BAC Information

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BAC

Clone NameB6Ng01-336P16
Chromosome6 (Build37)
Map Location 108,154,067 - 108,277,440
singlet/doubletdoublet
Overlap geneItpr1
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336P16.bB6Ng01-336P16.g
ACCGA121743GA121744
length1,2251,130
definitionB6Ng01-336P16.b B6Ng01-336P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,154,067 - 108,155,277)(108,276,301 - 108,277,440)
sequence
gaattcaataccaaacaacagatgaatggatagagaaaatgtgatacata
tttgcaataggctattacttagccattaaaaaggatacaatcctgctgtt
tgctgcaacaagaatagaccaggaggacattctgtttagtaaaagagtct
agacataaagcattgtagtatatgaccttgctcatatgtactacttgtgg
aaggtgaccagacataagcagtgttgggtggtgggcaattgtcagagagt
gggaagaaaaggcagggaataggttagttaaggagtgtgagctggccttg
accctgaggcatggcaaagccttcctttggtccaagggtggatactggca
gttcgtgcagaaaatgtctaccatagctttctccttctgagtgtttatgg
tctgaggactgtgcccttacagggactgcttctactgagattagctaaac
ctgttctttttttacagctgtataccataaaccttcttccttgttcatct
gtatgtaataacaccatctctttgcacagctgtatgcaataaccaaccct
gcgcccagtctggtcagccctgtttaacaaacctgctgacctttcaggat
gctgaggcatctccagctgatagcccagatcaccaatcccaggtttctat
ctctgttccctctgttatttcttcattttcctcactaccctactctgtcc
ctggacccctgctagataaatcaaagggggctggggctggggctggggaa
gataggacagggtaacagtgcttgctgctcctgcaaaggacctgggtgca
gatctcagcacccacacagtgacttgcatgacctgcatgcaagtccagag
ccaggggattcaatgctctattgccctcttctggcttttgcggactcctg
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacaaaaaagtacagaggagagagagagagagacagatagagag
agagagagagagagagatagagagacagaacaataaagagaatctaaccg
ctgtgcattccggattgttccccatccttctcctatttcctgatggatgt
tgctatgaacatctaccatttacaaggctggtgtgggtgacgtgcatatg
gcctttcccgtatccctctgggcgcgacacttctagaaactatggttaga
agcccttctcttaatcctgacctgc

gaattcacttggttcaaggaggttttggcttgtttgtttgttttgttttg
aagctgtaattcaacataaagggaatgagagaaggttgtggggggaaaaa
aaggaatgctggatggatctatccaataaaaagaatctaacacatggaca
catggagagtcgggggtagagcgagaaaagtcacatttgtgacacaaaca
acactgtaggctttggggtgaaaactcttgctatattgaactcatttcac
ctctcagagtcaaaagcaaagagatctcactgcaccaggcctggtgtttc
aaaacctgcagccttagccacgccagcttatagccaccaaagggctttgg
aaggcttaaggcagcctggcatgaaaggagttacataagttaccaggctg
gtccttcccagagtctcctggaaaagtacacttttttttcactacacaaa
aggaaagtaggctgtttctgccccacgatgtgatgtgcctttcacttaaa
gtcagtaaaacctggttgcaggcaccatgggaagcctgaagagtgtctgc
atcacggggacacggggacacaaaagcaagccgagatgcgaaagccatct
agcgaagccctcggcggagcttggcaggtacaggccgctggcagggaagg
aagatcactgtgtacacaaagaaagaagccagaggagtcagttgctcggg
agccaggcccgtagccccacagatgatttcctcatctgtgcagtgggtac
ggactggaaatagaaaaggaaccaacagccgagcagagctgccgcagacg
gctttgcctcagttctccacaggaagagaacaaggatgcctgcccatgta
tactttgctatccctttctttcctgcttgctacttagagagacgatgaga
acctaaacctgggaccaccccaggactgtgctccacccagcactccgaga
cagctcctgtcaggtgggtgtggggccatgccctcaccattcagaaagat
catttttatcagcactcaactcatcagctcactgagaattgaaagacaac
agatcactggacttgtcatatctatttcgtcatctctttccaatctaact
gttttcttctcccagccaacccatcctaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108154067_108155277
seq2: B6Ng01-336P16.b_50_1274

seq1  GAATTCAATACCAAACAACAGATGAATGGATAGAGAAAATGTGATACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACCAAACAACAGATGAATGGATAGAGAAAATGTGATACATA  50

seq1  TTTGCAATAGGCTATTACTTAGCCATTAAAAAGGATACAATCCTGCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATAGGCTATTACTTAGCCATTAAAAAGGATACAATCCTGCTGTT  100

seq1  TGCTGCAACAAGAATAGACCAGGAGGACATTCTGTTTAGTAAAAGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAACAAGAATAGACCAGGAGGACATTCTGTTTAGTAAAAGAGTCT  150

seq1  AGACATAAAGCATTGTAGTATATGACCTTGCTCATATGTACTACTTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAAGCATTGTAGTATATGACCTTGCTCATATGTACTACTTGTGG  200

seq1  AAGGTGACCAGACATAAGCAGTGTTGGGTGGTGGGCAATTGTCAGAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACCAGACATAAGCAGTGTTGGGTGGTGGGCAATTGTCAGAGAGT  250

seq1  GGGAAGAAAAGGCAGGGAATAGGTTAGTTAAGGAGTGTGAGCTGGCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAAAGGCAGGGAATAGGTTAGTTAAGGAGTGTGAGCTGGCCTTG  300

seq1  ACCCTGAGGCATGGCAAAGCCTTCCTTTGGTCCAAGGGTGGATACTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGGCATGGCAAAGCCTTCCTTTGGTCCAAGGGTGGATACTGGCA  350

seq1  GTTCGTGCAGAAAATGTCTACCATAGCTTTCTCCTTCTGAGTGTTTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTGCAGAAAATGTCTACCATAGCTTTCTCCTTCTGAGTGTTTATGG  400

seq1  TCTGAGGACTGTGCCCTTACAGGGACTGCTTCTACTGAGATTAGCTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACTGTGCCCTTACAGGGACTGCTTCTACTGAGATTAGCTAAAC  450

seq1  CTGTTCTTTTTTTACAGCTGTATACCATAAACCTTCTTCCTTGTTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTTTTTTACAGCTGTATACCATAAACCTTCTTCCTTGTTCATCT  500

seq1  GTATGTAATAACACCATCTCTTTGCACAGCTGTATGCAATAACCAACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAATAACACCATCTCTTTGCACAGCTGTATGCAATAACCAACCCT  550

seq1  GCGCCCAGTCTGGTCAGCCCTGTTTAACAAACCTGCTGACCTTTCAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCAGTCTGGTCAGCCCTGTTTAACAAACCTGCTGACCTTTCAGGAT  600

seq1  GCTGAGGCATCTCCAGCTGATAGCCCAGATCACCAATCCCAGGTTTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCATCTCCAGCTGATAGCCCAGATCACCAATCCCAGGTTTCTAT  650

seq1  CTCTGTTCCCTCTGTTATTTCTTCATTTTCCTCACTACCCTACTCTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCCCTCTGTTATTTCTTCATTTTCCTCACTACCCTACTCTGTCC  700

seq1  CTGGACCCCTGCTAGATAAATCAAAGGGGGCTGGGGCTGGGGCTGGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCCCTGCTAGATAAATCAAAGGGGGCTGGGGCTGGGGCTGGGGAA  750

seq1  GATAGGACAGGGTAACAGTGCTTGCTGCTCCTGCAAAGGACCTGGGTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGACAGGGTAACAGTGCTTGCTGCTCCTGCAAAGGACCTGGGTGCA  800

seq1  GATCTCAGCACCCACACAGTGACTTGCATGACCTGCATGCAAGTCCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGCACCCACACAGTGACTTGCATGACCTGCATGCAAGTCCAGAG  850

seq1  CCAGGGGATTCAATGCTCTATTGCCCTCTTCTGGCTTTTGCGGACTCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGATTCAATGCTCTATTGCCCTCTTCTGGCTTTTGCGGACTCCTG  900

seq1  CACACACACACACACACACACACACACACACACACACACACACACACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACACACA  950

seq1  CACACACACAAAAAAGTAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAG  1000
      |||||||||||||||||| |||||||||||||||||||| ||| ||||||
seq2  CACACACACAAAAAAGTACAGAGGAGAGAGAGAGAGAGACAGATAGAGAG  1000

seq1  AGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  1050
      |||||||         |||||||||| ||||||| |||   | | |||||
seq2  AGAGAGA---------GAGAGAGAGATAGAGAGACAGAACAATAAAGAGA  1041

seq1  GAGAAAACAGCTGTGCATT-CGGATTGTT-CCCACTCTTCTCCTATT--C  1096
       |   ||| |||||||||| ||||||||| ||||  |||||||||||  |
seq2  -ATCTAACCGCTGTGCATTCCGGATTGTTCCCCATCCTTCTCCTATTTCC  1090

seq1  TGATTGATGTTGCTATGAACAT---TCACTTACAA-GCTGTTGT--GTGA  1140
      |||| |||||||||||||||||    || |||||| |||| |||  ||||
seq2  TGATGGATGTTGCTATGAACATCTACCATTTACAAGGCTGGTGTGGGTGA  1140

seq1  C-TGC-TATG--CTTTCC--TTTCTCT-TGTGC---AGACATCTAGAAAT  1180
      | ||| ||||  ||||||  | || || || ||   | || |||||||| 
seq2  CGTGCATATGGCCTTTCCCGTATCCCTCTGGGCGCGACACTTCTAGAAA-  1189

seq1  GTAT-GTATGAAGC----TTCTTAATTCTGACCTGC  1211
       ||| ||  |||||     ||||||| |||||||||
seq2  CTATGGTTAGAAGCCCTTCTCTTAATCCTGACCTGC  1225


seq1: chr6_108276301_108277440
seq2: B6Ng01-336P16.g_68_1197 (reverse)

seq1  ATTAGGAAGGGGTTGCTTGGGAGAAGAAAACAGTGAGATGGGAAGAAAGA  50
      |||||| | ||||||  ||||||||||||||||| |||| |   ||||||
seq2  ATTAGG-ATGGGTTGGCTGGGAGAAGAAAACAGTTAGATTG---GAAAGA  46

seq1  -ATGACGAAATAGATAATGAACAAAGTCCAGTGATCTGTTTGTCTTTAAA  99
       |||||||||||||| ||||   ||||||||||||||| |||||||| ||
seq2  GATGACGAAATAGAT-ATGA--CAAGTCCAGTGATCTG-TTGTCTTTCAA  92

seq1  TATCTCAGTGAGGCTGATGAGTTTGAGTGCTGATTAAAAATGATCTTTTC  149
      | ||||||||| ||||||||| ||||||||||| ||||||||||| ||||
seq2  T-TCTCAGTGA-GCTGATGAG-TTGAGTGCTGA-TAAAAATGATC-TTTC  137

seq1  TGAATGGTGAGGGCATGGCCCCACACCCACCTGACAGGAGCTGTCTCGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTGAGGGCATGGCCCCACACCCACCTGACAGGAGCTGTCTCGGA  187

seq1  GTGCTGGGTGGAGCACAGTCCTGGGGTGGT-CCAGG-TTAGGTTCTCATC  247
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  GTGCTGGGTGGAGCACAGTCCTGGGGTGGTCCCAGGTTTAGGTTCTCATC  237

seq1  GTCTCTCTAAGTAGCAAGCAGGAAAGAAAGGGATAGCAAAGTATACATGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTAAGTAGCAAGCAGGAAAGAAAGGGATAGCAAAGTATACATGG  287

seq1  GCAGGCATCCTTGTTCTCTTCCTGTGGAGAACTGAGGCAAAGCCGTCTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATCCTTGTTCTCTTCCTGTGGAGAACTGAGGCAAAGCCGTCTGC  337

seq1  GGCAGCTCTGCTCGGCTGTTGGTTCCTTTTCTATTTCCAGTCCGTACCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCTGCTCGGCTGTTGGTTCCTTTTCTATTTCCAGTCCGTACCCA  387

seq1  CTGCACAGATGAGGAAATCATCTGTGGGGCTACGGGCCTGGCTCCCGAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGATGAGGAAATCATCTGTGGGGCTACGGGCCTGGCTCCCGAGC  437

seq1  AACTGACTCCTCTGGCTTCTTTCTTTGTGTACACAGTGATCTTCCTTCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTCCTCTGGCTTCTTTCTTTGTGTACACAGTGATCTTCCTTCCC  487

seq1  TGCCAGCGGCCTGTACCTGCCAAGCTCCGCCGAGGGCTTCGCTAGATGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCGGCCTGTACCTGCCAAGCTCCGCCGAGGGCTTCGCTAGATGGC  537

seq1  TTTCGCATCTCGGCTTGCTTTTGTGTCCCCGTGTCCCCGTGATGCAGACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGCATCTCGGCTTGCTTTTGTGTCCCCGTGTCCCCGTGATGCAGACA  587

seq1  CTCTTCAGGCTTCCCATGGTGCCTGCAACCAGGTTTTACTGACTTTAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGGCTTCCCATGGTGCCTGCAACCAGGTTTTACTGACTTTAAGT  637

seq1  GAAAGGCACATCACATCGTGGGGCAGAAACAGCCTACTTTCCTTTTGTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCACATCACATCGTGGGGCAGAAACAGCCTACTTTCCTTTTGTGT  687

seq1  AGTGAAAAAAAAGTGTACTTTTCCAGGAGACTCTGGGAAGGACCAGCCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAAAAAGTGTACTTTTCCAGGAGACTCTGGGAAGGACCAGCCTG  737

seq1  GTAACTTATGTAACTCCTTTCATGCCAGGCTGCCTTAAGCCTTCCAAAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTATGTAACTCCTTTCATGCCAGGCTGCCTTAAGCCTTCCAAAGC  787

seq1  CCTTTGGTGGCTATAAGCTGGCGTGGCTAAGGCTGCAGGTTTTGAAACAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTGGCTATAAGCTGGCGTGGCTAAGGCTGCAGGTTTTGAAACAC  837

seq1  CAGGCCTGGTGCAGTGAGATCTCTTTGCTTTTGACTCTGAGAGGTGAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGGTGCAGTGAGATCTCTTTGCTTTTGACTCTGAGAGGTGAAAT  887

seq1  GAGTTCAATATAGCAAGAGTTTTCACCCCAAAGCCTACAGTGTTGTTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAATATAGCAAGAGTTTTCACCCCAAAGCCTACAGTGTTGTTTGT  937

seq1  GTCACAAATGTGACTTTTCTCGCTCTACCCCCGACTCTCCATGTGTCCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAATGTGACTTTTCTCGCTCTACCCCCGACTCTCCATGTGTCCAT  987

seq1  GTGTTAGATTCTTTTTATTGGATAGATCCATCCAGCATTCCTTTTTTTCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGATTCTTTTTATTGGATAGATCCATCCAGCATTCCTTTTTTTCC  1037

seq1  CCCCACAACCTTCTCTCATTCCCTTTATGTTGAATTACAGCTTCAAAACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAACCTTCTCTCATTCCCTTTATGTTGAATTACAGCTTCAAAACA  1087

seq1  AAACAAACAAACAAGCCAAAACCTCCTTGAACCAAGTGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAGCCAAAACCTCCTTGAACCAAGTGAATTC  1130


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