BAC Information

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BAC

Clone NameB6Ng01-332M23
Chromosome6 (Build37)
Map Location 42,780,555 - 42,882,322
singlet/doubletdoublet
Overlap geneOlfr449, Olfr448, Olfr447, Olfr446
Upstream genePip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450
Downstream geneGA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332M23.bB6Ng01-332M23.g
ACCGA118808GA118809
length1,141646
definitionB6Ng01-332M23.b B6Ng01-332M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,881,175 - 42,882,322)(42,780,555 - 42,781,194)
sequence
gaattcagagagtgaagctgaatcaacatcagatgcaacttccagaatta
atctgtagtgacccacatcctttagttgccctcccacctaatcttcacca
cctgcagtcatgctatcatatgaccatatcaaggtatcaacccattgcta
aggttagaccctcatgatctaattatgtgtagaaatgacacccttctgat
acccccagaagtgtgattctgtagtgttctatgcatctttcaatccagtc
aggttgacagacagtcatcacagtatagcaaaatacctaaagatttattc
agatctctataccaggaaatagatatcaagactgaaacttaatatcttag
actactccaaacacagacttaatagtacagtcagctaaaagataggcaat
ccaacaatatttttggaaaacaattttcctttgaggtatataaagcacat
tttccacatttgacagtaaattatgcaattaaacagataactcatgtatt
tggctaactgaattccagaaatctccatgacattcaagaaatatcagaca
tgcaacagaaattgatagtttatgttttgtaaaaaagaacagtttaatac
ttttcatattattttgaaactacatatgtatataaatacagcagagaaag
aatatttgctctaattaaatttttcttattcatagtccattttaaagtct
gagtaaaatttaaaagagatagacttgattaaacctttctttcattaaat
cagagagggcagccattacaatttaaaacattgtgtttcactttttgctg
ttatattttagacaggctctcacgttatagccaagactgccctcaaattt
gcagtaatcctcctttgctaggcctccagattacaagtgtgagtccccac
actcatccttctctgtgacttttctattcagagatttaaacacaatgcct
gttctcttgagttcaggtgcctgtgaaaggtaaaccagtccatgatcacc
ttgagatggattacaggcagccatgagctacttgagttgggtgttgagaa
gtgaactcctggtctttcaaagagcagtgtatgtttttaggtgcccagca
ctttagaataaactcattctccaaggctccgtgtgtctgtg
gaattcctgattggtcaaaacataattttatattttttgtgtgatgctgc
tagaaataatcaatcatttgtaccttaaatgttttccaaaaacttatgtg
ttgaagatgtgggtcttaacttgatcctattgagaggcaataaaacttct
aaaaaaatatttgctggaataaagtagggtcaccttttggcaaacaataa
aagagcattgcagcatgcataaatcctttttcttccctacttgctcatga
ccttgtttatcacaacataatgcaaagtagagtaagggcaatgggacaca
gattctttcctttgcttcattgttggcatgtaaggaatagacctattctg
tcccaacatgatggactgtgctgccacaagccaaaagtctccaggtactg
ataccacacaccaaaatgaagtcttccttacttttaattaacacactatt
ttgtcacaatgatgcaatgctgataattgaaaagggctcaaccaaaactc
aaggatgatttttaactctaattatagggggagtttttgtgtcttcttga
cactgattctcaatgctataatgatcttttatgtgaggtagcaacgtact
cactctaggacttgttctgtcgaaacacaataccatgggtaccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42881175_42882322
seq2: B6Ng01-332M23.b_42_1182 (reverse)

seq1  CACAGGACACAACGGAGCTGTGGAG-ATGAGTTTATTCTTAAAAGTGCTT  49
      |||| ||||| |||||||  ||||| |||||||||||||  |||||||| 
seq2  CACA-GACAC-ACGGAGCCTTGGAGAATGAGTTTATTCT--AAAGTGCTG  46

seq1  GGCACTTAAAAACATACACTGCTCTTTTGAAAGACCA-GAGTTCACTTCT  98
      ||||| |||||||||||||||||| |||||||||||| ||||||||||||
seq2  GGCACCTAAAAACATACACTGCTC-TTTGAAAGACCAGGAGTTCACTTCT  95

seq1  CAACACCCAACTCAAGTAGCTCATGGTTGCCTGTAATTCCATCTCAAGGT  148
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  CAACACCCAACTCAAGTAGCTCATGGCTGCCTGTAA-TCCATCTCAAGGT  144

seq1  GATCATGGACTGGTTTTACCTTTCACAGGCACCTGAACTCAAGAGAACAG  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATCATGGACTGG-TTTACCTTTCACAGGCACCTGAACTCAAGAGAACAG  193

seq1  GCATTGTGTTTTAAAATCTCTGAATAGAAAAGTCACAGAGAAGGATGAGT  248
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGTTT--AAATCTCTGAATAGAAAAGTCACAGAGAAGGATGAGT  241

seq1  GTGGGGACTCACACTTGTAATCTGGAGGCCTAGCAAAGGAGGATTACTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGACTCACACTTGTAATCTGGAGGCCTAGCAAAGGAGGATTACTGC  291

seq1  AAATTTGAGGGCAGTCTTGGCTATAACGTGAGAGCCTGTCTAAAATATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAGGGCAGTCTTGGCTATAACGTGAGAGCCTGTCTAAAATATAA  341

seq1  CAGCAAAAAGTGAAACACAATGTTTTAAATTGTAATGGCTGCCCTCTCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAAAGTGAAACACAATGTTTTAAATTGTAATGGCTGCCCTCTCTG  391

seq1  ATTTAATGAAAGAAAGGTTTAATCAAGTCTATCTCTTTTAAATTTTACTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGAAAGAAAGGTTTAATCAAGTCTATCTCTTTTAAATTTTACTC  441

seq1  AGACTTTAAAATGGACTATGAATAAGAAAAATTTAATTAGAGCAAATATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTAAAATGGACTATGAATAAGAAAAATTTAATTAGAGCAAATATT  491

seq1  CTTTCTCTGCTGTATTTATATACATATGTAGTTTCAAAATAATATGAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGCTGTATTTATATACATATGTAGTTTCAAAATAATATGAAAA  541

seq1  GTATTAAACTGTTCTTTTTTACAAAACATAAACTATCAATTTCTGTTGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAACTGTTCTTTTTTACAAAACATAAACTATCAATTTCTGTTGCA  591

seq1  TGTCTGATATTTCTTGAATGTCATGGAGATTTCTGGAATTCAGTTAGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATATTTCTTGAATGTCATGGAGATTTCTGGAATTCAGTTAGCCA  641

seq1  AATACATGAGTTATCTGTTTAATTGCATAATTTACTGTCAAATGTGGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGAGTTATCTGTTTAATTGCATAATTTACTGTCAAATGTGGAAA  691

seq1  ATGTGCTTTATATACCTCAAAGGAAAATTGTTTTCCAAAAATATTGTTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTTATATACCTCAAAGGAAAATTGTTTTCCAAAAATATTGTTGG  741

seq1  ATTGCCTATCTTTTAGCTGACTGTACTATTAAGTCTGTGTTTGGAGTAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTATCTTTTAGCTGACTGTACTATTAAGTCTGTGTTTGGAGTAGT  791

seq1  CTAAGATATTAAGTTTCAGTCTTGATATCTATTTCCTGGTATAGAGATCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATATTAAGTTTCAGTCTTGATATCTATTTCCTGGTATAGAGATCT  841

seq1  GAATAAATCTTTAGGTATTTTGCTATACTGTGATGACTGTCTGTCAACCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATCTTTAGGTATTTTGCTATACTGTGATGACTGTCTGTCAACCT  891

seq1  GACTGGATTGAAAGATGCATAGAACACTACAGAATCACACTTCTGGGGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGATTGAAAGATGCATAGAACACTACAGAATCACACTTCTGGGGGT  941

seq1  ATCAGAAGGGTGTCATTTCTACACATAATTAGATCATGAGGGTCTAACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGGGTGTCATTTCTACACATAATTAGATCATGAGGGTCTAACCT  991

seq1  TAGCAATGGGTTGATACCTTGATATGGTCATATGATAGCATGACTGCAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGGGTTGATACCTTGATATGGTCATATGATAGCATGACTGCAGG  1041

seq1  TGGTGAAGATTAGGTGGGAGGGCAACTAAAGGATGTGGGTCACTACAGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGATTAGGTGGGAGGGCAACTAAAGGATGTGGGTCACTACAGAT  1091

seq1  TAATTCTGGAAGTTGCATCTGATGTTGATTCAGCTTCACTCTCTGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTGGAAGTTGCATCTGATGTTGATTCAGCTTCACTCTCTGAATTC  1141

seq1: chr6_42780555_42781194
seq2: B6Ng01-332M23.g_67_712

seq1  GAATTCCTGATTGTTCCTAACATAATTTTATATTTTTTGTGTGATGCTGC  50
      ||||||||||||| ||  ||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTGGTCAAAACATAATTTTATATTTTTTGTGTGATGCTGC  50

seq1  TAGAAATTATCAATCATTTGTACCTTAAATGTTTTCCAAAAACTTATGTG  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAATCAATCATTTGTACCTTAAATGTTTTCCAAAAACTTATGTG  100

seq1  TTGAAGATGTGGGTCTTAACTTGATCCTATTGAGAGGCAATAAAACTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATGTGGGTCTTAACTTGATCCTATTGAGAGGCAATAAAACTTCT  150

seq1  AAGAAAATATTTGCTGGAATAAAGTAGGGTCACCTTTTGGCAAACAATAA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATTTGCTGGAATAAAGTAGGGTCACCTTTTGGCAAACAATAA  200

seq1  AAGAGCATTGCAGCATGCATAAATCCTTTTTCTTCCCTACTTGCTCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATTGCAGCATGCATAAATCCTTTTTCTTCCCTACTTGCTCATGA  250

seq1  CCTTGTTTATCACAACATAATGCAAAGTAGAGTAAGGGCAATGGGACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTATCACAACATAATGCAAAGTAGAGTAAGGGCAATGGGACACA  300

seq1  GATTCTTTCCTTTGCTTCATTGTTGGCATGTAAGGAATAGACCTATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTCCTTTGCTTCATTGTTGGCATGTAAGGAATAGACCTATTCTG  350

seq1  TCCCAACATGATGGACTGTGCTGCCACAAGCCAAAAGTCTCCAGGTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACATGATGGACTGTGCTGCCACAAGCCAAAAGTCTCCAGGTACTG  400

seq1  ATACCACACACCAAAATGAAGTCTTCCTTACTTTTAATTAACACACTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACACACCAAAATGAAGTCTTCCTTACTTTTAATTAACACACTATT  450

seq1  TTGTCACAATGATGCAATGCTGATAATTGAAAAGGGCTCAACCAAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACAATGATGCAATGCTGATAATTGAAAAGGGCTCAACCAAAACTC  500

seq1  AAGGATGATTTTTAACTCTAATTATAGGGGGAG-TTTTGTGTCTTCTTGA  549
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGGATGATTTTTAACTCTAATTATAGGGGGAGTTTTTGTGTCTTCTTGA  550

seq1  CACTGATT-TC-ATGCTATAATGATCTTTTAGGT-TGGTAGCAACATAAT  596
      |||||||| || ||||||||||||||||||| ||  ||||||||| || |
seq2  CACTGATTCTCAATGCTATAATGATCTTTTATGTGAGGTAGCAACGTACT  600

seq1  CACTCTA-GAAATGTTC-AAGGAAACACAATACCATGGGTAGCACC  640
      ||||||| ||  |||||    |||||||||||||||||||| ||||
seq2  CACTCTAGGACTTGTTCTGTCGAAACACAATACCATGGGTACCACC  646