BAC Information

Click to search

BAC

Clone NameB6Ng01-335H21
Chromosome6 (Build37)
Map Location 118,063,811 - 118,064,911
singlet/doubletsinglet
Overlap geneGalnact2
Upstream geneCxcl12, LOC213422, EG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a
Downstream geneRet, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335H21.bB6Ng01-335H21.g
ACCGA120701GA120702
length1,2141,090
definitionB6Ng01-335H21.b B6Ng01-335H21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaagcaaccctgagat
tccacctcacagcagtcagaatggctaagatcaaaaattcaggtgacagt
agaagctggcgaggatatggagaaagaggaacactccactgttggtggga
gtgcaagcttgtacaaccactctggaaatcagtctggcggttcctcagaa
aattggacatagtactaccggaagatcccgcaagacctctcctgggcata
tatccagaagatgttccaactcgtaagaaggacacatcctccaatatgtt
catagaagccttatttataatagccagaagctggaaagaacccagatgtc
cctcaacagaggaatgaatacagaaaatgtggtacatttacacaatggag
tactactcagctattaaaaagaatgaatttataaaattcctaggcaaatg
gatggacctggagggcatcatcctgagtgaggtaacccaatcacaaaaga
actcacatgatatgtactcactgataagtggatattagcccagaaactta
gaatacccaagatacaagatacaatttgcaaaatacatgaacctcaagaa
gagcgaagaccaaatgtggacactttgccccttcttagaattgggaacaa
aacacccatggaaggagttacagagacaaaatttggaactgagacgaaag
gttggaccatctagagactgccatacccggggatccatcccataatcagc
ctccaaatgctgacaccattgcatacaccagcaagattttgctgaaagga
ccctgatatagctgtctcttgtgagtctatgccagggcctggcaaacaca
gaagtggatgctcacagtcagctattggatggatcacagagcccccaatg
gaggagctagagaaagtacccaaggagctaaatggatctgcaacctatag
gtgtacaacaatatgaaaccccctggagctcatgtcttctagctgcaata
cgtatcagagatggcctagtcagcctattcattaaggaagagagcccttt
tcgtctttgccaacctttcaatatgctcagttacaaggggtaaagctaag
ctagcatggaattggttggctaaagggagagtgccagctcaacgatgagt
acgtgctgtgtcta
gaattcttctctttacaaaactactctttggcacttcttgtgagtacaaa
tgaggaggagaagagagagatgagcccagacctctgaccacttctttggc
cttagcgatgttgtttctagctccgacttcagaggcctcttcccttttgt
cttcacactggccttttgcatagcactcaaacagaaaactaaaaagggct
tcatctttaaatgaaaagagaaagcctttaactagatactccaagattac
ttgtggctgtaacacctacgacaacccgtcaggttctagaaagctctgga
agagtactgcaaacaactgtaaacacagcgacacaccagccaatgatttc
tttcttgtttgcttgcttttaaagaaaccagtaagttcagcttttacctt
tacaacctcatttttataatccaagacattaactatgagctttgctttgc
ctttcatagtttagctatacatccctacaatttaactaagggcactcaat
tctgatacctttcaggaaaatgccataaggcctagaataaagacatcaag
ttctacccttagtgtatacccaccgacactcaggaaatccgattgatatt
gacaggtcatcccaaagccaaagtctctccaaaaaccagagtccttttta
tgaaccttatggtaaagaagaaaaaattcaatttaatctttagtaactag
aagttttaatcaataattgaacaaccacgtcacaaaaattttttcctatc
atttatttaaaggatcatgtgctgtgacatccttacaaaacaagcgacta
tcctaatctgcatgagcacaggacttttaacacttgaactcaagtcctgt
actgctttgaagctgaggttactaataacaaaaaaggatggtcctgactt
caatgggttcatgataggggacagagttaattgtggatgtgtgtgtgtgt
cataatttacacaaccaccttctatacactgtaaaaacattcattttttc
tctttcggccctgctctcagatgatgactgagactatttataataaatgc
cttgatcaagcttggctcatccctgactaggctcagaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_118063811_118064911
seq2: B6Ng01-335H21.g_65_1154

seq1  GAATTCTTCTCTTTACAAAACTACTCTTTGGCACTTCTTGTGAGTACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTTTACAAAACTACTCTTTGGCACTTCTTGTGAGTACAAA  50

seq1  TGAGGAGGAGAAGAGAGAGATGAGCCCAGACCTCTGACCACTTCTTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGAGAAGAGAGAGATGAGCCCAGACCTCTGACCACTTCTTTGGC  100

seq1  CTTAGCGATGTTGTTTCTAGCTCCGACTTCAGAGGCCTCTTCCCTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCGATGTTGTTTCTAGCTCCGACTTCAGAGGCCTCTTCCCTTTTGT  150

seq1  CTTCACACTGGCCTTTTGCATAGCACTCAAACAGAAAACTAAAAAGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACTGGCCTTTTGCATAGCACTCAAACAGAAAACTAAAAAGGGCT  200

seq1  TCATCTTTAAATGAAAAGAGAAAGCCTTTAACTAGATACTCCAAGATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTAAATGAAAAGAGAAAGCCTTTAACTAGATACTCCAAGATTAC  250

seq1  TTGTGGCTGTAACACCTACGACAACCCGTCAGGTTCTAGAAAGCTCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTGTAACACCTACGACAACCCGTCAGGTTCTAGAAAGCTCTGGA  300

seq1  AGAGTACTGCAAACAACTGTAAACACAGCGACACACCAGCCAATGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTGCAAACAACTGTAAACACAGCGACACACCAGCCAATGATTTC  350

seq1  TTTCTTGTTTGCTTGCTTTTAAAGAAACCAGTAAGTTCAGCTTTTACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTTGCTTGCTTTTAAAGAAACCAGTAAGTTCAGCTTTTACCTT  400

seq1  TACAACCTCATTTTTATAATCCAAGACATTAACTATGAGCTTTGCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCTCATTTTTATAATCCAAGACATTAACTATGAGCTTTGCTTTGC  450

seq1  CTTTCATAGTTTAGCTATACATCCCTACAATTTAACTAAGGGCACTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAGTTTAGCTATACATCCCTACAATTTAACTAAGGGCACTCAAT  500

seq1  TCTGATACCTTTCAGGAAAATGCCATAAGGCCTAGAATAAAGACATCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATACCTTTCAGGAAAATGCCATAAGGCCTAGAATAAAGACATCAAG  550

seq1  TTCTACCCTTAGTGTATACCCACCGACACTCAGGAAATCCGATTGATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCCTTAGTGTATACCCACCGACACTCAGGAAATCCGATTGATATT  600

seq1  GACAGGTCATCCCAAAGCCAAAGTCTCTCCAAAAACCAGAGTCCTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTCATCCCAAAGCCAAAGTCTCTCCAAAAACCAGAGTCCTTTTTA  650

seq1  TGAACCTTATGGTAAAGAAGAAAAAATTCAATTTAATCTTTAGTAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTATGGTAAAGAAGAAAAAATTCAATTTAATCTTTAGTAACTAG  700

seq1  AAGTTTTAATCAATAATTGAACAACCACGTCACAAAAATTTTTTCCTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAATCAATAATTGAACAACCACGTCACAAAAATTTTTTCCTATC  750

seq1  ATTTATTTAAAGGATCATGTGCTGTGACATCCTTACAAAACAAGCGACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTAAAGGATCATGTGCTGTGACATCCTTACAAAACAAGCGACTA  800

seq1  TCCTAATCTGCATGAGCACAGGACTTTTAACACTTGAACTCAAGTCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATCTGCATGAGCACAGGACTTTTAACACTTGAACTCAAGTCCTGT  850

seq1  ACTGCTTTGAAGCTGAGGTTACTAATAACAAAAAAGGATGGTCCTGACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTGAAGCTGAGGTTACTAATAACAAAAAAGGATGGTCCTGACTT  900

seq1  CAATGGGTTCATGATAGGGGGACAAGAGTTAATTGTGGATGTGTGTGTGT  950
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  CAATGGGTTCATGATA-GGGGAC-AGAGTTAATTGTGGATGTGTGTGTGT  948

seq1  GTCATAATTTACAACAACCACCTTCTATACACTGTAAAAAACATTCATTT  1000
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  GTCATAATTTAC-ACAACCACCTTCTATACACTGT-AAAAACATTCATTT  996

seq1  TTTCCTCTTTCCGGCCCCTGCTCTCAGAATGATGACTGAGACTATTTATT  1050
      ||| |||||||  | |||||||||||| |||||||||||||||||||| |
seq2  TTT-CTCTTTC--GGCCCTGCTCTCAG-ATGATGACTGAGACTATTTA-T  1041

seq1  AATAAATGCCTTGGTCAAAGCTTTGGCTCAATCCCTGACTA-GCTCAGAA  1099
      ||||||||||||| || |||| ||||||| ||||||||||| ||||||||
seq2  AATAAATGCCTTGATC-AAGC-TTGGCTC-ATCCCTGACTAGGCTCAGAA  1088

seq1  CT  1101
      ||
seq2  CT  1090