BAC Information

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BAC

Clone NameB6Ng01-340D22
Chromosome6 (Build37)
Map Location 108,583,445 - 108,722,478
singlet/doubletdoublet
Overlap geneBhlhb2
Upstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205
Downstream geneArl8b, Edem1, EG627371, LOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340D22.bB6Ng01-340D22.g
ACCGA124010GA124011
length9431,012
definitionB6Ng01-340D22.b B6Ng01-340D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,721,524 - 108,722,478)(108,583,445 - 108,584,457)
sequence
gaattcattgttactttaatggttgcttgtaaaagttacagtttgtggaa
aatacttcattgagagggctttttgggtgaattttattgagacagaatct
tggtagcccaggctggtccacactcacaatcacctgcatcagccttccaa
gtgctaaggttgcaggtatggtgcatcagtacattcactgttgctctgac
aaccatcacttccttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttctcttctcttcttctt
cctcctcttcctcctcctcctcctcctcctcctcttcttcttcctcttcc
tcttccttctttttttccttctggtgctgtagattggatccaaggcccat
gtgcatgctaagcctatggcctgaccttctccccatctcattcataagct
ttacaggtgtaaatacaaacccttcagaaagcagataacacccccagggc
tccacagcttcctggatagttttctcatacatttaaacatgcattatggg
tatacacttatatgtaggtgcatgtatgcatttatacctattttattctt
ttttagttaactaatttgttttgagacagagtgtcaagaaggcgatattt
gcctcaaacttcccatataggagaggatgagcatgaagtcctgatcttcg
tgtcttgacccaactcagtgcagaaattacatggttgtggggctggagag
atggctcaacatgtgacaatcctcctgcctctgtctacaagtgcttggat
taaaggtgtacactactatgtttgccctgatttggtttttcacttccttg
atacaggaactgatgctcaccaatccaggctgactgcaacacacagtctc
ctgcttcagctcctgagtgctgaatttcccaaatgagaaaaat

gaattccacgggaaattcagactgactgtacttcacgttgagctctgaca
taaaataacttactatcttcaaagttacgtcaagaggaaggatcctccta
tgacttggtgactcaggcatatgatcccagctacttggaaggctaaggtc
aaaggatcacaagttcaaaggcagcctgggcaacttagtcagatcctttc
tccaaataaaaagtaagagctgtgagtataacccagaggtagagcacttg
attgtgacgccaataaggacaaattaaaaggatgggacatcaattcagag
gctgaacagtatttgacctcaaatataagatacatccctttagagttgct
taagttggatggagcaggccatggccatgatttggaatagatccatcctg
tccctaggaaccatatgttcataaaaccaactcctgtcatttctcgcact
tttgttggagttgctgatcactgtgggctagggagtctaagccaggccat
cactgtactccagctccgagctgcaagcctcatccacagaaaggaatata
tggatacagggaaagcagataaaggactagccctctgtcccgctagtttt
tctctggccagggatgcttggattctgtatgatgctcattcttttcattg
gcagcttcgggcagacttgtctgtacccagccataaagagaatccaggta
accatagtcagccacttctcagttcttggcctgaggtacaggctgaatga
gaagccagcagctccatttgtaagtctctcaggatgctacagtccctcag
caccaattccttcagaggaccttccggctgttgtgtcctctggttctgaa
gtgcagacaccatcttatgacacagactgaagtctcttgcagttcacatg
taggtatgtgtatatacagccctctgccaaatgtctttatttgctcaagt
ctcatctgtccttaattccctccataaacatggaagtcatatataaaacc
ttgagccaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108721524_108722478
seq2: B6Ng01-340D22.b_51_993 (reverse)

seq1  ATTTTATCTCATTTTGGGAAAATTCAGCACTCAGGAGGCTGAGGCAGGAG  50
      ||||| ||||||||  || ||||||||||||||||| ||||| |||||| 
seq2  ATTTT-TCTCATTT--GGGAAATTCAGCACTCAGGA-GCTGAAGCAGGA-  45

seq1  GATTGTGTGTTTGAGGTCAGCCTGGAATGGTTAGGTAATAAGGCCCTGTC  100
      || |||||| |||  ||||||||||| |||| ||   || ||  ||||| 
seq2  GACTGTGTG-TTGCAGTCAGCCTGGATTGGTGAG--CATCAGTTCCTGTA  92

seq1  TCAAGGAAG-GAAAAAACAAATTAAGGCCAATATAGTAGTGTACACCTTT  149
      ||||||||| |||||| ||||| | ||| || ||||||||||||||||||
seq2  TCAAGGAAGTGAAAAACCAAATCAGGGCAAACATAGTAGTGTACACCTTT  142

seq1  AATCCCAGCACTTGGGAGACAGAGGCAGGAGGATTGTCACATGTTGAGCC  199
      ||||| ||||||| | ||||||||||||||||||||||||||||||||||
seq2  AATCCAAGCACTT-GTAGACAGAGGCAGGAGGATTGTCACATGTTGAGCC  191

seq1  ATCTCTCCAGCCCCACAACCATGTAATTTTAGCACTGAG-GAGGTCAAGA  248
      |||||||||||||||||||||||||||||  ||||||||   ||||||||
seq2  ATCTCTCCAGCCCCACAACCATGTAATTTCTGCACTGAGTTGGGTCAAGA  241

seq1  CACGAAGGTCAGGACTTCAAGCTCATCCTCTCCTATATGGGAAGTTTGAG  298
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  CACGAAGATCAGGACTTCATGCTCATCCTCTCCTATATGGGAAGTTTGAG  291

seq1  GCAAATATCGCCTTCTTGCCACTCTGTCTCAAAACAAATTAGTTAACTAA  348
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAAATATCGCCTTCTTGACACTCTGTCTCAAAACAAATTAGTTAACTAA  341

seq1  AAAAGAATAAAATAGGTATAAATGCATACATGCACCTACATATAAGTGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATAAAATAGGTATAAATGCATACATGCACCTACATATAAGTGTA  391

seq1  TACCCATAATGCATGTTTAAATGTATGAGAAAACTATCCAGAAAGCTGTG  448
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACCCATAATGCATGTTTAAATGTATGAGAAAACTATCCAGGAAGCTGTG  441

seq1  GAGCCCTGGGGGTGTTATCTGCTTTCTGAAGGGTTTGTATTTACACCTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGGGGGTGTTATCTGCTTTCTGAAGGGTTTGTATTTACACCTGT  491

seq1  AAAGCTTATGAATGAGATGGGGAAAATGTCAGGCCATTGGCTTAGCATGC  548
      ||||||||||||||||||||||| || |||||||||| ||||||||||||
seq2  AAAGCTTATGAATGAGATGGGGAGAAGGTCAGGCCATAGGCTTAGCATGC  541

seq1  ACA-AGGCCTTGGATCCAATCTACAGCACCAAAAAGAAAAAAAGAAAGAA  597
      |||  |||||||||||||||||||||||||| || ||||||||||     
seq2  ACATGGGCCTTGGATCCAATCTACAGCACCAGAAGGAAAAAAAGA-----  586

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  647
       | ||||| ||||| ||||||||||| || || || || || || || ||
seq2  -AGGAAGAGGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGA  635

seq1  AGAAGAAGAAGAAGAAGAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAA  697
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGAAGAAGAAGAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAA  685

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAG  735

seq1  TGATGGTTGTCAGAGCAACAGTGAATGTACTGATGCACCATACCTGCAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTGTCAGAGCAACAGTGAATGTACTGATGCACCATACCTGCAAC  785

seq1  CTTAGCACTTGGAAGGCTGATGCAGGTGATTGTGAGTGTGGACCAGCCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACTTGGAAGGCTGATGCAGGTGATTGTGAGTGTGGACCAGCCTG  835

seq1  GGCTACCAAGATTCTGTCTCAATAAAATTCACCCAAAAAGCCCTCTCAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCAAGATTCTGTCTCAATAAAATTCACCCAAAAAGCCCTCTCAAT  885

seq1  GAAGTATTTTCCACAAACTGTAACTTTTACAAGCAACCATTAAAGTAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATTTTCCACAAACTGTAACTTTTACAAGCAACCATTAAAGTAACA  935

seq1  ATGAATTC  955
      ||||||||
seq2  ATGAATTC  943


seq1: chr6_108583445_108584457
seq2: B6Ng01-340D22.g_67_1078

seq1  GAATTCCACGGGAAATTCAGACTGACTGTACTTCACGTTGAGCTCTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGGAAATTCAGACTGACTGTACTTCACGTTGAGCTCTGACA  50

seq1  TAAAATAACTTACTATCTTCAAAGTTACGTCAAGAGGAAGGATCCTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACTTACTATCTTCAAAGTTACGTCAAGAGGAAGGATCCTCCTA  100

seq1  TGACTTGGTGACTCAGGCATATGATCCCAGCTACTTGGAAGGCTAAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGTGACTCAGGCATATGATCCCAGCTACTTGGAAGGCTAAGGTC  150

seq1  AAAGGATCACAAGTTCAAAGGCAGCCTGGGCAACTTAGTCAGATCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCACAAGTTCAAAGGCAGCCTGGGCAACTTAGTCAGATCCTTTC  200

seq1  TCCAAATAAAAAGTAAGAGCTGTGAGTATAACCCAGAGGTAGAGCACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATAAAAAGTAAGAGCTGTGAGTATAACCCAGAGGTAGAGCACTTG  250

seq1  ATTGTGACGCCAATAAGGACAAATTAAAAGGATGGGACATCAATTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACGCCAATAAGGACAAATTAAAAGGATGGGACATCAATTCAGAG  300

seq1  GCTGAACAGTATTTGACCTCAAATATAAGATACATCCCTTTAGAGTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACAGTATTTGACCTCAAATATAAGATACATCCCTTTAGAGTTGCT  350

seq1  TAAGTTGGATGGAGCAGGCCATGGCCATGATTTGGAATAGATCCATCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGGATGGAGCAGGCCATGGCCATGATTTGGAATAGATCCATCCTG  400

seq1  TCCCTAGGAACCATATGTTCATAAAACCAACTCCTGTCATTTCTCGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGGAACCATATGTTCATAAAACCAACTCCTGTCATTTCTCGCACT  450

seq1  TTTGTTGGAGTTGCTGATCACTGTGGGCTAGGGAGTCTAAGCCAGGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGAGTTGCTGATCACTGTGGGCTAGGGAGTCTAAGCCAGGCCAT  500

seq1  CACTGTACTCCAGCTCCGAGCTGCAAGCCTCATCCACAGAAAGGAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTACTCCAGCTCCGAGCTGCAAGCCTCATCCACAGAAAGGAATATA  550

seq1  TGGATACAGGGAAAGCAGATAAAGGACTAGCCCTCTGTCCCGCTAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACAGGGAAAGCAGATAAAGGACTAGCCCTCTGTCCCGCTAGTTTT  600

seq1  TCTCTGGCCAGGGATGCTTGGATTCTGTATGATGCTCATTCTTTTCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCCAGGGATGCTTGGATTCTGTATGATGCTCATTCTTTTCATTG  650

seq1  GCAGCTTCGGGCAGACTTGTCTGTACCCAGCCATAAAGAGAATCCAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCGGGCAGACTTGTCTGTACCCAGCCATAAAGAGAATCCAGGTA  700

seq1  ACCATAGTCAGCCACTTCTCAGTTCTTGGCCTGAGGTACAGGCTGAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGTCAGCCACTTCTCAGTTCTTGGCCTGAGGTACAGGCTGAATGA  750

seq1  GAAGCCAGCAGCTCCATTTGTAAGTCTCTCAGGATGCTACAGTCCCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGCAGCTCCATTTGTAAGTCTCTCAGGATGCTACAGTCCCTCAG  800

seq1  CACCAATTCCTTCAGAGGACCTTCCGGCTGTTGTGTCCTCTGGTTCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATTCCTTCAGAGGACCTTCCGGCTGTTGTGTCCTCTGGTTCTGAA  850

seq1  GTGCAGACACCATCTTATGACACAGACTGAAGTCTCTTGCAGTTCACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGACACCATCTTATGACACAGACTGAAGTCTCTTGCAGTTCACATG  900

seq1  TAGGTATGTGTATATACAGCCCTCTGCCAAATGTCTTTATTTGCTCAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATGTGTATATACAGCCCTCTGCCAAATGTCTTTATTTGCTCAAGT  950

seq1  CTCATCTGTCCTTAATTCCCTCCATAAACATGGAAGGTCATATATAAAAC  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTCATCTGTCCTTAATTCCCTCCATAAACATGGAA-GTCATATATAAAAC  999

seq1  CTTGAGCCAAGTC  1013
      |||||||||||||
seq2  CTTGAGCCAAGTC  1012


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