BAC Information

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BAC

Clone NameB6Ng01-333L17
Chromosome6 (Build37)
Map Location 35,347,965 - 35,479,702
singlet/doubletdoublet
Overlap geneMtpn
Upstream geneAkr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
Downstream geneLOC100039312, LOC100039327, 9330158H04Rik, Chrm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333L17.bB6Ng01-333L17.g
ACCGA119430GA119431
length1,0241,101
definitionB6Ng01-333L17.b B6Ng01-333L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,478,679 - 35,479,702)(35,347,965 - 35,349,086)
sequence
gaattctctccccagctctggtgccagtcccatgacctggtttggtttct
aactccaccagtgaaagagaaggctagttagcacaattttcactggttca
ttcataattaattcagcaaataccagttaagcacctgcagtgccagcaat
tgtattagggaagcatgaacacaacaaaagtggatgcttctaaggatatg
tgttctttggggactttatttgagtgttcaagaaaacagcaaatacaatg
attatatggcttctgaataaactctctttcttaaatatatgaaatatgga
taaaacttagaaagtagctttatattttggtagtaaaatgcaactctata
aaaaatagatgatatatatgaaaatctatgataaatttatatttggttcc
aaaagaaagaaaattcaaaactgtaaaatatctgattcaaattagaattt
cagttaaaagaaaagaatacatcttctttgagtgccctattgtatgtaaa
tagtgaacacagtgtacatatagatacacatatcatttaactacataaag
gcttacccttttcttatagtcagagaagtgggaactgagtaactttccct
agctctcatagggagaggaggacaggaggatttcagctcagatctgagtc
attccagaagagcattcttgtttctttcccatcattatttattatacatt
tgagagctacaaatgatgggggtaggaatgaagtcttcttcctccctcct
ttccatttatttccctcccttgttatgggtttatttacaaatacaacttt
tagatctgtgacctattaaataggatagcagatactttccacgctgcaaa
accttttcagaaggaattgcaactacggatcactgagttcatactttgta
agtgaaggtacattttgatttctttttcttttcaaactgagaaccataga
attttgagattttgagtgttatttttttttttactttggtaaggcttgct
tcgtgtgtgtgtgtgtgtgtgtgt
gaattctcagaaaagcctgttagaacttgggtgctaaaaaccaatccaaa
ggcattagagcgtagaacattccacaccatgggacaccctgctctgacct
acagtgcttctcttttggaaattgtagtttaaatacgcacccatggaagc
tgacatcattggcatagaaccaacaggtaagccagtggtcaagctggggt
cctctggtgaaatatggccagtaagacatacagaggaggaggcttaagac
agactggctcacatgattagggaggtgaagacattctaccgcctgcttgt
aggcgggtgtgagactcagcaaagatacttattaactttggactgcagat
atgcgagaatccgaggaaccagtccaaggacataaaaagaccaatacccc
aaatctcaagcaggtggcagaaagggaaagggaaaaaatccctgcctgct
ctgaaattctgttctagttttggagacagagtctggctatgtgtccaggc
ttgtctgaaatccctgggctcaaggaatgctcctggcccagcttctgagt
acccagggccaccactctgagctctcattttcttgttcttccacagactg
gataccgccacccacattagggagggtgatctgttttcgcaagtccgaag
attggaatgcagggtcttgtctgggaataccttcattgatactcaagagt
ttcacttgggtatccctactccagtagaagttgagaattaaaattaatca
gagtagccacccagccacagaactcaagaggacagagaagccagaaagaa
aagtggcctctgggacctgggcaggggttggactggggtgtaggaacaag
taccattggttccagaagccagaacaactgccctgcctctggtgaaagag
gaaaagtgccaagagccaagagccgagacttgctttgactgttctgtaca
ggctgtggggctcccatcataggcacatgctaaggagcctctagtgactc
tgtactcaatggctaacagactccccccccccctttttatcttatgacgt
agtagtataagtagcattcatcagattgggctggaaggagtgatctattg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35478679_35479702
seq2: B6Ng01-333L17.b_45_1068 (reverse)

seq1  ACACACACACACACACACACACGAAGCAAGCCTTACCAAAGTAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACGAAGCAAGCCTTACCAAAGTAAAAAAAA  50

seq1  AAATAACACTCAAAATCTCAAAATTCTATGGTTCTCAGTTTGAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACACTCAAAATCTCAAAATTCTATGGTTCTCAGTTTGAAAAGAAA  100

seq1  AAGAAATCAAAATGTACCTTCACTTACAAAGTATGAACTCAGTGATCCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCAAAATGTACCTTCACTTACAAAGTATGAACTCAGTGATCCGT  150

seq1  AGTTGCAATTCCTTCTGAAAAGGTTTTGCAGCGTGGAAAGTATCTGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAATTCCTTCTGAAAAGGTTTTGCAGCGTGGAAAGTATCTGCTAT  200

seq1  CCTATTTAATAGGTCACAGATCTAAAAGTTGTATTTGTAAATAAACCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTAATAGGTCACAGATCTAAAAGTTGTATTTGTAAATAAACCCAT  250

seq1  AACAAGGGAGGGAAATAAATGGAAAGGAGGGAGGAAGAAGACTTCATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGGAGGGAAATAAATGGAAAGGAGGGAGGAAGAAGACTTCATTCC  300

seq1  TACCCCCATCATTTGTAGCTCTCAAATGTATAATAAATAATGATGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCATCATTTGTAGCTCTCAAATGTATAATAAATAATGATGGGAAA  350

seq1  GAAACAAGAATGCTCTTCTGGAATGACTCAGATCTGAGCTGAAATCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGAATGCTCTTCTGGAATGACTCAGATCTGAGCTGAAATCCTCC  400

seq1  TGTCCTCCTCTCCCTATGAGAGCTAGGGAAAGTTACTCAGTTCCCACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCCTCTCCCTATGAGAGCTAGGGAAAGTTACTCAGTTCCCACTTC  450

seq1  TCTGACTATAAGAAAAGGGTAAGCCTTTATGTAGTTAAATGATATGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTATAAGAAAAGGGTAAGCCTTTATGTAGTTAAATGATATGTGTA  500

seq1  TCTATATGTACACTGTGTTCACTATTTACATACAATAGGGCACTCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGTACACTGTGTTCACTATTTACATACAATAGGGCACTCAAAGA  550

seq1  AGATGTATTCTTTTCTTTTAACTGAAATTCTAATTTGAATCAGATATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATTCTTTTCTTTTAACTGAAATTCTAATTTGAATCAGATATTTT  600

seq1  ACAGTTTTGAATTTTCTTTCTTTTGGAACCAAATATAAATTTATCATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTGAATTTTCTTTCTTTTGGAACCAAATATAAATTTATCATAGA  650

seq1  TTTTCATATATATCATCTATTTTTTATAGAGTTGCATTTTACTACCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATATATCATCTATTTTTTATAGAGTTGCATTTTACTACCAAAA  700

seq1  TATAAAGCTACTTTCTAAGTTTTATCCATATTTCATATATTTAAGAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCTACTTTCTAAGTTTTATCCATATTTCATATATTTAAGAAAGA  750

seq1  GAGTTTATTCAGAAGCCATATAATCATTGTATTTGCTGTTTTCTTGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATTCAGAAGCCATATAATCATTGTATTTGCTGTTTTCTTGAACA  800

seq1  CTCAAATAAAGTCCCCAAAGAACACATATCCTTAGAAGCATCCACTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATAAAGTCCCCAAAGAACACATATCCTTAGAAGCATCCACTTTTG  850

seq1  TTGTGTTCATGCTTCCCTAATACAATTGCTGGCACTGCAGGTGCTTAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCATGCTTCCCTAATACAATTGCTGGCACTGCAGGTGCTTAACT  900

seq1  GGTATTTGCTGAATTAATTATGAATGAACCAGTGAAAATTGTGCTAACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGCTGAATTAATTATGAATGAACCAGTGAAAATTGTGCTAACTA  950

seq1  GCCTTCTCTTTCACTGGTGGAGTTAGAAACCAAACCAGGTCATGGGACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCTTTCACTGGTGGAGTTAGAAACCAAACCAGGTCATGGGACTG  1000

seq1  GCACCAGAGCTGGGGAGAGAATTC  1024
      ||||||||||||||||||||||||
seq2  GCACCAGAGCTGGGGAGAGAATTC  1024

seq1: chr6_35347965_35349086
seq2: B6Ng01-333L17.g_68_1168

seq1  GAATTCTCAGAAAAGCCTGTTAGAACTTGGGTGCTAAAAACCAATCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAAAGCCTGTTAGAACTTGGGTGCTAAAAACCAATCCAAA  50

seq1  GGCATTAGAGCGTAGAACATTCCACACCATGGGACACCCTGCTCTGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGAGCGTAGAACATTCCACACCATGGGACACCCTGCTCTGACCT  100

seq1  ACAGTGCTTCTCTTTTGGAAATTGTAGTTTAAATACGCACCCATGGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTTCTCTTTTGGAAATTGTAGTTTAAATACGCACCCATGGAAGC  150

seq1  TGACATCATTGGCATAGAACCAACAGGTAAGCCAGTGGTCAAGCTGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCATTGGCATAGAACCAACAGGTAAGCCAGTGGTCAAGCTGGGGT  200

seq1  CCTCTGGTGAAATATGGCCAGTAAGACATACAGAGGAGGAGGCTTAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTGAAATATGGCCAGTAAGACATACAGAGGAGGAGGCTTAAGAC  250

seq1  AGACTGGCTCACATGATTAGGGAGGTGAAGACATTCTACCGCCTGCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCTCACATGATTAGGGAGGTGAAGACATTCTACCGCCTGCTTGT  300

seq1  AGGCGGGTGTGAGACTCAGCAAAGATACTTATTAACTTTGGACTGCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGTGTGAGACTCAGCAAAGATACTTATTAACTTTGGACTGCAGAT  350

seq1  ATGCGAGAATCCGAGGAACCAGTCCAAGGACATAAAAAGACCAATACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAGAATCCGAGGAACCAGTCCAAGGACATAAAAAGACCAATACCCC  400

seq1  AAATCTCAAGCAGGTGGCAGAAAGGGAAAGGGAAAAAATCCCTGCCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCAAGCAGGTGGCAGAAAGGGAAAGGGAAAAAATCCCTGCCTGCT  450

seq1  CTGAAATTCTGTTCTAGTTTTGGAGACAGAGTCTGGCTATGTGTCCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTCTGTTCTAGTTTTGGAGACAGAGTCTGGCTATGTGTCCAGGC  500

seq1  TTGTCTGAAATCCCTGGGCTCAAGGAATGCTCCTGGCCCAGCTTCTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGAAATCCCTGGGCTCAAGGAATGCTCCTGGCCCAGCTTCTGAGT  550

seq1  ACCCAGGGCCACCACTCTGAGCTCTCATTTTCTTGTTCTTCCACAGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGCCACCACTCTGAGCTCTCATTTTCTTGTTCTTCCACAGACTG  600

seq1  GATACCGCCACCCACATTAGGGAGGGTGATCTGTTTTCGCAAGTCCGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCGCCACCCACATTAGGGAGGGTGATCTGTTTTCGCAAGTCCGAAG  650

seq1  ATTGGAATGCAGGGTCTTGTCTGGGAATACCTTCATTGATACTCAAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATGCAGGGTCTTGTCTGGGAATACCTTCATTGATACTCAAGAGT  700

seq1  TTCACTTGGGTATCCCTACTCCAGTAGAAGTTGAGAATTAAAATTAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGGGTATCCCTACTCCAGTAGAAGTTGAGAATTAAAATTAATCA  750

seq1  GAGTAGCCACCCAGCCACAGAACTCAAGAGGACAGAGAAGCCAGAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCCACCCAGCCACAGAACTCAAGAGGACAGAGAAGCCAGAAAGAA  800

seq1  AAGTGGCCTCTGGGACCTGGGCAGGGGTTGGACTGGGGTGTAGGAACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCCTCTGGGACCTGGGCAGGGGTTGGACTGGGGTGTAGGAACAAG  850

seq1  TACCATTGGTTCCAGAAGCCAGAACAACTGCCCTGCCTCTGGTGAAAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTGGTTCCAGAAGCCAGAACAACTGCCCTGCCTCTGGTGAAAGAG  900

seq1  GAAAAGGTGCCAAGAGCCAAGAGCCGAGACTTGCTTTGAACTGTTTCTGT  950
      ||||| |||||||||||||||||||||||||||||||| |||| ||||||
seq2  GAAAA-GTGCCAAGAGCCAAGAGCCGAGACTTGCTTTG-ACTG-TTCTGT  947

seq1  ACAGGCTGTGGGGGCTCCCATCATAGGCAACATGCTTAAGGGAGCCCTCT  1000
      ||||||||| |||||||||||||||||| |||||||  | |||| |||||
seq2  ACAGGCTGT-GGGGCTCCCATCATAGGC-ACATGCT--AAGGAG-CCTCT  992

seq1  AGTGACTCCTGTACTTCAATTGGCTAACAGACTCCCCCCCCCCTTTTTTT  1050
      ||||||| |||||| |||| ||||||||||||||||||||||| ||||| 
seq2  AGTGACT-CTGTAC-TCAA-TGGCTAACAGACTCCCCCCCCCCCTTTTT-  1038

seq1  AATCTTTATGACAGGTAGTAGTATAGTTAGCATTCTATCAGGTATTGGGG  1100
       ||| |||||||  |||||||||||  |||||||| |||||  ||| |||
seq2  -ATC-TTATGAC--GTAGTAGTATAAGTAGCATTC-ATCAG--ATT-GGG  1080

seq1  CTGAGAGGAGTTGATCTATTGT  1122
      |||  ||||| |||||||||||
seq2  CTGGAAGGAG-TGATCTATTGT  1101