BAC Information

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BAC

Clone NameB6Ng01-337B06
Chromosome6 (Build37)8 (Build37)
Map Location 94,967,978 - 94,969,06271,803,349 - 71,803,805
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMagi1, LOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276
Downstream geneLOC100043680, Kbtbd8, LOC435912, Suclg2, LOC665886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337B06.bB6Ng01-337B06.g
ACCGA121812GA121813
length1,079255
definitionB6Ng01-337B06.b B6Ng01-337B06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,967,978 - 94,969,062)(71,803,349 - 71,803,805)
sequence
gaattcaccttcatctagaggcagtgagcttcaaagggtggctgccaagg
ttctcacacccctgaatgctgtcagagagccttcagatgtccccatgtgt
tccgccattgtgcctgtactcattgtcattcatcaagacacccgttctca
tgtcagctcattcaatgtgacatttgctttcactttcctttctggggcaa
agtccttttgagcctcaggaatgccggttatggcataattattactgctt
tgagtaatatgccttggtgcattctgatttaatttagggagaaagaattt
catgagtgttctatgggttcttttgtttctctggtagaagtagtactggg
taaggaaaattcagccttctacattctttgataggaaaaccaggccctta
acttaagtaaaaattaatttttactactgggccagtgagaccgtattttg
atattttaataactcagtggttttagaagatggctgtgtaaaaattttac
aaaagctaagatcttcttcttagaagaggatatacaaatgtgttcagagt
attaggtatactttcagatgtacatggacccagtgaaaactctgccgtgt
gtccttgagcagtgttgagtgaaccttctgggataagatggttctgtcag
ctatgtccaggactagatactccttagctgctgatttgtaagacaagatc
ttgttaggtagcctaggctaggctagaactgtgcagccctggctggcctt
caactaacaatcattcattctgcttcagtttccccagcgccatgattata
aacaaataacacatagactagcctgaaactggagtttggcaaaggagggt
ctgcacatgtatgggcacatgcatgtgaagggcagaggtcaacctcagat
cattccaaaaggctgtccacgtttatgtgttgtttgtttttttgtttatt
gtgacagagctcctcactgggtctggggctgatcattaggttagattgac
tggcaaataagccccagaaattcaggtcccacttcagagctgggatacaa
cagctggtgtgtcatcatgcttagctttt

agctcctcaacaatatgaactgaccagtatcccccggagctcgtgtctct
agctgcatacgtagcagaagatggcctagtcagccatcactgggaagaga
ggccccttggtcttgcaaactttatatgcctcagtagaggggaatgccag
ggccaagaagtgggagtgggtgggtaggggagcagggcgggaggaaggta
taggggactttcaggatagcatttgaaatgtatataaagaaaatatctaa
taaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_94967978_94969062
seq2: B6Ng01-337B06.b_45_1123

seq1  GAATTCACCTTCATCTAGAGGCAGTGAGCTTCAAAGGGTGGCTGCCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTCATCTAGAGGCAGTGAGCTTCAAAGGGTGGCTGCCAAGG  50

seq1  TTCTCACACCCCTGAATGCTGTCAGAGAGCCTTCAGATGTCCCCATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACACCCCTGAATGCTGTCAGAGAGCCTTCAGATGTCCCCATGTGT  100

seq1  TCCGCCATTGTGCCTGTACTCATTGTCATTCATCAAGACACCCGTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCATTGTGCCTGTACTCATTGTCATTCATCAAGACACCCGTTCTCA  150

seq1  TGTCAGCTCATTCAATGTGACATTTGCTTTCACTTTCCTTTCTGGGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCTCATTCAATGTGACATTTGCTTTCACTTTCCTTTCTGGGGCAA  200

seq1  AGTCCTTTTGAGCCTCAGGAATGCCGGTTATGGCATAATTATTACTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTTGAGCCTCAGGAATGCCGGTTATGGCATAATTATTACTGCTT  250

seq1  TGAGTAATATGCCTTGGTGCATTCTGATTTAATTTAGGGAGAAAGAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAATATGCCTTGGTGCATTCTGATTTAATTTAGGGAGAAAGAATTT  300

seq1  CATGAGTGTTCTATGGGTTCTTTTGTTTCTCTGGTAGAAGTAGTACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGTTCTATGGGTTCTTTTGTTTCTCTGGTAGAAGTAGTACTGGG  350

seq1  TAAGGAAAATTCAGCCTTCTACATTCTTTGATAGGAAAACCAGGCCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAATTCAGCCTTCTACATTCTTTGATAGGAAAACCAGGCCCTTA  400

seq1  ACTTAAGTAAAAATTAATTTTTACTACTGGGCCAGTGAGACCGTATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGTAAAAATTAATTTTTACTACTGGGCCAGTGAGACCGTATTTTG  450

seq1  ATATTTTAATAACTCAGTGGTTTTAGAAGATGGCTGTGTAAAAATTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAATAACTCAGTGGTTTTAGAAGATGGCTGTGTAAAAATTTTAC  500

seq1  AAAAGCTAAGATCTTCTTCTTAGAAGAGGATATACAAATGTGTTCAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTAAGATCTTCTTCTTAGAAGAGGATATACAAATGTGTTCAGAGT  550

seq1  ATTAGGTATACTTTCAGATGTACATGGACCCAGTGAAAACTCTGCCGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTATACTTTCAGATGTACATGGACCCAGTGAAAACTCTGCCGTGT  600

seq1  GTCCTTGAGCAGTGTTGAGTGAACCTTCTGGGATAAGATGGTTCTGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGAGCAGTGTTGAGTGAACCTTCTGGGATAAGATGGTTCTGTCAG  650

seq1  CTATGTCCAGGACTAGATACTCCTTAGCTGCTGATTTGTAAGACAAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCCAGGACTAGATACTCCTTAGCTGCTGATTTGTAAGACAAGATC  700

seq1  TTGTTAGGTAGCCTAGGCTAGGCTAGAACTGTGCAGCCCTGGCTGGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGGTAGCCTAGGCTAGGCTAGAACTGTGCAGCCCTGGCTGGCCTT  750

seq1  CAACTAACAATCATTCATTCTGCTTCAGTTTCCCCAGCGCCATGATTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAACAATCATTCATTCTGCTTCAGTTTCCCCAGCGCCATGATTATA  800

seq1  AACAAATAACACATAGACTAGCCTGAAACTGGAGTTTGGCAAAGGAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAACACATAGACTAGCCTGAAACTGGAGTTTGGCAAAGGAGGGT  850

seq1  CTGCACATGTATGGGCACATGCATGTGAAGGGCAGAGGTCAACCTCAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACATGTATGGGCACATGCATGTGAAGGGCAGAGGTCAACCTCAGAT  900

seq1  CATTCCAAAAGGCTGTCCACGTTTATGTGTTTGTTTGTTTTTTTGTTTAT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATTCCAAAAGGCTGTCCACGTTTATGTG-TTGTTTGTTTTTTTGTTTAT  949

seq1  TGTGACAGAGCTCCTCACTGGGTCTTGGGGCTGATCATTAGGTTAGATTG  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTGACAGAGCTCCTCACTGGGTC-TGGGGCTGATCATTAGGTTAGATTG  998

seq1  ACTGGCAAATAAGCCCCAGAAATTCCAGTCCCCACTTTCCAAGAGCTGGG  1050
      |||||||||||||||||||||||| |||  |||||||    |||||||||
seq2  ACTGGCAAATAAGCCCCAGAAATT-CAGGTCCCACTT---CAGAGCTGGG  1044

seq1  ATTACAACAGCT-GTGTGTCATCATGCCTAGCTTTT  1085
      | |||||||||| |||||||||||||| ||||||||
seq2  A-TACAACAGCTGGTGTGTCATCATGCTTAGCTTTT  1079


seq1: chr8_71803349_71803805
seq2: B6Ng01-337B06.g_80_327 (reverse)

seq1  TTTTATTAGATATTTTCTTTTTTTTTTTTTTTTTTTTTAAAGATTTATTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACATACCAGAAGAGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGTCAGATCTTGTTACGGATGGTTGTAAGCCACCATGTGGTTGCCGGGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCATCTCACCAGCCCAGATATTTTCTTTATTTACATTTCAAATGCTATCC  250
         | | |       ||||||||||||||| |||||||||||||||||||
seq2  ---TTTTA-----TTAGATATTTTCTTTATATACATTTCAAATGCTATCC  42

seq1  CAAAAGTTCCCTATACCCTTCCCCCCACCCTGCTCCCCTACCCAGCCACT  300
        ||||| ||||||| |||||| ||| ||||||||||||||||| |||||
seq2  TGAAAGTCCCCTATA-CCTTCCTCCCGCCCTGCTCCCCTACCCACCCACT  91

seq1  CCCACTTCATGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGC  350
      |||||||| |||||||||||||||||| ||||| ||||||||||||||||
seq2  CCCACTTCTTGGCCCTGGCATTCCCCTCTACTGAGGCATATAAAGTTTGC  141

seq1  AAGACCTAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCTTCTG  400
      |||||| ||||||||||||||||| ||||||| |||||||||||||||||
seq2  AAGACCAAGGGGCCTCTCTTCCCAGTGATGGCTGACTAGGCCATCTTCTG  191

seq1  CTACATATGCAGATAGAAACATGAGCTCTGGGGGGTACTGGTTAGTTCAT  450
      |||| ||||||| |||| ||| |||||| ||||| ||||||| |||||||
seq2  CTACGTATGCAGCTAGAGACACGAGCTCCGGGGGATACTGGTCAGTTCAT  241

seq1  ATTGTTG  457
      |||||||
seq2  ATTGTTG  248


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