BAC Information

Click to search

BAC

Clone NameB6Ng01-330F14
Chromosome4 (Build37)6 (Build37)
Map Location 57,271,700 - 57,271,77164,547,404 - 64,548,515
singlet/doubletsingletsinglet
Overlap genePtpn3
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b
Downstream geneLOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330F14.bB6Ng01-330F14.g
ACCGA117051GA117052
length9311,113
definitionB6Ng01-330F14.b B6Ng01-330F14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,271,700 - 57,271,771)(64,547,404 - 64,548,515)
sequence
gaattctctactaaaaccatctggtcctgggatttttttttttagttggg
agacttttaatgactacttctaattatttatgggctatgggactgtttaa
atggtttatctaatcttgatttaactttggcacctagtatctgtctagaa
acttgtccatttaatccagattttccagttgtgttgaatataggcttttg
tagtaggacctgatgaatttttgaactttctgttgttatgtctccctttt
catttctgattttgttaatttggatactgtctctgtgttctctgattatt
cttgtttattttttcaaagaaccagctcctggtttggttgactctttgta
tagttctttttgtttctacttggttgatttcagccttgagtttgataatt
ttctgctatctactcctcttggctctattgcttctttttgttctagagct
ttcagatgtgctgtcaaactgctagtgtatgctctctccagtttctttgt
ggaggcactcagagctgagttttcatattagcacaactttcattgtatcc
cataagattgggtttgttgtgccttcatttttattaaattttaaaaactc
ttaaatttctttatttcttcttgaccaagttattactgagtagggcattg
ttcacctttcatgtatatgggagctttctgttgtttttgttgctattgaa
gaccagccttagtccatggtgatctgataggatgcatggaattatttgtg
atttctttattgtttccatttttagatcttggatggttttattcaattcc
ttcacctgtttggttgtggtttcctgaaattctttaagggattggggggg
tggggggtatacccgacgatgcagaatgtcgggcggggggagagatcact
ctgtcattaatcaaaccagtctcatgttcct
gaattctgtactctgaaactagatttctgccctacagctgttccgaggct
ttctagatctcactgcttattcaacgagctggagtgtgtcaagcaaattc
gtaacacagtgggagtgagacatatttcagcagcaagaaatgtaaaacaa
ataaataagaagataaacagactcaaccatactcctttttaattatccaa
aggttgcttaaggctatacattcttaagattccctggtgtaggtctgtat
cagtggttctcaaccttccgagtgctgtgaccctttaatatacttcttca
tgttgtggcgaaccccaaccatacaattattttcatttctagttcataac
tgtaatttcgctattgaatggtaatataaatattttgggtaatagaggtt
tgccataggggttgtgacccacaggttgagaagtacttctctatattccg
ataactgtcacttctctttctgagtatgttaatattgtgagtgactctaa
tatatggcatatttttcctggaatttcctaaataggcaagtggaaagatt
ttcgatatgaatcataccatgtctgcttacattatggtgttgtataattt
acatatatatatataaagcctgtgcagaaattttaatactttttcactaa
taattgcttaagcaacatcagtctcactacaaagaatttactcttggaca
tttctatttattcatgtaactatcacttttcaaatgactttagagaatct
ctgcctaaggacagcccctgtaatttatgcatgacgtagctcacgtcaaa
gagagtagttcattcctcagtcagattctccagggtgtttccaagggttt
gaatatcatttaaaactgagataaatcaggaggaaaatgtttatgcagtg
cctctggtctttcctcacaccgagagcaccatgcccttaaggcaacttta
tcaactgttcacacatgatctaaggaaatgagattgccttgctgcttaag
caaatgagccgtgaaagcagtttggtattctgtgacagatgatctgacag
taccatgacgcctactgcttgagaatgggggcaaggaagaatgggttggg
aaagggggtattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_57271700_57271771
seq2: B6Ng01-330F14.b_910_978

seq1  CCGACGATGCAGAAGTGCCGGGGCGGGGGAGAGATCACTCTGTCAATTTA  50
      |||||||||||||| || ||||  |||||||||||||||||||||  |||
seq2  CCGACGATGCAGAA-TGTCGGGCGGGGGGAGAGATCACTCTGTCA--TTA  47

seq1  AACAAACCAGTCTCATGTTCCT  72
      | ||||||||||||||||||||
seq2  ATCAAACCAGTCTCATGTTCCT  69

seq1: chr6_64547404_64548515
seq2: B6Ng01-330F14.g_68_1180

seq1  GAATTCTGTACTCTGAAACTAGATTTCTGCCCTACAGCTGTTCCGAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACTCTGAAACTAGATTTCTGCCCTACAGCTGTTCCGAGGCT  50

seq1  TTCTAGATCTCACTGCTTATTCAACGAGCTGGAGTGTGTCAAGCAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATCTCACTGCTTATTCAACGAGCTGGAGTGTGTCAAGCAAATTC  100

seq1  GTAACACAGTGGGAGTGAGACATATTTCAGCAGCAAGAAATGTAAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACAGTGGGAGTGAGACATATTTCAGCAGCAAGAAATGTAAAACAA  150

seq1  ATAAATAAGAAGATAAACAGACTCAACCATACTCCTTTTTAATTATCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAGAAGATAAACAGACTCAACCATACTCCTTTTTAATTATCCAA  200

seq1  AGGTTGCTTAAGGCTATACATTCTTAAGATTCCCTGGTGTAGGTCTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTTAAGGCTATACATTCTTAAGATTCCCTGGTGTAGGTCTGTAT  250

seq1  CAGTGGTTCTCAACCTTCCGAGTGCTGTGACCCTTTAATATACTTCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTCTCAACCTTCCGAGTGCTGTGACCCTTTAATATACTTCTTCA  300

seq1  TGTTGTGGCGAACCCCAACCATACAATTATTTTCATTTCTAGTTCATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGCGAACCCCAACCATACAATTATTTTCATTTCTAGTTCATAAC  350

seq1  TGTAATTTCGCTATTGAATGGTAATATAAATATTTTGGGTAATAGAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTCGCTATTGAATGGTAATATAAATATTTTGGGTAATAGAGGTT  400

seq1  TGCCATAGGGGTTGTGACCCACAGGTTGAGAAGTACTTCTCTATATTCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGGGGTTGTGACCCACAGGTTGAGAAGTACTTCTCTATATTCCG  450

seq1  ATAACTGTCACTTCTCTTTCTGAGTATGTTAATATTGTGAGTGACTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTCACTTCTCTTTCTGAGTATGTTAATATTGTGAGTGACTCTAA  500

seq1  TATATGGCATATTTTTCCTGGAATTTCCTAAATAGGCAAGTGGAAAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGCATATTTTTCCTGGAATTTCCTAAATAGGCAAGTGGAAAGATT  550

seq1  TTCGATATGAATCATACCATGTCTGCTTACATTATGGTGTTGTATAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATATGAATCATACCATGTCTGCTTACATTATGGTGTTGTATAATTT  600

seq1  ACATATATATATATAAAGCCTGTGCAGAAATTTTAATACTTTTTCACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATATAAAGCCTGTGCAGAAATTTTAATACTTTTTCACTAA  650

seq1  TAATTGCTTAAGCAACATCAGTCTCACTACAAAGAATTTACTCTTGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTTAAGCAACATCAGTCTCACTACAAAGAATTTACTCTTGGACA  700

seq1  TTTCTATTTATTCATGTAACTATCACTTTTCAAATGACTTTAGAGAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTATTCATGTAACTATCACTTTTCAAATGACTTTAGAGAATCT  750

seq1  CTGCCTAAGGACAGCCCCTGTAATTTATGCATGACGTAGCTCAGGTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGCCTAAGGACAGCCCCTGTAATTTATGCATGACGTAGCTCACGTCAAA  800

seq1  GAGAGTAGTTCATTCCTCAGTCAGATTCTCCAGGGTGTTTCCAAGGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAGTTCATTCCTCAGTCAGATTCTCCAGGGTGTTTCCAAGGGTTT  850

seq1  GAATATCATTTAAAACTGAGATAAATCAGGAAGGAAAATGTTTATGCAGT  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATATCATTTAAAACTGAGATAAATCAGG-AGGAAAATGTTTATGCAGT  899

seq1  GCCTCTGGTCTTTCCTCACACCGAGAGCACCATGCCCTTAAGGCAACTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGTCTTTCCTCACACCGAGAGCACCATGCCCTTAAGGCAACTTT  949

seq1  ATCAACTGTTCAACACATGATCTAAGGAAATGAGATTGCCTTGCTGCTTA  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTGTTC-ACACATGATCTAAGGAAATGAGATTGCCTTGCTGCTTA  998

seq1  AGCAAATGAGCCGTGAAAGCAGTTTGGTATTCCTGTGGACAGATGATCTG  1050
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  AGCAAATGAGCCGTGAAAGCAGTTTGGTATT-CTGT-GACAGATGATCTG  1046

seq1  ACAGTACCATGACGCCTACTGCTTGAG-ATGGGGGC-AGGAAAGATGGGT  1098
      ||||||||||||||||||||||||||| |||||||| |||||  ||||||
seq2  ACAGTACCATGACGCCTACTGCTTGAGAATGGGGGCAAGGAAGAATGGGT  1096

seq1  TGG--AAGGGGG-ATTG  1112
      |||  ||||||| ||||
seq2  TGGGAAAGGGGGTATTG  1113