BAC Information

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BAC

Clone NameB6Ng01-331H12
Chromosome6 (Build37)
Map Location 108,030,157 - 108,198,392
singlet/doubletdoublet
Overlap geneSumf1, LOC100043718, Itpr1
Upstream genePpia-ps6_1128.1, Lrrn1, Setmar
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331H12.bB6Ng01-331H12.g
ACCGA117826GA117827
length1,003734
definitionB6Ng01-331H12.b B6Ng01-331H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,030,157 - 108,031,071)(108,197,659 - 108,198,392)
sequence
gaattcttccttccattgttagacaactgttgttgaactagagggagcac
agcttgtaagccattctaataaatcccctttatataaaaagatgatagac
aacagacagatagataatgaataggttctttctataagttctgttccttt
agagacccttgataaaaacagggctgctgattgctagagatatagtagca
tgtttggaaaggataataaaatattctggagctattcaggactattttgt
aatttgttgtgcttttttaaaggggagatttttttaaaattatacctcca
ctatgcttctttcagaaaaggagagaagaggggagggaagaggaggaacc
tcaaacctgaaaccctgaacatatctttaggccctagaaaaatgcttgtc
tacttgcctggtgttggtttttttgtctctgtttagatttatttattttc
tgtatatgagtgttttgtttacatggatgtctgtgtagcactgtgtatgc
ctagtgcccaaggaggtcagaagagggcactggatctcctggtactggag
tcacagatgtttgtgagccacaatgttgcttctgagacacgaatctgggt
cctctgcaagatcaagagcttatagcctacttccatccattcccccaagt
tcctttctgtttgcagaataagacacagctttgcctaatgttgtaagatg
cttgtggctagagccattatcaccatagatggatgctgcactgggatgca
agaggaatgtgaactgcaaaaatgtttgggttggaaagaaaagaatcacg
ttcattaatgcactaaatccttcccttcagcacaaacaccaccttaagtg
cctttcccttcctgttctcatttagaggtcaagaggtgttcacaaactac
acagtattactatgactgcctggaaacagatttttcaaactattatacag
ctcatattgctttacatgtgtttatgtgtgattattttattagatatttt
ctt

gaattcaagaacagagaagtaacattttgtctagtctcaattagaagcta
tgccagtgacaaaggccatgcccttacagaaccctcaggccaggggttta
agacaatctatagggcaaatggtgggaaaggacagggtcagccctcagga
ctctggcattcaggcgtgacatgacactggaccagttcctaacatctgtt
aacccaaatagcattaggtatgaaacagatgtgtcctgatctggggaggt
gctgcagagccagagagaaggcacatatgtagagcatcatctactctgcc
cccgtcccataggaaagtactctgccggctctcttccccttgcatatata
actgctgtggtgtgggaacagatgccttcccagagaattctggtaactct
tgtccctggagaataaatggcctgtagctgcatgtagaaggaaaccaata
aatgtttgtggagtaaatgataaccagcctaggatgggcaagtgactgtc
tatgagacagttactcaacttcttggagcctccatcttctcatctgcata
atgggaacataaagacctgccgcaaggaagtggattgcacagcaagatta
gaaagaagtcattcatcaggacaatgctttgtaccaactggatgatctat
cagtgtgataaatgtagtgggtcagtctctccagaaaaccctaaggctct
tttttgggttggttttgtttgtttgggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108030157_108031071
seq2: B6Ng01-331H12.b_52_965

seq1  GAATTCTTCCTTCCATTGTTAGACAACTGTTGTTGAACTAGAGGGAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTCCATTGTTAGACAACTGTTGTTGAACTAGAGGGAGCAC  50

seq1  AGCTTGTAAGCCATTCTAATAAATCCCCTTTATATAAAAAGATGATAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTAAGCCATTCTAATAAATCCCCTTTATATAAAAAGATGATAGAC  100

seq1  AACAGACAGATAGATAATGAATAGGTTCTTTCTATAAGTTCTGTTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGATAGATAATGAATAGGTTCTTTCTATAAGTTCTGTTCCTTT  150

seq1  AGAGACCCTTGATAAAAACAGGGCTGCTGATTGCTAGAGATATAGTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCTTGATAAAAACAGGGCTGCTGATTGCTAGAGATATAGTAGCA  200

seq1  TGTTTGGAAAGGATAATAAAATATTCTGGAGCTATTCAGGACTATTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGAAAGGATAATAAAATATTCTGGAGCTATTCAGGACTATTTTGT  250

seq1  AATTTGTTGTGCTTTTTTAAAGGGGAGATTTTTTTAAAATTATACCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTGTGCTTTTTTAAAGGGGAGATTTTTTTAAAATTATACCTCCA  300

seq1  CTATGCTTCTTTCAGAAAAGGAGAGAAGAGGGGAGGGAAGAGGAGGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTTCTTTCAGAAAAGGAGAGAAGAGGGGAGGGAAGAGGAGGAACC  350

seq1  TCAAACCTGAAACCCTGAACATATCTTTAGGCCCTAGAAAAATGCTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTGAAACCCTGAACATATCTTTAGGCCCTAGAAAAATGCTTGTC  400

seq1  TACTTGCCTGGTGTTGGTTTTTTTGTCTCTGTTTAGATTTATTTATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCTGGTGTTGGTTTTTTTGTCTCTGTTTAGATTTATTTATTTTC  450

seq1  TGTATATGAGTGTTTTGTTTACATGGATGTCTGTGTAGCACTGTGTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGAGTGTTTTGTTTACATGGATGTCTGTGTAGCACTGTGTATGC  500

seq1  CTAGTGCCCAAGGAGGTCAGAAGAGGGCACTGGATCTCCTGGTACTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCCCAAGGAGGTCAGAAGAGGGCACTGGATCTCCTGGTACTGGAG  550

seq1  TCACAGATGTTTGTGAGCCACAATGTTGCTTCTGAGACACGAATCTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATGTTTGTGAGCCACAATGTTGCTTCTGAGACACGAATCTGGGT  600

seq1  CCTCTGCAAGATCAAGAGCTTATAGCCTACTTCCATCCATTCCCCCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAAGATCAAGAGCTTATAGCCTACTTCCATCCATTCCCCCAAGT  650

seq1  TCCTTTCTGTTTGCAGAATAAGACACAGCTTTGCCTAATGTTGTAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTGTTTGCAGAATAAGACACAGCTTTGCCTAATGTTGTAAGATG  700

seq1  CTTGTGGCTAGAGCCATTATCACCATAGATGGATGCTGCACTGGGATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGCTAGAGCCATTATCACCATAGATGGATGCTGCACTGGGATGCA  750

seq1  AGAGGAATGTGAACTGCAAAAATGTTTGGGTTGGAAAGAAAAGAATCACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATGTGAACTGCAAAAATGTTTGGGTTGGAAAGAAAAGAATCACG  800

seq1  TTCATTAATGCACTAAATCCTTCCCTTCAGCACAAACACCACCTTAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAATGCACTAAATCCTTCCCTTCAGCACAAACACCACCTTAAGTG  850

seq1  CCTTTCCCTTCCTGTTCTCATTTAGAGGTCAAGAGGTGTTCACAAACTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCTTCCTGTTCTCATTTAGAGGTCAAGAGGTGTTCACAAACTAC  900

seq1  ACAGTATTTACTATG  915
      |||||| ||||||||
seq2  ACAGTA-TTACTATG  914


seq1: chr6_108197659_108198392
seq2: B6Ng01-331H12.g_68_801 (reverse)

seq1  CCCCACCCCCAAACAAACAAAACCAACCCAAAAAAGAGCCTTAGGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCAAACAAACAAAACCAACCCAAAAAAGAGCCTTAGGGTTTT  50

seq1  CTGGAGAGACTGACCCACTACATTTATCACACTGATAGATCATCCAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGACTGACCCACTACATTTATCACACTGATAGATCATCCAGTTG  100

seq1  GTACAAAGCATTGTCCTGATGAATGACTTCTTTCTAATCTTGCTGTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGCATTGTCCTGATGAATGACTTCTTTCTAATCTTGCTGTGCAA  150

seq1  TCCACTTCCTTGCGGCAGGTCTTTATGTTCCCATTATGCAGATGAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCCTTGCGGCAGGTCTTTATGTTCCCATTATGCAGATGAGAAGA  200

seq1  TGGAGGCTCCAAGAAGTTGAGTAACTGTCTCATAGACAGTCACTTGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTCCAAGAAGTTGAGTAACTGTCTCATAGACAGTCACTTGCCCA  250

seq1  TCCTAGGCTGGTTATCATTTACTCCACAAACATTTATTGGTTTCCTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGCTGGTTATCATTTACTCCACAAACATTTATTGGTTTCCTTCTA  300

seq1  CATGCAGCTACAGGCCATTTATTCTCCAGGGACAAGAGTTACCAGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGCTACAGGCCATTTATTCTCCAGGGACAAGAGTTACCAGAATTC  350

seq1  TCTGGGAAGGCATCTGTTCCCACACCACAGCAGTTATATATGCAAGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAGGCATCTGTTCCCACACCACAGCAGTTATATATGCAAGGGGA  400

seq1  AGAGAGCCGGCAGAGTACTTTCCTATGGGACGGGGGCAGAGTAGATGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCGGCAGAGTACTTTCCTATGGGACGGGGGCAGAGTAGATGATG  450

seq1  CTCTACATATGTGCCTTCTCTCTGGCTCTGCAGCACCTCCCCAGATCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATATGTGCCTTCTCTCTGGCTCTGCAGCACCTCCCCAGATCAGG  500

seq1  ACACATCTGTTTCATACCTAATGCTATTTGGGTTAACAGATGTTAGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTGTTTCATACCTAATGCTATTTGGGTTAACAGATGTTAGGAAC  550

seq1  TGGTCCAGTGTCATGTCACGCCTGAATGCCAGAGTCCTGAGGGCTGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGTGTCATGTCACGCCTGAATGCCAGAGTCCTGAGGGCTGACCC  600

seq1  TGTCCTTTCCCACCATTTGCCCTATAGATTGTCTTAAACCCCTGGCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCCCACCATTTGCCCTATAGATTGTCTTAAACCCCTGGCCTGA  650

seq1  GGGTTCTGTAAGGGCATGGCCTTTGTCACTGGCATAGCTTCTAATTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGTAAGGGCATGGCCTTTGTCACTGGCATAGCTTCTAATTGAGA  700

seq1  CTAGACAAAATGTTACTTCTCTGTTCTTGAATTC  734
      ||||||||||||||||||||||||||||||||||
seq2  CTAGACAAAATGTTACTTCTCTGTTCTTGAATTC  734


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