BAC Information

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BAC

Clone NameB6Ng01-331J09
Chromosome6 (Build37)
Map Location 69,456,638 - 69,457,377
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077
Downstream geneIgkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331J09.bB6Ng01-331J09.g
ACCGA117911GA117912
length7421,033
definitionB6Ng01-331J09.b B6Ng01-331J09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaactgaggaataccaaatgtttgagaatcaccaaaagaaatg
ttcaacatccttactcaacagggaaatgcaaatcaaaacaaccctgcaat
tccatctcacacaagtcagaatggaaaaaaaaaaaaaaaacaggtgacac
agatgctggtgaggttgtagaaaaagaggaaattcttgttttctaatatt
atgtaattacaactcttgggctggtgatattgactgaatagaaatatgat
tgtgagcatcaacttctgtatttgccaggtattggcagagcctctcagga
gacagctatatcaggctcctgtcagcaagctcttgttcacatctgccata
gtgcctgggtttagtggttgtttatgggatggatcctcaagtggggtagt
ctctggatggttattcctttagtttctgctccaacatttgtctctgtaac
tcattccatggctattttgttctcccttctaagaagtattctgagcttct
ggactatatccacttatcagtgaatacagtacccccagagctccatgggt
ctaaaccaaaaatcaaagaaaacacatggtgggactcatggcgcttgcta
catatgtagctgagtatggcctatttggtcattagtgggagaagagtccc
taggtcttgtgtaggttctatgccccattatagaggactgccaggggcca
ggaatgggagtgaaagggttggggagcaggagaagggggtat
gaattcctggtccttccaagactttttccataaaggggttttgaattttc
tcaaatgctcttggcatataatgagatgatcctgtgtttatttttcattg
agtttgtttttttagtgtattatgttgatggctttgcatatatcaaatca
tctatgcattcctgggataaagcctacatgatcttgaagaaggagtgttc
ccattgttccaaatcattgtcagtatgtgctgctgcttgagttgttaaaa
gtagctattctaatggatataatatagaatttcacagttgtttagatttt
catttacctgataactaaagactttgaacattttttgagtgtgtctagtt
cattagagagtcctctgttaagaattctgtgtttgactctgtaccccata
ttttaagctgcataatttggttcgttggtgaatactttcttacattttta
aaatactttgcatattaaccctctgtcatatgtaggatcattgaagatcc
tttccaaatctgtaggttgctattttgtcttattgacagtgtcctttacc
tcacagaaacttttcagtttcattagatcccatttgctaatttttgagcc
agaaccattgatgttctgttcaggaaactatctcctgtaccatatttgcc
atgttttcttctgctgggtttcatgttgagttctttgatccaatcggact
tgagttttgtatggggaaataaatatggatctatttttcattcatttgct
tgaggacagaagcatttgttcaagatattttcctttttccctttgtatgc
ttttgccttctttgtgaaaaaatcaagtgatcataggcatgttggtttat
ttcagcatcttcaattagattctcctgttcgacctgtttgtttctatacc
aagtctgcagttttttattactggttgttgtgtagcatagcttgaggtca
gagatgggtgatactttcaaatgtgccttttaattggtttagtattatct
tatacctatcctggttggttgatacatatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_69456638_69457377
seq2: B6Ng01-331J09.b_49_789

seq1  GAATTCTTAACTGAGGAATACCAAATGTTTGAGAATCACCAAAAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACTGAGGAATACCAAATGTTTGAGAATCACCAAAAGAAATG  50

seq1  TTCAACATCCTTACTCAACAGGGAAATGCAAATCAAAACAACCCTGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTACTCAACAGGGAAATGCAAATCAAAACAACCCTGCAAT  100

seq1  TCCATCTCACACAAGTCAGAATGGAAAAAAAAAAAAAAAACAGGTGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCACACAAGTCAGAATGGAAAAAAAAAAAAAAAACAGGTGACAC  150

seq1  AGATGCTGGTGAGGTTGTAGAAAAAGAGGAAATTCTTGTTTTCTAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGTGAGGTTGTAGAAAAAGAGGAAATTCTTGTTTTCTAATATT  200

seq1  ATGTAATTACAACTCTTGGGCTGGTGATATTGACTGAATAGAAATATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTACAACTCTTGGGCTGGTGATATTGACTGAATAGAAATATGAT  250

seq1  TGTGAGCATCAACTTCTGTATTTGCCAGGTATTGGCAGAGCCTCTCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCATCAACTTCTGTATTTGCCAGGTATTGGCAGAGCCTCTCAGGA  300

seq1  GACAGCTATATCAGGCTCCTGTCAGCAAGCTCTTGTTCACATCTGCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTATATCAGGCTCCTGTCAGCAAGCTCTTGTTCACATCTGCCATA  350

seq1  GTGCCTGGGTTTAGTGGTTGTTTATGGGATGGATCCTCAAGTGGGGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGGTTTAGTGGTTGTTTATGGGATGGATCCTCAAGTGGGGTAGT  400

seq1  CTCTGGATGGTTATTCCTTTAGTTTCTGCTCCAACATTTGTCTCTGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATGGTTATTCCTTTAGTTTCTGCTCCAACATTTGTCTCTGTAAC  450

seq1  TCATTCCATGGCTATTTTGTTCTCCCTTCTAAGAAGTATTCTGAGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCATGGCTATTTTGTTCTCCCTTCTAAGAAGTATTCTGAGCTTCT  500

seq1  GGACTATATCCACTTATCAGTGAATACAGTACCCCCAGAGCTCCATGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATATCCACTTATCAGTGAATACAGTACCCCCAGAGCTCCATGGGT  550

seq1  CTAAACCAAAAATCAAAGAAAACACATGGTGGGACTCATGGCGCTTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCAAAAATCAAAGAAAACACATGGTGGGACTCATGGCGCTTGCTA  600

seq1  CATATGTAGCTGAGTATGGCCTATTTGGTCATTAGTGGGAGAAGAGTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAGCTGAGTATGGCCTATTTGGTCATTAGTGGGAGAAGAGTCCC  650

seq1  TAGGTCTTGTGTAGGTTCTATGCCCCATTATAGAGGACTGCCA-GGGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGGTCTTGTGTAGGTTCTATGCCCCATTATAGAGGACTGCCAGGGGCCA  700

seq1  GGAATGGGAGTGAAAGGGTTGGGGAGCAGGAGAAGGGGGTA  740
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGGAGTGAAAGGGTTGGGGAGCAGGAGAAGGGGGTA  741