BAC Information

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BAC

Clone NameB6Ng01-339A15
Chromosome6 (Build37)
Map Location 75,175,679 - 75,339,232
singlet/doubletdoublet
Overlap geneLOC621306, LOC100042942, LOC668143
Upstream geneEG668132, LOC668136
Downstream geneEG668145, EG546907, LOC100042952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339A15.bB6Ng01-339A15.g
ACCGA123147GA123148
length1,147989
definitionB6Ng01-339A15.b B6Ng01-339A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,338,076 - 75,339,232)(75,175,679 - 75,176,671)
sequence
gaattcacaaaatgaaattcaaaagatttcaaagcatatctttaacaaac
tttaatggcctacaaagaaaaaaaaaagacaagttcattaaataaatgtt
taaacatttgttttcagtttaacaaattaccttttaaattatgtaattat
attcacacattgagtatattgcatgcagatgcagttcctcatacaagcat
cacatccccctagagtgtgctgaaaacccatgtcaggtcctggataagag
caatatctactctatcatagagcaatttctccatccccagtaagtaattt
ttaaaaatcagcaaaatccaaaaaaaaacccaaaaacaaacaaacaaaca
aaaaacagattaatgtagatttacagaatgttatatcttaaaagatacca
aaagacatgtaaggcaaatgaccattagaaatctaatttgatagcttata
cagatgaagagaagtttatttgtatttttcaaattttcatgtctgtgtga
tgttcatcacaaggcttgtatatccagttctactaacaacctttgtgctt
tgccaaacaaatttcatctagtcaaccactggatatactgatattgctgt
tcctaaacttttgatgttatagttttcaaactagagaataagctctttgt
agtagtaactagaaagtttgtaacccagctcttagaacagttttagatat
gtactacttactcaggaaacaactatttaccaaattctctgaggatagtt
gcatgaatcagggtctctgttattgtatccctatttattctggaggtttt
atttttatttttattttcattgctaagggcaagtctaggtggctttatct
gcgtggcaaatgctcagccactgagttgcacatccagcctcactccttcc
attttaaaacatgcaggaataaaaaatcagattcattcagagaagtagca
acagttgtatcttcagcagttattctttagagcataaaaacacatggtat
gattaaaactaagatcaatccagcttctgtcatgtcttttaccaaacaat
atgcaataataccctggagaaaggcccttttcagttccagatgagtcttg
cctcttctcaagtttcaatattgcttgctagaagattatgctcatat

gaattctatattaagtggtatattaatgacttagaaagaatatagggtca
ttttatagtcatactatttatataaaaaagatcctaatattctttccttt
agacttttcagtacaaaaaaatcaatattcagaacatatagaaaaagata
tcctatattctatgtctcactgcaacaatatatatatatatatatatata
cttattatgtacatatatatgtacatatatgtgtattgtgtacttactat
gtacacatgtatgtatatatatataatcctcatatactaaaatttgatac
tcaagcttttttttgttttgccaattgttataatccataagccaccaaat
tctatacatattggctatttgaaactgtaattttaaaaaaactgtttttt
ttttttccaggactaaagtgaaattgaccaactctgttgatactgtcaac
tagaaatggtaagctgcattctatgatgtagaaatgaggatgctgatctt
ggttcccagatcccaccgagactagtctgcacaagtgagagtgtggacta
cagaagctaacaggcaggagccacagagcttctgaggtcgacctctcttc
gtactccagacacccaggcaccttccctgccagaggagaggtatctgccc
ggcccaggaggactttgctggagtacctgagggagccatctttgttcctg
gatcccgctgagactagtctgcacaggtgagagtgtggactacagaagct
aacagcttctgggatggaccatgtttcagccttcatcttctgccaggagg
caagtccgaaagccagatatctgtgcaccttccctgcaagaggagagctt
gcctgcagagagtactctaaccactaaaactcaggagagatctagtctcc
aaggtctgctgatagaggctaacacaatcacaagaggaacaagctctaac
cagagacaactatacattgtctcagagattaccagatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_75338076_75339232
seq2: B6Ng01-339A15.b_47_1193 (reverse)

seq1  ATATGAGCATAAAACATCTCCTTAGGAAAGCAA-ATATGAACTGGAGAAG  49
      |||||||||||    |||| ||   | |||||| ||   |||| ||||| 
seq2  ATATGAGCATA----ATCTTCT--AGCAAGCAATATTGAAACTTGAGAA-  43

seq1  GAAGCAGGAACTCATTCTGGGAACTGAAAAGGG-CTTTCT-CAAGGTA-T  96
      || ||| | ||||| ||| |||||||||||||| |||||| || |||| |
seq2  GAGGCAAG-ACTCA-TCT-GGAACTGAAAAGGGCCTTTCTCCAGGGTATT  90

seq1  ATTGCATAATTGTTTG--TAAAGACATTGACAAGGAAGCTGGGATTGAAT  144
      ||||||| ||||||||   ||||||| |||||  |||||| |||||| ||
seq2  ATTGCAT-ATTGTTTGGTAAAAGACA-TGACA--GAAGCT-GGATTG-AT  134

seq1  CCTTTAGTTTTAATCATACCATGTG-TTTTATGCTCTTAAAGATAACTGC  193
      |  |||||||||||||||||||||| ||||||||||| ||  ||||||||
seq2  C--TTAGTTTTAATCATACCATGTGTTTTTATGCTCTAAAGAATAACTGC  182

seq1  TGAAGATACAACTGTTTGCTACTTCTCTGAATGAATCTGATTTTTTATTC  243
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGAAGATACAACTG-TTGCTACTTCTCTGAATGAATCTGATTTTTTATTC  231

seq1  CTGCATGTTTTAAAATGG-AGGAGTGAGGCTGGATGTGCAACTCAGTGGC  292
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGCATGTTTTAAAATGGAAGGAGTGAGGCTGGATGTGCAACTCAGTGGC  281

seq1  TGAGCATTTGCCACGCAGATAAAGCCACCTAGACTTGCCCTTAGCAATGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTGCCACGCAGATAAAGCCACCTAGACTTGCCCTTAGCAATGA  331

seq1  AAATAAAAATAAAAATAAAACCTCCAGAATAAATA-GGATACAATAACAG  391
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATAAAAATAAAAATAAAACCTCCAGAATAAATAGGGATACAATAACAG  381

seq1  AGACCCTGATTCATGCAACTATCCTCAGAGAATTTGGTAAATAGTTGTTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGATTCATGCAACTATCCTCAGAGAATTTGGTAAATAGTTGTTT  431

seq1  CCTGAGTAAGTAGTACATATCTAAAACTGTTCTAAGAGCTGGGTTACAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTAAGTAGTACATATCTAAAACTGTTCTAAGAGCTGGGTTACAAA  481

seq1  CTTTCTAGTTACTACTACAAAGAGCTTATTCTCTAGTTTGAAAACTATAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGTTACTACTACAAAGAGCTTATTCTCTAGTTTGAAAACTATAA  531

seq1  CATCAAAAGTTTAGGAACAGCAATATCAGTATATCCAGTGGTTGACTAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAGTTTAGGAACAGCAATATCAGTATATCCAGTGGTTGACTAGA  581

seq1  TGAAATTTGTTTGGCAAAGCACAAAGGTTGTTAGTAGAACTGGATATACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTGTTTGGCAAAGCACAAAGGTTGTTAGTAGAACTGGATATACA  631

seq1  AGCCTTGTGATGAACATCACACAGACATGAAAATTTGAAAAATACAAATA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGTGATGAACATCACACAGACATGAAAATTTGAAAAATACAAATA  681

seq1  AACTTCTCTTCATCTGTATAAGCTATCAAATTAGATTTCTAATGGTCATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCTTCATCTGTATAAGCTATCAAATTAGATTTCTAATGGTCATT  731

seq1  TGCCTTACATGTCTTTTGGTATCTTTTAAGATATAACATTCTGTAAATCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTACATGTCTTTTGGTATCTTTTAAGATATAACATTCTGTAAATCT  781

seq1  ACATTAATCTGTTTTTTGTTTGTTTGTTTGTTTTTGGGTTTTTTTTTGGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATCTGTTTTTTGTTTGTTTGTTTGTTTTTGGGTTTTTTTTTGGA  831

seq1  TTTTGCTGATTTTTAAAAATTACTTACTGGGGATGGAGAAATTGCTCTAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGATTTTTAAAAATTACTTACTGGGGATGGAGAAATTGCTCTAT  881

seq1  GATAGAGTAGATATTGCTCTTATCCAGGACCTGACATGGGTTTTCAGCAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGTAGATATTGCTCTTATCCAGGACCTGACATGGGTTTTCAGCAC  931

seq1  ACTCTAGGGGGATGTGATGCTTGTATGAGGAACTGCATCTGCATGCAATA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGGGGATGTGATGCTTGTATGAGGAACTGCATCTGCATGCAATA  981

seq1  TACTCAATGTGTGAATATAATTACATAATTTAAAAGGTAATTTGTTAAAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAATGTGTGAATATAATTACATAATTTAAAAGGTAATTTGTTAAAC  1031

seq1  TGAAAACAAATGTTTAAACATTTATTTAATGAACTTGTCTTTTTTTTTTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAAATGTTTAAACATTTATTTAATGAACTTGTCTTTTTTTTTTC  1081

seq1  TTTGTAGGCCATTAAAGTTTGTTAAAGATATGCTTTGAAATCTTTTGAAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGCCATTAAAGTTTGTTAAAGATATGCTTTGAAATCTTTTGAAT  1131

seq1  TTCATTTTGTGAATTC  1157
      ||||||||||||||||
seq2  TTCATTTTGTGAATTC  1147


seq1: chr6_75175679_75176671
seq2: B6Ng01-339A15.g_64_1052

seq1  GAATTCTATATTAAGTGGTATATTAATGACTTAGAAAGAATATAGGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTAAGTGGTATATTAATGACTTAGAAAGAATATAGGGTCA  50

seq1  TTTTATAGTCATACTATTTATATAAAAAAGATCCTAATATTCTTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGTCATACTATTTATATAAAAAAGATCCTAATATTCTTTCCTTT  100

seq1  AGACTTTTCAGTACAAAAAAATCAATATTCAGAACATATAGAAAAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTCAGTACAAAAAAATCAATATTCAGAACATATAGAAAAAGATA  150

seq1  TCCTATATTCTATGTCTCACTGCAACAATATATATATATATATATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATATTCTATGTCTCACTGCAACAATATATATATATATATATATATA  200

seq1  CTTATTATGTACATATATATGTACATATATGTGTATTGTGTACTTACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATGTACATATATATGTACATATATGTGTATTGTGTACTTACTAT  250

seq1  GTACACATGTATGTATATATATATAATCCTCATATACTAAAATTTGATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACATGTATGTATATATATATAATCCTCATATACTAAAATTTGATAC  300

seq1  TCAAGCTTTTTTTTGTTTTGCCAATTGTTATAATCCATAAGCCACCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTTTTTTTGTTTTGCCAATTGTTATAATCCATAAGCCACCAAAT  350

seq1  TCTATACATATTGGCTATTTGAAACTGTAATTTTAAAAAAACTGTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACATATTGGCTATTTGAAACTGTAATTTTAAAAAAACTGTTTTTT  400

seq1  TTTTTTCCAGGACTAAAGTGAAATTGACCAACTCTGTTGATACTGTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCAGGACTAAAGTGAAATTGACCAACTCTGTTGATACTGTCAAC  450

seq1  TAGAAATGGTAAGCTGCATTCTATGATGTAGAAATGAGGATGCTGATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGGTAAGCTGCATTCTATGATGTAGAAATGAGGATGCTGATCTT  500

seq1  GGTTCCCAGATCCCACCGAGACTAGTCTGCACAAGTGAGAGTGTGGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAGATCCCACCGAGACTAGTCTGCACAAGTGAGAGTGTGGACTA  550

seq1  CAGAAGCTAACAGGCAGGAGCCACAGAGCTTCTGAGGTCGACCTCTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTAACAGGCAGGAGCCACAGAGCTTCTGAGGTCGACCTCTCTTC  600

seq1  GTACTCCAGACACCCAGGCACCTTCCCTGCCAGAGGAGAGGTATCTGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCAGACACCCAGGCACCTTCCCTGCCAGAGGAGAGGTATCTGCCC  650

seq1  GGCCCAGGAGGACTTTGCTGGAGTACCTGAGGGAGCCATCTTTGTTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGGAGGACTTTGCTGGAGTACCTGAGGGAGCCATCTTTGTTCCTG  700

seq1  GATCCCGCTGAGACTAGTCTGCACAGGTGAGAGTGTGGACTACAGAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCGCTGAGACTAGTCTGCACAGGTGAGAGTGTGGACTACAGAAGCT  750

seq1  AACAGCTTCTGGGATGGACCATGTTTCAGGCCTTCATCTTCTGCCAGGAG  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AACAGCTTCTGGGATGGACCATGTTTCA-GCCTTCATCTTCTGCCAGGAG  799

seq1  GCAAGTCCGAAAGCCAGATATCTGTGCACCTTCCCTGCAAGAGGAGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCCGAAAGCCAGATATCTGTGCACCTTCCCTGCAAGAGGAGAGCT  849

seq1  TGCCTGCAGAGAGTACTCTAACCACTAAAACTCAGGAGAGATCTAGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCAGAGAGTACTCTAACCACTAAAACTCAGGAGAGATCTAGTCTC  899

seq1  CAAGGTCTGCTGATAGAGGCTAACACAATCACAAGAGGAACAAGCTCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCTGCTGATAGAGGCTAACACAATCACAAGAGGAACAAGCTCTAA  949

seq1  CCAGAGACAACTATAACAATTGTCTCCAGAGATTACCAGATGG  993
      |||||||||||||||   ||||||| |||||||||||||||||
seq2  CCAGAGACAACTATA--CATTGTCT-CAGAGATTACCAGATGG  989


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