BAC Information

Click to search

BAC

Clone NameB6Ng01-339B05
Chromosome6 (Build37)
Map Location 109,338,599 - 109,339,730
singlet/doubletsinglet
Overlap genenone
Upstream geneItpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
Downstream geneLOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339B05.bB6Ng01-339B05.g
ACCGA123172GA123173
length9201,151
definitionB6Ng01-339B05.b B6Ng01-339B05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagtataggaagctcgaatcgcttagaagctcttaaagaagca
ttcgaagtgcttagtcatcaaggaaatgcaaatcaaaacatctctgaagt
tccatctttttttaaaaatattttttattattacgtattttcctcaatta
catttagagatctgcaaccctgtaggtgcaacaacattatgaactaacca
gtaccccggagctcttgactctagctgcatatgtatcaaaagacggccta
gtcggtcatcactggaaagagaggcccattggacacaaaaaatgaagttc
catcttataaccatcagaatggctaagattaaaaactcaagagatggcac
atgttaccaatgtggagtgggggggggcacttcattgctggtgggagtgc
aaacttgtactctggtagttctacctgaagactcagcaatacgactcctg
agcatacaccaaaatatgctctaccattccgcaaagacatttgctcatct
atgttcatagcagttttattcattaatagccagaaactgtaaaccaccta
gatgcttcaccactgaagaatggataaagcagttgtggtatacctacaca
atggaatactattcagttataaaaaaaaagacatcacgattttgtaggca
aatggatggaccttaagaatcctgagtgaggtaacccagtcccaaaggac
aagcatggtaagcactcacttaaaagtgaatactagccataaaatacagg
tgccatgttatactgcacagacctaaagaagctaaacaagaaggaaggca
caagcaattatgcttgaatctcacttacaagggggaacaaaataatccta
aaagggcattggaaggagggaactggatggctggggtttggagagagaaa
aggggtttcaggatcaggtt
gaattcttcagacttgagtgtgaatagattatgcaatccttgcaaatgta
cactgttcacctaaaatttggtgttttaatgggaaattttcaattaaacc
cattcaaatagcacagtttcttcctgacaaatcagcacgaagatggggaa
tcctaagtccattaggcaaattcactgagtttcttatgttatgatctaaa
aaccgcacaggtggttgcagaacattcaagcagaagatgattaaaaacac
tccaacaaaccctggtgtgtattattataaacagggaggactctctatgt
gaattcaccgtgacttctattataattgtggggatgtctagggaacaact
ctgtctaaaagcaaaacctgaaccaataattggaatataattatccatta
aggacaagctcccagaaggatgtagtgagggactggaaatggagtacaga
aaagaaagaagtatgccttattatgaaagatatttgcctctatgttttgc
catcaaattcacatgcccattcaatgtttattaattgtctatggctatta
tttggaattcaaataataacaaactcagataattgatattcttttcactg
ataaaactctaccatggtcacaagtgcatctaacttcatctaaagtctca
tgaagaaattaaaagtcatcaagaacataaacaaagtatatcattgccat
ccatccactctataggatctaattgaaatgcacctctttacagtaatgaa
tcaagggcctttaggtattctgtgaacctctagtctggtagtttcacttg
tgaatcatctctcacaatcaggaattttaatagtggaaaagggggtttga
ggatgtagctcagcagtcaactttgtactatactctcagtctaatgggtg
gggaaaatacacaaacaatagactgaaccattctaggctggagttgatgg
caacagtcagtaaagagcttgctatgaaggtatgaagaccctaaggtagg
tcatccagggacacacctcacatgaaaaactgagttatagcatccacacc
atataattcccagctgctgggccaacaggtctttgaagaaattcagtgga
gtttccaggtttcaggtgggagaaatatggctcaaaaattttaggtgggg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109338599_109339730
seq2: B6Ng01-339B05.g_65_1215 (reverse)

seq1  TCCCCACTTAATATTTTTGAAGCACTATTTCTC---ACTG-AACCTGG-A  45
      ||||||| ||| ||||||| |||  ||||||||    ||| ||||||| |
seq2  TCCCCACCTAAAATTTTTG-AGCCATATTTCTCCCACCTGAAACCTGGAA  49

seq1  ACT-CACTGA--TTCTTC-AAGACTGGTTGG-CCAGCAAGCTGGG-ATTA  89
      ||| ||||||  |||||| |||||  ||||| ||||| ||||||| ||||
seq2  ACTCCACTGAATTTCTTCAAAGACCTGTTGGCCCAGC-AGCTGGGAATTA  98

seq1  TAT-GTGTGGATGCTAT-ACTCAGTTTTTCATGTGA-GTGTGT-CCTGGA  135
      ||| ||||||||||||| |||||||||||||||||| |||||| ||||||
seq2  TATGGTGTGGATGCTATAACTCAGTTTTTCATGTGAGGTGTGTCCCTGGA  148

seq1  TGACCTACCTTA-GGTCTTCATACCTTCATAGCAAGCTCTTTACTGACTG  184
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGACCTACCTTAGGGTCTTCATACCTTCATAGCAAGCTCTTTACTGACTG  198

seq1  -TGCCATCAACT-CAGCCTAGAATGGTTCAGTCTATTGTTTGTGTATTTT  232
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGCCATCAACTCCAGCCTAGAATGGTTCAGTCTATTGTTTGTGTATTTT  248

seq1  CCC--ACCATTAGACTGAGAGTATAGTACAAAGTTGACTGCTGAGCTACA  280
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCATTAGACTGAGAGTATAGTACAAAGTTGACTGCTGAGCTACA  298

seq1  TCCTCAAACCCCCTTTTCCACTATTAAAATTCCTGATTGTGAGAGATGAT  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAACCCCCTTTTCCACTATTAAAATTCCTGATTGTGAGAGATGAT  348

seq1  TCACAAGTGAAACTACCAGACTAGAGGTTCACAGAATACCT-AAGGCCCT  379
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCACAAGTGAAACTACCAGACTAGAGGTTCACAGAATACCTAAAGGCCCT  398

seq1  TGATTCATTACTGTAAAGAGGTGCATTTCAATTAGATCCTATAGAGTGGA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATTACTGTAAAGAGGTGCATTTCAATTAGATCCTATAGAGTGGA  448

seq1  TGGATGGCAATGATATACTTTGTTTATGTTCTTGATGACTTTTAATTTCT  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGCAATGATATACTTTGTTTATGTTCTTGATGACTTTTAATTTCT  498

seq1  TCATGAGACTTTAGATGAAGTTAGATGCACTTGTGACCATGGTAGAGTTT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGACTTTAGATGAAGTTAGATGCACTTGTGACCATGGTAGAGTTT  548

seq1  TATCAGTGAAAAGAATATCAATTATCTGAGTTTGTTATTATTTGAATTCC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGAAAAGAATATCAATTATCTGAGTTTGTTATTATTTGAATTCC  598

seq1  AAATAATAGCCATAGACAATTAATAAACATTGAATGGGCATGTGAATTTG  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAGCCATAGACAATTAATAAACATTGAATGGGCATGTGAATTTG  648

seq1  ATGGCAAAACATAGAGGCAAATATCTTTCATAATAAGGCATACTTCTTTC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAAACATAGAGGCAAATATCTTTCATAATAAGGCATACTTCTTTC  698

seq1  TTTTCTGTACTCCATTTCCAGTCCCTCACTACATCCTTCTGGGAGCTTGT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTACTCCATTTCCAGTCCCTCACTACATCCTTCTGGGAGCTTGT  748

seq1  CCTTAATGGATAATTATATTCCAATTATTGGTTCAGGTTTTGCTTTTAGA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATGGATAATTATATTCCAATTATTGGTTCAGGTTTTGCTTTTAGA  798

seq1  CAGAGTTGTTCCCTAGACATCCCCACAATTATAATAGAAGTCACGGTGAA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGTTCCCTAGACATCCCCACAATTATAATAGAAGTCACGGTGAA  848

seq1  TTCACATAGAGAGTCCTCCCTGTTTATAATAATACACACCAGGGTTTGTT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATAGAGAGTCCTCCCTGTTTATAATAATACACACCAGGGTTTGTT  898

seq1  GGAGTGTTTTTAATCATCTTCTGCTTGAATGTTCTGCAACCACCTGTGCG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTTTTAATCATCTTCTGCTTGAATGTTCTGCAACCACCTGTGCG  948

seq1  GTTTTTAGATCATAACATAAGAAACTCAGTGAATTTGCCTAATGGACTTA  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGATCATAACATAAGAAACTCAGTGAATTTGCCTAATGGACTTA  998

seq1  GGATTCCCCATCTTCGTGCTGATTTGTCAGGAAGAAACTGTGCTATTTGA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCCCATCTTCGTGCTGATTTGTCAGGAAGAAACTGTGCTATTTGA  1048

seq1  ATGGGTTTAATTGAAAATTTCCCATTAAAACACCAAATTTTAGGTGAACA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTTAATTGAAAATTTCCCATTAAAACACCAAATTTTAGGTGAACA  1098

seq1  GTGTACATTTGCAAGGATTGCATAATCTATTCACACTCAAGTCTGAAGAA  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATTTGCAAGGATTGCATAATCTATTCACACTCAAGTCTGAAGAA  1148

seq1  TTC  1132
      |||
seq2  TTC  1151