BAC Information

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BAC

Clone NameB6Ng01-333N24
Chromosome6 (Build37)
Map Location 85,607,876 - 85,608,401
singlet/doubletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333N24.bB6Ng01-333N24.g
ACCGA119527GA119528
length1,224904
definitionB6Ng01-333N24.b B6Ng01-333N24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattctttttaatagctgagtagtactccattgtgtgaatgtacc
atattttttgtatccattcctctgttgagggacatctgggttctttccag
cttctggctattataaataaggctgctatgaacatagtggagcatgagtc
cttcttaccggttgggacatcttctggatgtatgcccaggagaggtattg
cgggatcctccagtagtactatgtccaattttctgagaaccgccagactg
atttccagagttgttgtacaagcctgcaatcccaccaacaatggaggagt
cttcctctttctccacatcctcgccagcatctgctgtcacctgaattttt
gatcttagccattctgactggtgtgagatggaatctcagggttgttttga
tttgcatttctctgatgattaaggatgttgaacattttttcaggtgtttc
tcagtctttcgttattcctctgatgagaattctttgttcagctctgagcc
aaatcttttaaggggactatttgattttctggagtccaccctcttgaatt
ctttatatatattggatattagtccccgaactgatttaagataggtaaag
atcctttcccaatctgttggtggtctttttgtcttattgacggtgtcttt
tgccttgcaggatctttgaagtttcatgaggtcccatttgtcaatcctca
atcttaaagcacaagccattgctgttctattcaggaatttttcccctgtg
cccatatcttcgagacttttccccactttctcctcaataagtttcactgt
ttctggttttatgtggagttacttgatccacttagatttgaccttagtac
aaggagagaggaatgggtcgattcacattcttctacatgataacaactag
ttgtcccagcaccatttgttgaaaatgctgtcttttttccatgaccatag
gtgtgtgggttcatttctgggtcttcaattctattccattggtctacatg
tctgtcactatgccagtacatgtagtttttatcacaatttgctctgcagt
aaagctttagggtaggcatgtgattccactaggaaggtcttttattcttg
gaaaggagctctgctatctaaggtttttgttatcagaatgaatttgccag
attgccttttcattgtgtgagattggcttgcaaattgttgggcgaattgc
atctggaatctgtacgataaagtc
gaattccttttctggtccagtctatttggagctctgtaggcttcttgtat
gttcatgggcatctctttctttaggtttgggaagttttcttctaaaattt
tgttgaagatatttgttggccctttaagttgaaaagcttcattctcatct
acccctattatctgtaggtttggtcttctcattgtgtcctggagttcctg
gatgttttgagttaggacctttttgcattttgcattttctttgattgttg
tgcccttgttctctatggaatcttctgcacctgagattctttcttccatc
tcttgtattctgttgctgatgcttgcatctatgattccagatttctttac
tagggtttctatctccagctttgtctcactttgggttttctttattgttt
ctacttccctttttaggtcttggatagttttgttcaattttatcccctgt
ttggttgtgttttcctgtatttctttaaggacttctacctctttagcagt
gttctcctttatttctttaagtgagttattaaagtccttcttgatgtcct
ctaccagcatcacgagatatgattttaaatctgagtcttgcttttcgggt
atgttggggtatccaggactgggtgaggtgggattgctgggttctgatga
tggtgagtggtcttgatttctgttagtaggattcttacatttgcctttca
ccatctagtaatcttggagttagttgctatagttgtctctggttggaact
tgttcctcctgtgattctgttagcctctaccagcagacctgagagactag
ctctctcctgagtctcagtggtcagagtactctctgcaggtaagctctcc
tcttgcaggaaaggtgcacagatatctggcatttggacctgcctccttgc
tcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85607876_85608401
seq2: B6Ng01-333N24.g_66_571 (reverse)

seq1  GAGAACACTGCTAAACAGGTAGAAGACATTAAAGAGGAAGCACAAAAATC  50
      ||||||||||||||| |||||||||                         
seq2  GAGAACACTGCTAAAGAGGTAGAAG------------------------T  26

seq1  CCTTAAAGAATTGCAGGAAAACACAACTAAACAGGTGATGGAATTGAATA  100
      |||||||||| | |||||||||||||| ||||||| |||  ||||||| |
seq2  CCTTAAAGAAATACAGGAAAACACAACCAAACAGGGGATAAAATTGAACA  76

seq1  AAACCATCCAAGACCTAAAAAGGGAAGTAGACACAAT----AAAACCCAA  146
      |||| |||||||||||||||||||||||||| |||||    |||||||||
seq2  AAACTATCCAAGACCTAAAAAGGGAAGTAGAAACAATAAAGAAAACCCAA  126

seq1  AGTGAGGCAACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAAACAT  196
      |||||| ||| |||||||||||||||||||| |||||||||||||| |||
seq2  AGTGAGACAAAGCTGGAGATAGAAACCCTAGTAAAGAAATCTGGAATCAT  176

seq1  AGATGCGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAG  246
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  AGATGCAAGCATCAGCAACAGAATACAAGAGATGGAAGAAAGAATCTCAG  226

seq1  GTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGA  296
      ||||||||||||||||||||||||  |||||||||||||||||||||| |
seq2  GTGCAGAAGATTCCATAGAGAACAAGGGCACAACAATCAAAGAAAATGCA  276

seq1  AAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAAT  346
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  AAATGCAAAAAGGTCCTAACTCAAAACATCCAGGAACTCCAGGACACAAT  326

seq1  GAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTT  396
      ||||||||||||||||| ||||||||| || ||||||||||||| |||| 
seq2  GAGAAGACCAAACCTACAGATAATAGGGGTAGATGAGAATGAAGCTTTTC  376

seq1  AACTCAAAGTACCGGCAAATATCTTCAACAAAATTATAGAAGAAAACGTC  446
      |||| ||||  ||  |||||||||||||||||||| ||||||||||| ||
seq2  AACTTAAAGGGCCAACAAATATCTTCAACAAAATTTTAGAAGAAAACTTC  426

seq1  CCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAAC  496
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  CCAAACCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAGC  476

seq1  TCCAAATAGACTGGACCAGAAAAGAAATTC  526
      |||||||||||||||||||||||| |||||
seq2  TCCAAATAGACTGGACCAGAAAAGGAATTC  506