BAC Information

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BAC

Clone NameB6Ng01-334C11
Chromosome6 (Build37)
Map Location 86,727,085 - 86,870,870
singlet/doubletdoublet
Overlap geneAnxa4, 2610306M01Rik, Aak1
Upstream geneLOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1
Downstream geneLOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334C11.bB6Ng01-334C11.g
ACCGA119728GA119729
length1,1941,196
definitionB6Ng01-334C11.b B6Ng01-334C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,869,668 - 86,870,870)(86,727,085 - 86,728,306)
sequence
gaattcatttccctcttaatttttaccatagagagtagaaaagtgtggca
gagatcatggaaaacgaagtacaaatggctgtgagggctgccatcgcatg
caggcacatggataatgtccacgcatgtgcatgtgggaaccagaggcaat
cttagatgtggttctgcaggagctgcttgccttgctttgtaacacagggt
ctctcactgggtggagtttgccaactaggctaaatctggcccacggggcc
cccagaaccctaccatctttccttccctaatgctgggattacaagcatgc
cccaccatgcctggatttttatatgggagctggggatttaactctgatct
tcatgtttacacaggaagcactgtaccaagtgagctactcccatccccac
caccactaccaccactccaatcagcaatgttaatttctaaaggtgaggag
atacagggccagagatggctcagctggtaaaggtatccaaaactaagcct
gaccaaatgagtacaatcgctgtcacctacaaaaaggaaggaaagagctg
attcctacagttgtcctctgacttccacatgtccctccccaaaatgaatg
agtcaatgaatgaatgaatgaatgaatgaatgagaaaagaaaaatttaaa
aaacctaaaatggaaacccaaattttatttgaaaactctagatttaaaca
taagcaataagtcacattttatattaacggtaaataacatcactacagaa
gctaaacactttacagactctgagcttccagtattctgcctctgatctaa
tctaaacccttcatcttactgatatgcagagacaggaaacaacatagtaa
atgttccaaaccttaaagaatacttgtaagcaaactccaatacatgagta
tatattggttagcaagttcttgccagaaagacccagaatttccatgtggc
tatttcccctacataaatagacaaagaaggattaagttctccattcagac
acagaggtaattagcaagaaattccacaggacccctcatctatttgtggt
tttcttttgtaaaccaactgtaacaaccatcacaatgggcttaacagcat
catgcacttcccacaacatcacaacaggagcggctctgcagatcgttctt
ctctttcttcctcaacctgcatgtggagctctagtttcttgtac
gaattctctatgcagaccaggctagccttcaattcacagaaatcctcctg
tctctacttcctgagtgctgggatcaaaggcatgagccaccatacccagg
taataaatcctttaaaataggaaacaggaatagaaaagggggatgggtga
gtcccagaggaaataaattcctgccaggttggattattggggtacagaga
actttagggagcacctggccctgattttcaggcagttaacagcatcacct
acagcaaatggtggcagagtgccacagtagctcaaaggctctgtgctgac
tcactgtgggcagcataggcggaccctacaaccagagagcctgtgccgtc
cttccaatgagaagtccagatccaggggcagagagggaagccagctgact
tttcatttagtcaaaatttccccatcgtagccactcagaacagaattctc
tttaaagctcatctcatcttccctccaaaataaagtggtggagtcctggg
gactatttgttcttataatctttatatacatacttcctatatatgggcca
aggtgtagtttctcatgtttcagtttcctcatgggctacatagaatcaat
accaagaattagtaatatgaggactaatcaagctatgaccccaaattctt
agaatggtaaacacattgtgaacctgacaacatctctctattctctttac
tactatttgttctagaacaatctggccccatatgtgagaactgactgtac
acaacagtgggatcaagtgaaacagatccaagattgttcagagtgaaact
ttctgggcacttagtgatagaagaggtttttacccagcagcaatgccagg
tggctcttttgtcaggcattaggacaaaagtgactccacccaacccagaa
cgtacctatcttacctcaagcaatatcaaagagacaggaagtcccggcac
cagagtctggtagtagtaaagcccccatccatcatcaccttagtggtttt
gtttggttgtaagctaggaagccacgtggaaagagagttagagaccacca
gagctactcagaggcatcacgtgttagatgcagcagatgctgctatcaag
cccagtaaactggcggtcattctctcgcaatggactcctatggttctgtt
gccacggactatctatatcacagccttccctggatgcgagaaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86869668_86870870
seq2: B6Ng01-334C11.b_48_1241 (reverse)

seq1  GTACAGAGAAACTAGAGCT-CACATTGCAGGGTTTGAGGAAGAAGAGGAA  49
      ||||| ||||||||||||| |||| ||||||  ||||||||||| ||  |
seq2  GTACA-AGAAACTAGAGCTCCACA-TGCAGG--TTGAGGAAGAA-AGAGA  45

seq1  AGAACGATCTGCAGAAGCCGCTCCCTGTTGTGATGGTTGTGGG-AGTGCA  98
      |||||||||||||| ||||||| ||||||||||| |||||||| ||||||
seq2  AGAACGATCTGCAG-AGCCGCT-CCTGTTGTGAT-GTTGTGGGAAGTGCA  92

seq1  TGATGCTG-TAAGGCCATTGTGATGTGTG-TACAGTTGGTTTAC-AAAGA  145
      |||||||| |||| |||||||||||  || |||||||||||||| |||||
seq2  TGATGCTGTTAAGCCCATTGTGATGGTTGTTACAGTTGGTTTACAAAAGA  142

seq1  AAACCACAAATAGATGAGGGGTCTTGTGGAATTTCTTGCTAATTACCTCT  195
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAACCACAAATAGATGAGGGGTCCTGTGGAATTTCTTGCTAATTACCTCT  192

seq1  GTGTTCTTGAATGGAGAACTTAATCCTTCTTTGTCTATTTTATGTAGGGG  245
      ||||   |||||||||||||||||||||||||||||| |||||||| |||
seq2  GTGT--CTGAATGGAGAACTTAATCCTTCTTTGTCTA-TTTATGTA-GGG  238

seq1  GAAATAGCCACATGGAAATTCTGGGTCTTTTCTGGCAAGAACTTGCTAAC  295
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAATAGCCACATGGAAATTCTGGGTC-TTTCTGGCAAGAACTTGCTAAC  287

seq1  CAATATATACTCATGTATTGGAGTTTGCTTACAAGTATTCTTTTAAGGTT  345
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAATATATACTCATGTATTGGAGTTTGCTTACAAGTATTC-TTTAAGGTT  336

seq1  TGGAACATTTACTATGTTGTTTCCTGTCTCTGCATATCAGTAAGATGAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATTTACTATGTTGTTTCCTGTCTCTGCATATCAGTAAGATGAAG  386

seq1  GGTTTAGATTAGATCAGAGGCAGAATACTGGAAGCTCAGAGTCTGTAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGATTAGATCAGAGGCAGAATACTGGAAGCTCAGAGTCTGTAAAG  436

seq1  TGTTTAGCTTCTGTAGTGATGTTATTTACCGTTAATATAAAATGTGACTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGCTTCTGTAGTGATGTTATTTACCGTTAATATAAAATGTGACTT  486

seq1  ATTGCTTATGTTTAAATCTAGAGTTTTCAAATAAAATTTGGGTTTCCATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTATGTTTAAATCTAGAGTTTTCAAATAAAATTTGGGTTTCCATT  536

seq1  TTAGGTTTTTTAAATTTTTCTTTTCTCATTCATTCATTCATTCATTCATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTTTTAAATTTTTCTTTTCTCATTCATTCATTCATTCATTCATT  586

seq1  CATTGACTCATTCATTTTGGGGAGGGACATGTGGAAGTCAGAGGACAACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACTCATTCATTTTGGGGAGGGACATGTGGAAGTCAGAGGACAACT  636

seq1  GTAGGAATCAGCTCTTTCCTTCCTTTTTGTAGGTGACAGCGATTGTACTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATCAGCTCTTTCCTTCCTTTTTGTAGGTGACAGCGATTGTACTC  686

seq1  ATTTGGTCAGGCTTAGTTTTGGATACCTTTACCAGCTGAGCCATCTCTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTCAGGCTTAGTTTTGGATACCTTTACCAGCTGAGCCATCTCTGG  736

seq1  CCCTGTATCTCCTCACCTTTAGAAATTAACATTGCTGATTGGAGTGGTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATCTCCTCACCTTTAGAAATTAACATTGCTGATTGGAGTGGTGG  786

seq1  TAGTGGTGGTGGGGATGGGAGTAGCTCACTTGGTACAGTGCTTCCTGTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTGGTGGGGATGGGAGTAGCTCACTTGGTACAGTGCTTCCTGTGT  836

seq1  AAACATGAAGATCAGAGTTAAATCCCCAGCTCCCATATAAAAATCCAGGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAAGATCAGAGTTAAATCCCCAGCTCCCATATAAAAATCCAGGC  886

seq1  ATGGTGGGGCATGCTTGTAATCCCAGCATTAGGGAAGGAAAGATGGTAGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGGCATGCTTGTAATCCCAGCATTAGGGAAGGAAAGATGGTAGG  936

seq1  GTTCTGGGGGCCCCGTGGGCCAGATTTAGCCTAGTTGGCAAACTCCACCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGGGCCCCGTGGGCCAGATTTAGCCTAGTTGGCAAACTCCACCC  986

seq1  AGTGAGAGACCCTGTGTTACAAAGCAAGGCAAGCAGCTCCTGCAGAACCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGACCCTGTGTTACAAAGCAAGGCAAGCAGCTCCTGCAGAACCA  1036

seq1  CATCTAAGATTGCCTCTGGTTCCCACATGCACATGCGTGGACATTATCCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAGATTGCCTCTGGTTCCCACATGCACATGCGTGGACATTATCCA  1086

seq1  TGTGCCTGCATGCGATGGCAGCCCTCACAGCCATTTGTACTTCGTTTTCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGCATGCGATGGCAGCCCTCACAGCCATTTGTACTTCGTTTTCC  1136

seq1  ATGATCTCTGCCACACTTTTCTACTCTCTATGGTAAAAATTAAGAGGGAA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTCTGCCACACTTTTCTACTCTCTATGGTAAAAATTAAGAGGGAA  1186

seq1  ATGAATTC  1203
      ||||||||
seq2  ATGAATTC  1194

seq1: chr6_86727085_86728306
seq2: B6Ng01-334C11.g_67_1262

seq1  GAATTCTCTATGCAGACCAGGCTAGCCTTCAATTCACAGAAATCCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGCAGACCAGGCTAGCCTTCAATTCACAGAAATCCTCCTG  50

seq1  TCTCTACTTCCTGAGTGCTGGGATCAAAGGCATGAGCCACCATACCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTCCTGAGTGCTGGGATCAAAGGCATGAGCCACCATACCCAGG  100

seq1  TAATAAATCCTTTAAAATAGGAAACAGGAATAGAAAAGGGGGATGGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATCCTTTAAAATAGGAAACAGGAATAGAAAAGGGGGATGGGTGA  150

seq1  GTCCCAGAGGAAATAAATTCCTGCCAGGTTGGATTATTGGGGTACAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAGGAAATAAATTCCTGCCAGGTTGGATTATTGGGGTACAGAGA  200

seq1  ACTTTAGGGAGCACCTGGCCCTGATTTTCAGGCAGTTAACAGCATCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGGAGCACCTGGCCCTGATTTTCAGGCAGTTAACAGCATCACCT  250

seq1  ACAGCAAATGGTGGCAGAGTGCCACAGTAGCTCAAAGGCTCTGTGCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATGGTGGCAGAGTGCCACAGTAGCTCAAAGGCTCTGTGCTGAC  300

seq1  TCACTGTGGGCAGCATAGGCGGACCCTACAACCAGAGAGCCTGTGCCGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGGGCAGCATAGGCGGACCCTACAACCAGAGAGCCTGTGCCGTC  350

seq1  CTTCCAATGAGAAGTCCAGATCCAGGGGCAGAGAGGGAAGCCAGCTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATGAGAAGTCCAGATCCAGGGGCAGAGAGGGAAGCCAGCTGACT  400

seq1  TTTCATTTAGTCAAAATTTCCCCATCGTAGCCACTCAGAACAGAATTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTAGTCAAAATTTCCCCATCGTAGCCACTCAGAACAGAATTCTC  450

seq1  TTTAAAGCTCATCTCATCTTCCCTCCAAAATAAAGTGGTGGAGTCCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCTCATCTCATCTTCCCTCCAAAATAAAGTGGTGGAGTCCTGGG  500

seq1  GACTATTTGTTCTTATAATCTTTATATACATACTTCCTATATATGGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTGTTCTTATAATCTTTATATACATACTTCCTATATATGGGCCA  550

seq1  AGGTGTAGTTTCTCATGTTTCAGTTTCCTCATGGGCTACATAGAATCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAGTTTCTCATGTTTCAGTTTCCTCATGGGCTACATAGAATCAAT  600

seq1  ACCAAGAATTAGTAATATGAGGACTAATCAAGCTATGACCCCAAATTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAATTAGTAATATGAGGACTAATCAAGCTATGACCCCAAATTCTT  650

seq1  AGAATGGTAAACACATTGTGAACCTGACAACATCTCTCTATTCTCTTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTAAACACATTGTGAACCTGACAACATCTCTCTATTCTCTTTAC  700

seq1  TACTATTTGTTCTAGAACAATCTGGCCCCATATGTGAGAACTGACTGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTGTTCTAGAACAATCTGGCCCCATATGTGAGAACTGACTGTAC  750

seq1  ACAACAGTGGGATCAAGTGAAACAGATCCAAGATTGTTCAGAGTGAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTGGGATCAAGTGAAACAGATCCAAGATTGTTCAGAGTGAAACT  800

seq1  TTCTGGGCACTTAGTGATAGAAGAGGTTTTTACCCAGCAGCAATGCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCACTTAGTGATAGAAGAGGTTTTTACCCAGCAGCAATGCCAGG  850

seq1  TGGCTCTTTTGTCAGGCATTAGGACAAAAGTGACTCCACCCAACCCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTTTGTCAGGCATTAGGACAAAAGTGACTCCACCCAACCCAGAA  900

seq1  CGTACCTATCTTACCTCAAGCAAATATCAAAGAGACAGGAAGTCCCGGCA  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGTACCTATCTTACCTCAAGC-AATATCAAAGAGACAGGAAGTCCCGGCA  949

seq1  CCAGAGTCTGGTAGTAGTAAAGCCCCCATCCATCATCACCTTAGTGGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCAGAGTCTGGTAGTAGTAAAGCCCCCATCCATCATCACCTTAGTGG-TT  998

seq1  TTGTTTGGTTGTAAGCTAGGAAGCCACGTGGAAAGGAGAGGTTAGAGACC  1050
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  TTGTTTGGTTGTAAGCTAGGAAGCCACGTGGAAA-GAGA-GTTAGAGACC  1046

seq1  AACCAGAGCTACTCAGAGGCAATCACGGTGGTTAGATGCAAGCAAGATGG  1100
       ||||||||||||||||||| ||||||   ||||||||| ||| |||| |
seq2  -ACCAGAGCTACTCAGAGGC-ATCACG--TGTTAGATGC-AGC-AGAT-G  1089

seq1  CTGCTATCAGGCCAAGGTAAACCTGCGGGTCATTCTCTCGCAATAGACTT  1150
      ||||||||| ||| | ||||| |||  ||||||||||||||||| |||| 
seq2  CTGCTATCAAGCCCA-GTAAA-CTGGCGGTCATTCTCTCGCAATGGACT-  1136

seq1  TCCCTCTATGTGTCTGTTGTCACGGACTATCTAT-TCACAG-CTTCCCT-  1197
           |||||  ||||||| |||||||||||||| |||||| ||||||| 
seq2  ----CCTATGGTTCTGTTGCCACGGACTATCTATATCACAGCCTTCCCTG  1182

seq1  GATGCAGACTTACAGGATGAAACTG  1222
      |||||          || |||||||
seq2  GATGC----------GA-GAAACTG  1196