BAC Information

Click to search

BAC

Clone NameB6Ng01-331G22
Chromosome6 (Build37)
Map Location 110,295,560 - 110,454,123
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331G22.bB6Ng01-331G22.g
ACCGA117799GA117800
length1,1721,088
definitionB6Ng01-331G22.b B6Ng01-331G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,295,560 - 110,296,720)(110,453,049 - 110,454,123)
sequence
gaattccccaagattgggacttgagtaggtagggggtcagagaattttaa
aagacagctctgtgcagctatgggggagccctcatccctattgctaagaa
tggtcagggagaaataaccacaaccatgcatgtgacctctcacctagggt
ctagaaagaagctcggcaagttcatccgtttctacaagtgaactttggtg
gcactgtaatggaagggaaagaaggagctattgcttagtctccccctggg
aagaaattttcacagcataaatgatttgaacactggacattttcatcaga
tttttaaaaatacaaccaacactcatctgtaaatgtttttatgcataagg
tcatgtaaaattacattgttttagtttattaaacttttatttttagtaca
tataacttttatttccacatatttcatttctaagacaatttaattcaggc
ttcaaccactaaggtttcacataaataataaaccttctgaagatatgttc
tttcagtttttgttcaaaagtaaaagttttatgtactctggttctgaact
aagtttagaggaattcctggtagttgcttagtctatagaacttaaaaccg
tgctttcacccagaaaggtctctacttacttgttgtgaagtcatgctaat
gagaacctgtgggtgagagtagtgactttggccatatttgtttcttcagt
tatatacacaagtagaggtcactcaagaaagaaaccatctagatatgatg
gtttgtacttttttctttttttctgtttttgctagtttctctttaaaagt
ccccttaaaagattgttttatattttgctcagaaaaaaaagtgtttggtc
ttattgctagaaaataacacctggcctacaagagttgttgtttatttttt
gttctttcataatactatacccttcagaaaaaatattaaatcacatcctt
ataataatgtgatgaaaaacaaaaattaacagaaagtgctatgtaaacat
ccattgtccctaaaataataatgctcactctctaccaactccaaattttt
ctttgaaagtctctgcatattcatattgaatatctgttggaaatgagtta
ttcaaaatgccttcattaaatattctagtaaggtgtgcaattcaccctgt
gtgacaaattgtcagtgcaggt

gaattcatagcccattactgaaaggcagagacttgaaaattgtgcatgca
ttttctgtccacttatcaccagcaaaatgtgaataaactgatttccttaa
atattccagatgcattttcaatattctgcacactgactgatacatctttg
ctactgcagatttggggtggtgtggtgtagatcaagagccaaaataatct
ccaactatcatttagagtaatttatcaccctttactgtatctgaactcac
atcattttgactatcaagtaaaggcttttggagtgtatcaattttgtaga
cctgagatttcccaaccctgtcttaatttattttcctgttgatataataa
aatacccatatagctgtgtgtggtggcacacacttttaaacgcagcactt
gggaggcagaggcaggcaaattttggccagcctgatccacagcgtgagtt
ccaggacagccagggctacacagagaaaccctgggtcggaaaataaaata
aaataaaataaaataaaataaaataaaataaaataaaataaaataaaata
tataaaaatataaaaataataaaatataaaatataaaataaccagacaaa
tacaactgggtgtacaatttattttagcttatggttccagctcacactca
ttatagtagggaagtcagagtgttaggaataaaaagttaccagttatttt
aagtgcagtcagaagaggagagcagtgattgtgtacctgctaatgctccc
ctctacactgtcctgaatttcctgtctactgaatgatattactcacagta
gtcaagttttcctacctctgttaaggtcatatagcatgtctagacacaat
acaagtacaccaaaataatatattacttacagttcaaggcaaaacaaata
ggccataaaaattgacaaacatcatctagcacttcataaacccaaaagct
aagaatgttaccaaatagcatctaaaatctgaaacgtttttctctgcatt
gttatatcaacacctggaagtgcttatatgacccttgaatctttttttta
acatgggtttccactggttaaataaatcatatctattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110295560_110296720
seq2: B6Ng01-331G22.b_51_1222

seq1  GAATTCCCCAAGATTGGGACTTGAGTAGGTAGGGGGTCAGAGAATTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAAGATTGGGACTTGAGTAGGTAGGGGGTCAGAGAATTTTAA  50

seq1  AAGACAGCTCTGTGCAGCTATGGGGGAGCCCTCATCCCTATTGCTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCTCTGTGCAGCTATGGGGGAGCCCTCATCCCTATTGCTAAGAA  100

seq1  TGGTCAGGGAGAAATAACCACAACCATGCATGTGACCTCTCACCTAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGGAGAAATAACCACAACCATGCATGTGACCTCTCACCTAGGGT  150

seq1  CTAGAAAGAAGCTCGGCAAGTTCATCCGTTTCTACAAGTGAACTTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAGAAGCTCGGCAAGTTCATCCGTTTCTACAAGTGAACTTTGGTG  200

seq1  GCACTGTAATGGAAGGGAAAGAAGGAGCTATTGCTTAGTCTCCCCCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTAATGGAAGGGAAAGAAGGAGCTATTGCTTAGTCTCCCCCTGGG  250

seq1  AAGAAATTTTCACAGCATAAATGATTTGAACACTGGACATTTTCATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTTTCACAGCATAAATGATTTGAACACTGGACATTTTCATCAGA  300

seq1  TTTTTAAAAATACAACCAACACTCATCTGTAAATGTTTTTATGCATAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATACAACCAACACTCATCTGTAAATGTTTTTATGCATAAGG  350

seq1  TCATGTAAAATTACATTGTTTTAGTTTATTAAACTTTTATTTTTAGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAAAATTACATTGTTTTAGTTTATTAAACTTTTATTTTTAGTACA  400

seq1  TATAACTTTTATTTCCACATATTTCATTTCTAAGACAATTTAATTCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTTTATTTCCACATATTTCATTTCTAAGACAATTTAATTCAGGC  450

seq1  TTCAACCACTAAGGTTTCACATAAATAATAAACCTTCTGAAGATATGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCACTAAGGTTTCACATAAATAATAAACCTTCTGAAGATATGTTC  500

seq1  TTTCAGTTTTTGTTCAAAAGTAAAAGTTTTATGTACTCTGGTTCTGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTTTTGTTCAAAAGTAAAAGTTTTATGTACTCTGGTTCTGAACT  550

seq1  AAGTTTAGAGGAATTCCTGGTAGTTGCTTAGTCTATAGAACTTAAAACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGAGGAATTCCTGGTAGTTGCTTAGTCTATAGAACTTAAAACCG  600

seq1  TGCTTTCACCCAGAAAGGTCTCTACTTACTTGTTGTGAAGTCATGCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCACCCAGAAAGGTCTCTACTTACTTGTTGTGAAGTCATGCTAAT  650

seq1  GAGAACCTGTGGGTGAGAGTAGTGACTTTGGCCATATTTGTTTCTTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTGTGGGTGAGAGTAGTGACTTTGGCCATATTTGTTTCTTCAGT  700

seq1  TATATACACAAGTAGAGGTCACTCAAGAAAGAAACCATCTAGATATGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACACAAGTAGAGGTCACTCAAGAAAGAAACCATCTAGATATGATG  750

seq1  GTTTGTACTTTTTTCTTTTTTTCTGTTTTTGCTAGTTTCTCTTTAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACTTTTTTCTTTTTTTCTGTTTTTGCTAGTTTCTCTTTAAAAGT  800

seq1  CCCCTTAAAAGATTGTTTTATATTTTGCTCAGAAAAAAAAGTGTTTGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTAAAAGATTGTTTTATATTTTGCTCAGAAAAAAAAGTGTTTGGTC  850

seq1  TTATTGCTAGAAAATAACACCTGGCCTACAAGAGTTGTTGTTTATTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTAGAAAATAACACCTGGCCTACAAGAGTTGTTGTTTATTTTTT  900

seq1  GTTCTTTCATAATACTATA-CCTTCAGAAAAAATATTAAATCACATCCTT  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTCTTTCATAATACTATACCCTTCAGAAAAAATATTAAATCACATCCTT  950

seq1  ATAATAATGTGATGAAAA--CAAAATTAACAGAAAGTGCTATGTAACCAT  997
      ||||||||||||||||||   ||||||||||||||||||||||||| |||
seq2  ATAATAATGTGATGAAAAACAAAAATTAACAGAAAGTGCTATGTAAACAT  1000

seq1  CCATTGTCCCTAAAATAATAATGCTCACTCTCTTACCAACTCC-AATTTT  1046
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  CCATTGTCCCTAAAATAATAATGCTCACTCTC-TACCAACTCCAAATTTT  1049

seq1  TCTTTGAAAGTCTCTGCATATTCATTAATGAATATCTGTTGG-AATGAGT  1095
      |||||||||||||||||||||||| || |||||||||||||| |||||||
seq2  TCTTTGAAAGTCTCTGCATATTCA-TATTGAATATCTGTTGGAAATGAGT  1098

seq1  ATATTCAAAATGC--TCATTAAATATTCATGTA--GTGTGC-ATTCACCC  1140
       ||||||||||||  |||||||||||||  |||  |||||| ||||||||
seq2  -TATTCAAAATGCCTTCATTAAATATTCTAGTAAGGTGTGCAATTCACCC  1147

seq1  --TGTGACAAAT--GCAATGCAGGT  1161
        ||||||||||   || |||||||
seq2  TGTGTGACAAATTGTCAGTGCAGGT  1172


seq1: chr6_110453049_110454123
seq2: B6Ng01-331G22.g_68_1155 (reverse)

seq1  AAATAGATATGA-TTATTTAACCAGTGGAAACCAATGT----AAAAAGAT  45
      |||||||||||| |||||||||||||||||||| ||||    ||||||||
seq2  AAATAGATATGATTTATTTAACCAGTGGAAACCCATGTTAAAAAAAAGAT  50

seq1  TCAA-GGTCATAT-AGCAC-TCCAGGTGTTGATA-AACAATGCAGAG-AA  90
      |||| |||||||| ||||| |||||||||||||| |||||||||||| ||
seq2  TCAAGGGTCATATAAGCACTTCCAGGTGTTGATATAACAATGCAGAGAAA  100

seq1  AACGTTTCAGATTTTAGATGCTATTTGGTAACATTCTTAGCTTTTGGGTT  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTCAGATTTTAGATGCTATTTGGTAACATTCTTAGCTTTTGGGTT  150

seq1  TATG-AGTGCT-GATGATGTTTGTC-ATTTTTATTGCCTATTTGTTTTGC  187
      |||| |||||| ||||||||||||| |||||||| |||||||||||||||
seq2  TATGAAGTGCTAGATGATGTTTGTCAATTTTTATGGCCTATTTGTTTTGC  200

seq1  CTTGAACTGTAAGTAATATATTATTTTGGTGTACTTGTATTGTGTCTAGA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTGTAAGTAATATATTATTTTGGTGTACTTGTATTGTGTCTAGA  250

seq1  CATGCTATATGACCTTAACAGAGGTAGGAAAACTTGACTACTGTGAGTAA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTATATGACCTTAACAGAGGTAGGAAAACTTGACTACTGTGAGTAA  300

seq1  TATCATTCAGTAGACAGGAAATTCAGGACAGTGTAGAGGGGAGCATTAGC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCAGTAGACAGGAAATTCAGGACAGTGTAGAGGGGAGCATTAGC  350

seq1  AGGTACACAATCACTGCTCTCCTCTTCTGACTGCACTTAAAATAACTGGT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACACAATCACTGCTCTCCTCTTCTGACTGCACTTAAAATAACTGGT  400

seq1  AACTTTTTATTCCTAACACTCTGACTTCCCTACTATAATGAGTGTGAGCT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTATTCCTAACACTCTGACTTCCCTACTATAATGAGTGTGAGCT  450

seq1  GGAACCATAAGCTAAAATAAATTGTACACCCAGTTGTATTTGTCTGGTTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCATAAGCTAAAATAAATTGTACACCCAGTTGTATTTGTCTGGTTA  500

seq1  TTTTATATTTTATATTTTATTATTTTTATATTTTTATATATTTTATTTTA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTTTATATTTTATTATTTTTATATTTTTATATATTTTATTTTA  550

seq1  TTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTC  600

seq1  CGACCCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACGCTGT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACGCTGT  650

seq1  GGATCAGGCTGGCCAAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGCGTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGGCTGGCCAAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGCGTT  700

seq1  TAAAAGTGTGTGCCACCACACACAGCTATATGGGTATTTTATTATATCAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGTGTGCCACCACACACAGCTATATGGGTATTTTATTATATCAA  750

seq1  CAGGAAAATAAATTAAGACAGGGTTGGGAAATCTCAGGTCTACAAAATTG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAATAAATTAAGACAGGGTTGGGAAATCTCAGGTCTACAAAATTG  800

seq1  ATACACTCCAAAAGCCTTTACTTGATAGTCAAAATGATGTGAGTTCAGAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTCCAAAAGCCTTTACTTGATAGTCAAAATGATGTGAGTTCAGAT  850

seq1  ACAGTAAAGGGTGATAAATTACTCTAAATGATAGTTGGAGATTATTTTGG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAGGGTGATAAATTACTCTAAATGATAGTTGGAGATTATTTTGG  900

seq1  CTCTTGATCTACACCACACCACCCCAAATCTGCAGTAGCAAAGATGTATC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGATCTACACCACACCACCCCAAATCTGCAGTAGCAAAGATGTATC  950

seq1  AGTCAGTGTGCAGAATATTGAAAATGCATCTGGAATATTTAAGGAAATCA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGTGCAGAATATTGAAAATGCATCTGGAATATTTAAGGAAATCA  1000

seq1  GTTTATTCACATTTTGCTGGTGATAAGTGGACAGAAAATGCATGCACAAT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCACATTTTGCTGGTGATAAGTGGACAGAAAATGCATGCACAAT  1050

seq1  TTTCAAGTCTCTGCCTTTCAGTAATGGGCTATGAATTC  1075
      ||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTCTCTGCCTTTCAGTAATGGGCTATGAATTC  1088


| Home | SequenceCutter | Blast | Download |