BAC Information

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BAC

Clone NameB6Ng01-336A22
Chromosome6 (Build37)
Map Location 93,480,026 - 93,501,469
singlet/doubletdoublet
Overlap genenone
Upstream genePrickle2, LOC545866, A730049H05Rik, LOC384461, LOC100043253
Downstream geneLOC665831, Magi1, LOC100043262, LOC665856, Slc25a26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336A22.bB6Ng01-336A22.g
ACCGA121101GA121102
length473921
definitionB6Ng01-336A22.b B6Ng01-336A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,500,991 - 93,501,469)(93,480,026 - 93,480,944)
sequence
tttttccttatcagacaaagctgtgcatatgcttatagcagagaatgcaa
agataagcaaaaagaagcaaataaaaatgccagcagtcacaccaggctga
gatagcctctgataacagtgtctcccaagtttgtagtcccttggggagct
gttaagaaagaccaatggctgtccttccactcaggtggtctgagctggcc
tgccagggaagtttctcaaggtctaatgtgcaaatctaggagacattcag
tctagacattaggctataaaatgtgtgctttattccagaatatagttttg
ttacccgatttcatcatttaattgtttattataagcatcatttcatagaa
agacgacagatctaacccatcttcttaatagtttcccagtgtgagttaat
ttaatcattctcttgtggtttgggtaaaaggggatgttctcacctaggcc
agggtgtgtgtgggggtggggtg

gaattctattgggctgtatggttctattgcttcccgtcattggttttttg
tttttgtttttgttttgttgttgttgttcaatcaaaagccttggaggggt
tggaaggtactgtgcaatccagaaaaaagcagagcaatctccttaattac
tgaactgtctggagattctctctctctctctctctctctctctctctctc
tctctctctctctctctcactccaaatagcacaacaaaagcagaaactct
gtttctctcttctcaaaaggaatttgaacacatctcacagggttctatat
ccttataagccaataagacctgaggtcatcaaaatgctcatgtgcgatca
gggctcatccccccatcagtgtgcatgctgccttaaggggcagaggtggg
atgtctccagcctcaggctccaccatgttctgattcatcccttctctacc
ttcttaacttcaagagaaaatagcgtgtttggtaggcattacagggcttt
tgtttggttctggtttttcagataaatagagtgactagccagcactggct
ttatattttgatggcaaaatgtgacatcactcagaatccctcatagagat
gaagacactgtaaatcatatatatatattttctagaagtttatcctactc
aatagagagctctcgactcttgacatttctgaccctgtatctgtgtgcag
ctactcaggaaagaatcctgtggcaagtgcagatttgaagtgaatggggg
catttttctctatgtgggttttctcaggaatgttttcagtatcacttctg
acatacctcgaaggagatcggtctcgggagaagattgatataaaactcat
aagggaaatggccccctttcatcacgtctttttctcaaagagacaccgcg
aagtcgctgaatctagtagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93500991_93501469
seq2: B6Ng01-336A22.b_48_526 (reverse)

seq1  CACCCCACCCCCACACACACCCTGGCCTAGGTGAGAACATCCCCTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCCCCACACACACCCTGGCCTAGGTGAGAACATCCCCTTTTAC  50

seq1  CCAAACCACAAGAGAATGATTAAATTAACTCACACTGGGAAACTATTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCACAAGAGAATGATTAAATTAACTCACACTGGGAAACTATTAAG  100

seq1  AAGATGGGTTAGATCTGTCGTCTTTCTATGAAATGATGCTTATAATAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGTTAGATCTGTCGTCTTTCTATGAAATGATGCTTATAATAAAC  150

seq1  AATTAAATGATGAAATCGGGTAACAAAACTATATTCTGGAATAAAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATGATGAAATCGGGTAACAAAACTATATTCTGGAATAAAGCACA  200

seq1  CATTTTATAGCCTAATGTCTAGACTGAATGTCTCCTAGATTTGCACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATAGCCTAATGTCTAGACTGAATGTCTCCTAGATTTGCACATTA  250

seq1  GACCTTGAGAAACTTCCCTGGCAGGCCAGCTCAGACCACCTGAGTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGAGAAACTTCCCTGGCAGGCCAGCTCAGACCACCTGAGTGGAAG  300

seq1  GACAGCCATTGGTCTTTCTTAACAGCTCCCCAAGGGACTACAAACTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCATTGGTCTTTCTTAACAGCTCCCCAAGGGACTACAAACTTGGG  350

seq1  AGACACTGTTATCAGAGGCTATCTCAGCCTGGTGTGACTGCTGGCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGTTATCAGAGGCTATCTCAGCCTGGTGTGACTGCTGGCATTTT  400

seq1  TATTTGCTTCTTTTTGCTTATCTTTGCATTCTCTGCTATAAGCATATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTTCTTTTTGCTTATCTTTGCATTCTCTGCTATAAGCATATGCA  450

seq1  CAGCTTTGTCTGATAAGGAAAAAGAATTC  479
      |||||||||||||||||||||||||||||
seq2  CAGCTTTGTCTGATAAGGAAAAAGAATTC  479


seq1: chr6_93480026_93480944
seq2: B6Ng01-336A22.g_64_984

seq1  GAATTCTATTGGGCTGTATGGTTCTATTGCTTCCCGTCATTGGTTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGGGCTGTATGGTTCTATTGCTTCCCGTCATTGGTTTTTTG  50

seq1  TTTTTGTTTTTGTTTTGTTGTTGTTGTTCAATCAAAAGCCTTGGAGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTGTTTTGTTGTTGTTGTTCAATCAAAAGCCTTGGAGGGGT  100

seq1  TGGAAGGTACTGTGCAATCCAGAAAAAAGCAGAGCAATCTCCTTAATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTACTGTGCAATCCAGAAAAAAGCAGAGCAATCTCCTTAATTAC  150

seq1  TGAACTGTCTGGAGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTCTGGAGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  200

seq1  TCTCTCTCTCTCTCTCTCACTCCTAATAGCACAGCAGCAGCAGCAGCTCT  250
      ||||||||||||||||||||||| ||||||||| ||  ||||| | ||||
seq2  TCTCTCTCTCTCTCTCTCACTCCAAATAGCACAACAAAAGCAGAAACTCT  250

seq1  GTTTCTCTCTTCTCAAAAGGAATTTGAACACAGCTCACAGGGTTCAAGAT  300
      |||||||||||||||||||||||||||||||| |||||||||||| | ||
seq2  GTTTCTCTCTTCTCAAAAGGAATTTGAACACATCTCACAGGGTTCTATAT  300

seq1  CCTTAGAAGCCAAGAAGACCTGAGGTCTTCAAAATGCTCATCTTCCATCA  350
      ||||| ||||||| ||||||||||||| ||||||||||||| | | ||||
seq2  CCTTATAAGCCAATAAGACCTGAGGTCATCAAAATGCTCATGTGCGATCA  350

seq1  GTGCTCATCCACCCATCAGTGTGCATGCTGCCTTAGGGGGCAGAGGTGGG  400
      | |||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  GGGCTCATCCCCCCATCAGTGTGCATGCTGCCTTAAGGGGCAGAGGTGGG  400

seq1  ATGTCTCCAGCATCAGGCTCCACCATGTTCTGATTCATCCCTTCTCTACC  450
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCAGCCTCAGGCTCCACCATGTTCTGATTCATCCCTTCTCTACC  450

seq1  TTCTTAACTTCTAGAGAAAATAGACATGTTTGGTGGGCATGACGGGGCTT  500
      ||||||||||| ||||||||||| | |||||||| ||||| || ||||||
seq2  TTCTTAACTTCAAGAGAAAATAG-CGTGTTTGGTAGGCATTACAGGGCTT  499

seq1  TGGGTCGGTGCTGGTATCTCTGATAACTGAATTGACTAGCCAGCACTGGT  550
      | | | ||| ||||| | || ||||| |  | ||||||||||||||||| 
seq2  TTGTTTGGTTCTGGTTTTTCAGATAAATAGAGTGACTAGCCAGCACTGGC  549

seq1  TTTATATATTGATGGCAAAATGTGACATCACTCAGAATTCATCCTAAGGA  600
      ||||||| |||||||||||||||||||||||||||||| | || ||  ||
seq2  TTTATATTTTGATGGCAAAATGTGACATCACTCAGAATCCCTCATAGAGA  599

seq1  TGAAGACTCTG-GACTCATA-ACTGAAGTTCTCTAGAAGTTT-TCCTACT  647
      ||||||| |||  | ||||| |   |  || ||||||||||| |||||||
seq2  TGAAGACACTGTAAATCATATATATATATTTTCTAGAAGTTTATCCTACT  649

seq1  CAATAGAGAGCTCTCGACTCTTGGCATTTCTGACCCTGGACCTGGAGGCA  697
      ||||||||||||||||||||||| |||||||||||||| | |||   |||
seq2  CAATAGAGAGCTCTCGACTCTTGACATTTCTGACCCTGTATCTGTGTGCA  699

seq1  GCTACTCAGGAATGAATCCTGGGGCATGTGCAGATTTGAAGTGGCTTGGG  747
      |||||||||||| |||||||| |||| ||||||||||||||||  | |||
seq2  GCTACTCAGGAAAGAATCCTGTGGCAAGTGCAGATTTGAAGTGAATGGGG  749

seq1  GCATTTTTACTCTAGGT-GGATTTCTCAAGAATCGTTTTCAGTATCAC-T  795
      |||||||| ||||| || || ||||||| |||| |||||||||||||| |
seq2  GCATTTTT-CTCTATGTGGGTTTTCTCAGGAAT-GTTTTCAGTATCACTT  797

seq1  CTGAGATACCTCG-AGGAGATTCGGTCTCAGGAGAAGATTGATATAAACC  844
      |||| |||||||| |||||| |||||||| |||||||||||||||||| |
seq2  CTGACATACCTCGAAGGAGA-TCGGTCTCGGGAGAAGATTGATATAAAAC  846

seq1  TCAAAAGGCAAATGGTCACCATTCATCAGGTCTTTTTCTCCAAGGGACAC  894
      ||| |||| |||||| | || ||||||| ||||||||||| ||| |||||
seq2  TCATAAGGGAAATGGCCCCCTTTCATCACGTCTTTTTCTCAAAGAGACAC  896

seq1  CCCAAAGCCCCTGAATCTAGTAGTG  919
      | | ||| | |||||||||||||||
seq2  CGCGAAGTCGCTGAATCTAGTAGTG  921


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