GCTGTTTTC-GGTAATAAGCCACTTTGATGAGTTT--GACTCTG-TCTGT  995

seq1  TGGAGGAAATGTCATGCCAGGTACTAGAACCTGGTCAAAAGCCCCTGGCC  1048
      |||||||| |||||||||| ||||||| ||||||||  ||||||   | |
seq2  TGGAGGAATTGTCATGCCA-GTACTAG-ACCTGGTC--AAGCCCTCTGTC  1041

seq1  TGGGAGAGCATATGCTATTTTTACTAAATGATTATGCTGTTAAATTGTAT  1098
      |||||||||||||||||||||||||  |||| ||||||| ||||||| ||
seq2  TGGGAGAGCATATGCTATTTTTACT-GATGA-TATGCTG-TAAATTG-AT  1087

seq1  AATTCTGAAT  1108
      || |||||||
seq2  AAGTCTGAAT  1097

seq1: chr16_96349361_96350170
seq2: B6Ng01-329D13.g_63_872 (reverse)

seq1  CCCCTCTCCCCCCGCGCCTCCCCGCCAGCCGGGCCGCCCCCAGCCTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCCCCCCGCGCCTCCCCGCCAGCCGGGCCGCCCCCAGCCTCCAT  50

seq1  TGGCTGTCTAGGCCCACCGCGCGCGCCAGCGCCCCAGCCCTTGCTCCCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGCTGTCTAGGCCCACCGCGCGCGCCAGCGCCCCAGCCCTTGCTCCAGA  100

seq1  ATAGGCACGGCGAGCTGTCACTCCGCCGCATCGCCCCGCCCCCTGGCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCACGGCGAGCTGTCACTCCGCCGCATCGCCCCGCCCCCTGGCCCC  150

seq1  CCACCCCTGCGGGCGCGACCCCGGCCGAGGGGCGGGCCGGAGTCGCCCGA  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTGCGGACGCGACCCCGGCCGAGGGGCGGGCCGGAGTCGCCCGA  200

seq1  CCCCGCTAGGTAGTTTGTTTGAAGCCGACAGCAAAAGTGCGGCCTGCGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCTAGGTAGTTTGTTTGAAGCCGACAGCAAAAGTGCGGCCTGCGCG  250

seq1  CTGATAAGTGGGGGCGTGTCACGTGGCCTCAGCATCGCTTTCCCACAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAGTGGGGGCGTGTCACGTGGCCTCAGCATCGCTTTCCCACAATG  300

seq1  CTCCGGACCCCAGGCGCCCGCCCGCGGAGTCCACCCGCGGACCCCTCGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGACCCCAGGCGCCCGCCCGCGGAGTCCACCCGCGGACCCCTCGGG  350

seq1  TTCAGCAGTGCCTAGGCGTGATTTGCCATTCGCCCGGGAGGGCACAGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGTGCCTAGGCGTGATTTGCCATTCGCCCGGGAGGGCACAGGCG  400

seq1  CAGCCAGCAGTGCGCAGGCGCGCGCGGGCCGGTCGCGCAGACTCAGGCTG  450
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  CAGCCAGCAGTGCGCAGGCGCGCGCGGACCGGTCGCGCAGACTCAGGGTG  450

seq1  TCCTACGCGCCTTTACTAGCCTATTTTTAGGTAACTATGTCTGTTTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACGCGCCTTTACTAGCCTATTTTTAGGTAACTATGTCTGTTTTAGG  500

seq1  TCTTGCAGCTGTCTCGGGCTCTTGCCCTCCCCACTGCATGGACCCCTCCG  550
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  TCTTGCAGATGTCTCGGGCTCTTGCCCTCCCCAATGCATGGACCCCTCCG  550

seq1  TCCTGTGTTCAACTGTGTGCAGGAATCACATCGGCCCTTTACAGACCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTCAACTGTGTGCAGGAATCACATCGGCCCTTTACAGACCCAG  600

seq1  TCCTTCGCGCAGCGGCGTCGGGTCTAGCTCCGACTTCCAGATTGCACCTT  650
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCTTCGTGCAGCGGTGTCGGGTCTAGCTCCGACTTCCAGATTGCACCTT  650

seq1  TTGTTTATGGAAGGCAGTTAATATTGAGTATACCTCAAGAATGCAGATAG  700
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATGGAAGGCAGTTAATATTGAGTATACCTCAAGAATGCAGATAG  700

seq1  CGGGCTGGGTACAAGAGTCCCACCCGCAGCCGTATTACTGCTGCTCAATT  750
      |||||||||||||||||||||||||||||| ||||||  |||||||||||
seq2  CGGGCTGGGTACAAGAGTCCCACCCGCAGCGGTATTAACGCTGCTCAATT  750

seq1  GTAAGAATTATCATATATGTCTTTGCCTACCATAAAACTTGTATTTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATTATCATATATGTCTTTGCCTACCATAAAACTTGTATTTAGGA  800

seq1  CAGGGAATTC  810
      ||||||||||
seq2  CAGGGAATTC  810