BAC Information

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BAC

Clone NameB6Ng01-333C17
Chromosome6 (Build37)
Map Location 110,131,215 - 110,213,448
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333C17.bB6Ng01-333C17.g
ACCGA119060GA119061
length1,1961,102
definitionB6Ng01-333C17.b B6Ng01-333C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,212,254 - 110,213,448)(110,131,215 - 110,132,320)
sequence
gaattctgtttatcacagttgcatcaaaacacttacatagatatatctta
ttatataaaaaataatagtaactaaaaggggaaagagagaaatccataga
cattttaatccacacctttgcaatgatatacaaaaattcactacattaga
gtgtctataaataaccaaatcaataaacaatgacctaaggattatttagt
gctcaataatgaaagattatttttaatagaactatattttaagagttaga
cttttgtgaatcactgaattattctcaatgactataagaactctggaagt
cctttctttcctagaaatgaattaggttatattgtcattgaagcacatat
acattataataataggaaagtggaagaagtagaactggagaagagaacgt
gaagcagggggagaataaggatcccaaatacctagaaatgattcatttgt
aagcaatgtaaacattgcagaaatatttagaaacacaagattgggggcgg
gcttttataaatatatggcatattaaaaccaaaagcaattctctttggag
gagaatttatggataaaagattgaaagccaattgtttaattttcacatta
aaatgaataaaaatattagctactaatgtatgtgatgcataaggaagaaa
gtaataaagctaagaattgaaattagtgaaataaaaagtagtaataataa
aattaacattacttttcttaaaaatatgctttagaatgcactagtaaaat
gtccaagaaaattttaaaaaaaacatatggacaacatccaaaatgttata
tattataaatgtgtagagattcttacaaaaaaatacatttagggttgttc
agtaagcacttgactgactcagctatctccccaacccatattttcatatt
tcgtagttaggtcagtctctctcagtccaccttgtacaatatccatatat
actactaaatcctactaaactttcattaggtcctattatattactctttt
tttttagttgtggacaggaagccaaggctggcttcgtgacagtaaatcat
catttaactagttcaagctctgcctattgaatagtctttcctggttcaga
ggaacagcctactgggcctcatgaagttctaatgtattttatcaagctta
catgccctcacatggcgtgggagatctgttctcatactattcatat
gaattcagcacagttgtcagcatgcacaagacctgtgacagttcaaactg
gattaaatacaattttggagcaggctgatgggtgtgaagtctcatcccta
gttggtgaggtaccggtaattgttagctttcagggtagacagcgagattc
agttttgttttaagaagatagcacttggtaggtcaaccgtattccagtgg
aaggccacatcctcaagagcacataggcagcacaagctgtacttgattga
taaggaaaaatgacacaaaaattcatgggtagtgaacaggagtggatttt
gaaggagttggggaaggggtgaataacaattaaaacacactgtataaaat
cctcaaagaattaataagacttctcaaaaaatagtctgattgaatccagt
taattctaaaataaaccatttcaatgagctcttgagaatactacaatatg
tgtagtacatagagtgtactctaggcttagtgttggttacttctttctca
tttttctttcctttatttttcttatcccctcccttcttcttgctaagaaa
accattgcccattttctatctatctttttgctattattataattagtagt
gttgggtatattatcagattcagagccactgacagtaccaagaaaagtct
ttttttccctttaatttatttgtaaggttacaaaatgaaacataaggaaa
atgtcattgtctggcccgaagaaaaaatgtttctctataattaaataaat
gggaaaatacctttcatgttctgatatgtaaactgacaatttctctgaag
ttttattgtagcaattactttgtagtacaactacagagaaatatttattc
aaaattacattgttttatgtgttacattcttacactaggagatgtactgc
aaaaaaaaaaagcaatcagcaaaaccaaagccatatcttataaagatgct
actattgaaatatttttgtcacatacaggccttgaaaaaaaactattagg
atgaagcatacttaatttctttcagtacttttggaagcccaggagactac
taatctagctttcatagatcaatctttctctgctacctttctgaatttaa
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110212254_110213448
seq2: B6Ng01-333C17.b_49_1244 (reverse)

seq1  ATATG-ATAGTTATGAG-ACAGATCT--CACGCATTGTGAGGGGCACTGG  46
      ||||| |||| |||||| ||||||||  |||||  ||||| ||||| || 
seq2  ATATGAATAG-TATGAGAACAGATCTCCCACGCCATGTGA-GGGCA-TGT  47

seq1  TAGGCTGAT-AAATACATTAGAACTTCATGA-GCCCAGTAGGGCTGTT-C  93
       ||  |||| ||||||||||||||||||||| |||||||| ||||||| |
seq2  AAGCTTGATAAAATACATTAGAACTTCATGAGGCCCAGTA-GGCTGTTCC  96

seq1  TCTGAACCAGGAAAGACTAATTCAATAGGCAGAGCTTTGAACTAGTTAAA  143
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  TCTGAACCAGGAAAGACT-ATTCAATAGGCAGAGC-TTGAACTAGTTAAA  144

seq1  TGATGATTTACTGTCCACGAAGCCAGCCTTGGCTTCCTGTCCACAACT-A  192
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  TGATGATTTACTGT-CACGAAGCCAGCCTTGGCTTCCTGTCCACAACTAA  193

seq1  AAAAAAAGAGTAATATAATAGGACCTAATGAAAGTTTAGTAGGATTTAGT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAGTAATATAATAGGACCTAATGAAAGTTTAGTAGGATTTAGT  243

seq1  AGTATATATGGATATTGTACAAGGTGGACTGAGAGAGACTGACCTAACTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATATGGATATTGTACAAGGTGGACTGAGAGAGACTGACCTAACTA  293

seq1  CGAAATATGAAAATATGGGTTGGGGAGATAGCTGAGTCAGTCAAGTGCTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATATGAAAATATGGGTTGGGGAGATAGCTGAGTCAGTCAAGTGCTT  343

seq1  ACTGAACAACCCTAAATGTATTTTTTTGTAAGAATCTCTACACATTTATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACAACCCTAAATGTATTTTTTTGTAAGAATCTCTACACATTTATA  393

seq1  ATATATAACATTTTGGATGTTGTCCATATGTTTTTTTTAAAATTTTCTTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAACATTTTGGATGTTGTCCATATGTTTTTTTTAAAATTTTCTTG  443

seq1  GACATTTTACTAGTGCATTCTAAAGCATATTTTTAAGAAAAGTAATGTTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTACTAGTGCATTCTAAAGCATATTTTTAAGAAAAGTAATGTTA  493

seq1  ATTTTATTATTACTACTTTTTATTTCACTAATTTCAATTCTTAGCTTTAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTATTACTACTTTTTATTTCACTAATTTCAATTCTTAGCTTTAT  543

seq1  TACTTTCTTCCTTATGCATCACATACATTAGTAGCTAATATTTTTATTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTTCCTTATGCATCACATACATTAGTAGCTAATATTTTTATTCA  593

seq1  TTTTAATGTGAAAATTAAACAATTGGCTTTCAATCTTTTATCCATAAATT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTGAAAATTAAACAATTGGCTTTCAATCTTTTATCCATAAATT  643

seq1  CTCCTCCAAAGAGAATTGCTTTTGGTTTTAATATGCCATATATTTATAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCAAAGAGAATTGCTTTTGGTTTTAATATGCCATATATTTATAAA  693

seq1  AGCCCGCCCCCAATCTTGTGTTTCTAAATATTTCTGCAATGTTTACATTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGCCCCCAATCTTGTGTTTCTAAATATTTCTGCAATGTTTACATTG  743

seq1  CTTACAAATGAATCATTTCTAGGTATTTGGGATCCTTATTCTCCCCCTGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATGAATCATTTCTAGGTATTTGGGATCCTTATTCTCCCCCTGC  793

seq1  TTCACGTTCTCTTCTCCAGTTCTACTTCTTCCACTTTCCTATTATTATAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTTCTCTTCTCCAGTTCTACTTCTTCCACTTTCCTATTATTATAA  843

seq1  TGTATATGTGCTTCAATGACAATATAACCTAATTCATTTCTAGGAAAGAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGTGCTTCAATGACAATATAACCTAATTCATTTCTAGGAAAGAA  893

seq1  AGGACTTCCAGAGTTCTTATAGTCATTGAGAATAATTCAGTGATTCACAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCCAGAGTTCTTATAGTCATTGAGAATAATTCAGTGATTCACAA  943

seq1  AAGTCTAACTCTTAAAATATAGTTCTATTAAAAATAATCTTTCATTATTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAACTCTTAAAATATAGTTCTATTAAAAATAATCTTTCATTATTG  993

seq1  AGCACTAAATAATCCTTAGGTCATTGTTTATTGATTTGGTTATTTATAGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAAATAATCCTTAGGTCATTGTTTATTGATTTGGTTATTTATAGA  1043

seq1  CACTCTAATGTAGTGAATTTTTGTATATCATTGCAAAGGTGTGGATTAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAATGTAGTGAATTTTTGTATATCATTGCAAAGGTGTGGATTAAA  1093

seq1  ATGTCTATGGATTTCTCTCTTTCCCCTTTTAGTTACTATTATTTTTTATA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATGGATTTCTCTCTTTCCCCTTTTAGTTACTATTATTTTTTATA  1143

seq1  TAATAAGATATATCTATGTAAGTGTTTTGATGCAACTGTGATAAACAGAA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGATATATCTATGTAAGTGTTTTGATGCAACTGTGATAAACAGAA  1193

seq1  TTC  1195
      |||
seq2  TTC  1196

seq1: chr6_110131215_110132320
seq2: B6Ng01-333C17.g_64_1165

seq1  GAATTCAGCACAGTTGTCAGCATGCACAAGACCTGTGACAGTTCAAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACAGTTGTCAGCATGCACAAGACCTGTGACAGTTCAAACTG  50

seq1  GATTAAATACAATTTTGGAGCAGGCTGATGGGTGTGAAGTCTCATCCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATACAATTTTGGAGCAGGCTGATGGGTGTGAAGTCTCATCCCTA  100

seq1  GTTGGTGAGGTACCGGTAATTGTTAGCTTTCAGGGTAGACAGCGAGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGAGGTACCGGTAATTGTTAGCTTTCAGGGTAGACAGCGAGATTC  150

seq1  AGTTTTGTTTTAAGAAGATAGCACTTGGTAGGTCAACCGTATTCCAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTTTTAAGAAGATAGCACTTGGTAGGTCAACCGTATTCCAGTGG  200

seq1  AAGGCCACATCCTCAAGAGCACATAGGCAGCACAAGCTGTACTTGATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACATCCTCAAGAGCACATAGGCAGCACAAGCTGTACTTGATTGA  250

seq1  TAAGGAAAAATGACACAAAAATTCATGGGTAGTGAACAGGAGTGGATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAAATGACACAAAAATTCATGGGTAGTGAACAGGAGTGGATTTT  300

seq1  GAAGGAGTTGGGGAAGGGGTGAATAACAATTAAAACACACTGTATAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTTGGGGAAGGGGTGAATAACAATTAAAACACACTGTATAAAAT  350

seq1  CCTCAAAGAATTAATAAGACTTCTCAAAAAATAGTCTGATTGAATCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGAATTAATAAGACTTCTCAAAAAATAGTCTGATTGAATCCAGT  400

seq1  TAATTCTAAAATAAACCATTTCAATGAGCTCTTGAGAATACTACAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAAAATAAACCATTTCAATGAGCTCTTGAGAATACTACAATATG  450

seq1  TGTAGTACATAGAGTGTACTCTAGGCTTAGTGTTGGTTACTTCTTTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTACATAGAGTGTACTCTAGGCTTAGTGTTGGTTACTTCTTTCTCA  500

seq1  TTTTTCTTTCCTTTATTTTTCTTATCCCCTCCCTTCTTCTTGCTAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCCTTTATTTTTCTTATCCCCTCCCTTCTTCTTGCTAAGAAA  550

seq1  ACCATTGCCCATTTTCTATCTATCTTTTTGCTATTATTATAATTAGTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCCCATTTTCTATCTATCTTTTTGCTATTATTATAATTAGTAGT  600

seq1  GTTGGGTATATTATCAGATTCAGAGCCACTGACAGTACCAAGAAAAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTATATTATCAGATTCAGAGCCACTGACAGTACCAAGAAAAGTCT  650

seq1  TTTTTTCCCTTTAATTTATTTGTAAGGTTACAAAATGAAACATAAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCTTTAATTTATTTGTAAGGTTACAAAATGAAACATAAGGAAA  700

seq1  ATGTCATTGTCTGGCCCGAAGAAAAAATGTTTCTCTATAATTAAATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTGTCTGGCCCGAAGAAAAAATGTTTCTCTATAATTAAATAAAT  750

seq1  GGGAAAATACCTTTCATGTTCTGATATGTAAACTGACAATTTCTCTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATACCTTTCATGTTCTGATATGTAAACTGACAATTTCTCTGAAG  800

seq1  TTTTATTGTAGCAATTACTTTGTAGTACAACTACAGAGAAATATTTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGTAGCAATTACTTTGTAGTACAACTACAGAGAAATATTTATTC  850

seq1  AAAATTACATTGTTTTATGTGTTACATTCTTACACTAGGAGATGTACTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACATTGTTTTATGTGTTACATTCTTACACTAGGAGATGTACTGC  900

seq1  AAAAAAAAAAAAGCAATCAGCAAAACCAAAGCCATATCTTATAAAAGATG  950
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  -AAAAAAAAAAAGCAATCAGCAAAACCAAAGCCATATCTTAT-AAAGATG  948

seq1  CTACTATTGAAATATTTTTGTCACATACAGGCCTT-AAAAAAAACTATTA  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  CTACTATTGAAATATTTTTGTCACATACAGGCCTTGAAAAAAAACTATT-  997

seq1  AGGATGAAGCATACTTAATTTTCTTTCAGTACTTTTGAAAGGCCCAAGGA  1049
      |||||||||||||||||| |||||||||||||||||| |||  || ||||
seq2  AGGATGAAGCATACTTAA-TTTCTTTCAGTACTTTTGGAAG--CCCAGGA  1044

seq1  GACTACT-ATCTAGCTTTCATAGATC-ATC-TTCTCTGGTTTATCTTTCT  1096
      ||||||| |||||||||||||||||| ||| |||||||   || ||||||
seq2  GACTACTAATCTAGCTTTCATAGATCAATCTTTCTCTG--CTACCTTTCT  1092

seq1  GAATATAAAA  1106
      |||| |||||
seq2  GAATTTAAAA  1102