BAC Information

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BAC

Clone NameB6Ng01-340J24
Chromosome6 (Build37)
Map Location 19,608,543 - 19,715,310
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340J24.bB6Ng01-340J24.g
ACCGA124265GA124266
length1,2191,174
definitionB6Ng01-340J24.b B6Ng01-340J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,714,089 - 19,715,310)(19,608,543 - 19,609,722)
sequence
gaattcagttaagaacaattttacagggggtcccacctcttcattctagt
cctttcaccattgtataacttaatataggctgtacattaaaatatcttaa
ttacttgctgagaatttttttaatttgtctagagtggaacttttaataag
tccgtataacttccaaacaaaggctgcttttatataaacagaacccttaa
aactttcaaatttactttgtaattttttttcccacatggaaaagtaattt
tgaatcctggagttttctgtgatcaatatttaaactatttcatcttaaat
ttttatcagtgattcctttattcaaaactgtattttattgctgctttcca
atgtattatacatctttttctggaggtgctaaatttttaatatttctttt
attattttaaaactatctacccacatgcacaacattttggtacagattac
cctaggatttcactcccacaatttttgttcagtatggtcgacaaccagtg
taattcctgattgtattacatttgatcttacattagaattataagaagat
actaaacttatgaaaaaatattacattatttattgactttttaataagtt
tatagttgattctattgaaaattaaaatgaatttacaatattcaataaaa
agcactgtttcttatcttcagtatgaaaatagttataaatgccaaaagta
ctgttctattattattgaatttgaacacgtttctgttgtaaaataaacat
ttttaagaaccccagaaataggggtgtggcatttcatttcaaattttcag
ttgtatcaagtctagggggaaaaatcatctatacacaatatatactgatc
catttagagcagagatctatgcgttttaatggttggttatacttttgtaa
ctactaacagattatagattggcccaactcttcatccccacactctccat
ctatccctttaacatttgacaattttctcacataagttactgtatgcaaa
tatctacctattgcagtagctgagagcttgaagcaggggctgtcaaagca
gaggcatctctttcctgccccagtttctggccttaaggagctctccaaat
gtcagcagcatctgttcagctgcagcacctggtaagcaatgccaccttcc
cgctcttggccatagctaatgaggactgctatagaagttgtcacctttgg
gcaagaatgggctctccag

gaattcacttttagaagattacttgagaatgaaagattgacatttactta
aacactgtgtcttctgttacaatgtagttgatgaattacacacactttga
ttttttttttcaatttcaagttccattaaaaagaagcaaaagtaatttac
aattacagtttttcttattgctattgttttacatgaaaagaaataacaag
agtataaaaattttaaaaaacgggataggcacgatcatagaaaaaatatt
taatgaaatttggaggtactgtttaataatggcatcttagaataatgaca
aacaaaactgctggacatgatagtttttctcgataagtcatatggtcatg
aacacaatgagaaaaccagcagcactgctatgaactctgttggagatttg
atagtcttacataacacacctaagttataagcatctgtgtgttctccaca
aatccagtggttcccatagaggataaatttagaggcccatttgtaaggca
ttctagcatagttcacttgttcttagcttcacacttgtgctgtatggaga
tcatctagtgacctataacaacccctttaaactaaagatataatttgatt
gtcctggtagggctgatttaaagcgcctcagttactgcaacattgaacat
cacttctccacactctacatgctctctatcaattgtggttgttaagaaga
ttttatcagagtctcaaaaaactggtggagttttgttgggcagtcagtaa
tctttttcttttaatttaatcttatttatttgtttgtttgtttgtttatt
tgcactcaagtttttaatcccctcctggtcaaccctctgactgttccaga
tcttatgcctcctcccttccccactgtctccacaggatattcccacccct
accccaccagacatctaaactccctggggcctccagtcttttgagagtta
gtgcatcttctctgactgaacccagaccctgaagtcctctgctgaagtcc
tctgctgagtcctcttttgagggctcatatcagctgcttctatgctacct
tgtgatggtccagtgtttggaagaatctcaagggtcagatatttgaattg
ctgttctcctacaggactcctctcttcctagcctccttccagccttccca
ttagtcattcacaggaatcagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19714089_19715310
seq2: B6Ng01-340J24.b_50_1268 (reverse)

seq1  CTGGAGAGCAAATAC-TGCC--AAGGTGAACAACTTCTATAGCAGTCCCT  47
      |||||||||  || | ||||  |||||| ||||||||||||||||| |||
seq2  CTGGAGAGCCCATTCTTGCCCAAAGGTG-ACAACTTCTATAGCAGT-CCT  48

seq1  CATTATGGCTATGGGCAAGGAGCGGGAAAGGTGGCATTGCTTTACAGGTG  97
      |||||  ||||||| ||| ||||||| |||||||||||||||  ||||||
seq2  CATTA--GCTATGGCCAA-GAGCGGG-AAGGTGGCATTGCTTACCAGGTG  94

seq1  CTGCAGCTTGGACAGATGCTGCTGACA-TTGGAGAGCTCC-TAAGGCCAG  145
      ||||||| || |||||||||||||||| |||||||||||| |||||||||
seq2  CTGCAGC-TGAACAGATGCTGCTGACATTTGGAGAGCTCCTTAAGGCCAG  143

seq1  AAACTGGGGCAGGAAAGAGATGCCTCTGCTTTGACAGCCCCTGCTTCAAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGGCAGGAAAGAGATGCCTCTGCTTTGACAGCCCCTGCTTCAAG  193

seq1  CTCCTCAGCTACTGCAATAGGTAGATATTTGCATAACAGTAACTTATGTG  245
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CT-CTCAGCTACTGCAATAGGTAGATATTTGCAT-ACAGTAACTTATGTG  241

seq1  AGAAAATTGTCAAATGTT-AAGGGATAGATGGAGAGTGTGGGGATGAAGA  294
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAAAATTGTCAAATGTTAAAGGGATAGATGGAGAGTGTGGGGATGAAGA  291

seq1  GTTGGGCCAATCTATAATCTGTTAGTAGTTACAAAAGTATAACCAACCAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCCAATCTATAATCTGTTAGTAGTTACAAAAGTATAACCAACCAT  341

seq1  TAAAACGCATAGATCTCTGCTCTAAATGGATCAGTATATATTGTGTATAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACGCATAGATCTCTGCTCTAAATGGATCAGTATATATTGTGTATAG  391

seq1  ATGATTTTTCCCCCTAGACTTGATACAACTGAAAATTTGAAATGAAATGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTTCCCCCTAGACTTGATACAACTGAAAATTTGAAATGAAATGC  441

seq1  CACACCCCTATTTCTGGGGTTCTTAAAAATGTTTATTTTACAACAGAAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCTATTTCTGGGGTTCTTAAAAATGTTTATTTTACAACAGAAAC  491

seq1  GTGTTCAAATTCAATAATAATAGAACAGTACTTTTGGCATTTATAACTAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAAATTCAATAATAATAGAACAGTACTTTTGGCATTTATAACTAT  541

seq1  TTTCATACTGAAGATAAGAAACAGTGCTTTTTATTGAATATTGTAAATTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACTGAAGATAAGAAACAGTGCTTTTTATTGAATATTGTAAATTC  591

seq1  ATTTTAATTTTCAATAGAATCAACTATAAACTTATTAAAAAGTCAATAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTTCAATAGAATCAACTATAAACTTATTAAAAAGTCAATAAA  641

seq1  TAATGTAATATTTTTTCATAAGTTTAGTATCTTCTTATAATTCTAATGTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAATATTTTTTCATAAGTTTAGTATCTTCTTATAATTCTAATGTA  691

seq1  AGATCAAATGTAATACAATCAGGAATTACACTGGTTGTCGACCATACTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAATGTAATACAATCAGGAATTACACTGGTTGTCGACCATACTGA  741

seq1  ACAAAAATTGTGGGAGTGAAATCCTAGGGTAATCTGTACCAAAATGTTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTGTGGGAGTGAAATCCTAGGGTAATCTGTACCAAAATGTTGT  791

seq1  GCATGTGGGTAGATAGTTTTAAAATAATAAAAGAAATATTAAAAATTTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGGTAGATAGTTTTAAAATAATAAAAGAAATATTAAAAATTTAG  841

seq1  CACCTCCAGAAAAAGATGTATAATACATTGGAAAGCAGCAATAAAATACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCAGAAAAAGATGTATAATACATTGGAAAGCAGCAATAAAATACA  891

seq1  GTTTTGAATAAAGGAATCACTGATAAAAATTTAAGATGAAATAGTTTAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAATAAAGGAATCACTGATAAAAATTTAAGATGAAATAGTTTAAA  941

seq1  TATTGATCACAGAAAACTCCAGGATTCAAAATTACTTTTCCATGTGGGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCACAGAAAACTCCAGGATTCAAAATTACTTTTCCATGTGGGAA  991

seq1  AAAAAATTACAAAGTAAATTTGAAAGTTTTAAGGGTTCTGTTTATATAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTACAAAGTAAATTTGAAAGTTTTAAGGGTTCTGTTTATATAAA  1041

seq1  AGCAGCCTTTGTTTGGAAGTTATACGGACTTATTAAAAGTTCCACTCTAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTTTGTTTGGAAGTTATACGGACTTATTAAAAGTTCCACTCTAG  1091

seq1  ACAAATTAAAAAAATTCTCAGCAAGTAATTAAGATATTTTAATGTACAGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTAAAAAAATTCTCAGCAAGTAATTAAGATATTTTAATGTACAGC  1141

seq1  CTATATTAAGTTATACAATGGTGAAAGGACTAGAATGAAGAGGTGGGACC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTAAGTTATACAATGGTGAAAGGACTAGAATGAAGAGGTGGGACC  1191

seq1  CCCTGTAAAATTGTTCTTAACTGAATTC  1222
      ||||||||||||||||||||||||||||
seq2  CCCTGTAAAATTGTTCTTAACTGAATTC  1219


seq1: chr6_19608543_19609722
seq2: B6Ng01-340J24.g_70_1243

seq1  GAATTCACTTTTAGAAGATTACTTGAGAATGAAAGATTGACATTTACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTAGAAGATTACTTGAGAATGAAAGATTGACATTTACTTA  50

seq1  AACACTGTGTCTTCTGTTACAATGTAGTTGATGAATTACACACACTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTGTCTTCTGTTACAATGTAGTTGATGAATTACACACACTTTGA  100

seq1  TTTTTTTTTTCAATTTCAAGTTCCATTAAAAAGAAGCAAAAGTAATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCAATTTCAAGTTCCATTAAAAAGAAGCAAAAGTAATTTAC  150

seq1  AATTACAGTTTTTCTTATTGCTATTGTTTTACATGAAAAGAAATAACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGTTTTTCTTATTGCTATTGTTTTACATGAAAAGAAATAACAAG  200

seq1  AGTATAAAAATTTTAAAAAACGGGATAGGCACGATCATAGAAAAAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAAATTTTAAAAAACGGGATAGGCACGATCATAGAAAAAATATT  250

seq1  TAATGAAATTTGGAGGTACTGTTTAATAATGGCATCTTAGAATAATGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAATTTGGAGGTACTGTTTAATAATGGCATCTTAGAATAATGACA  300

seq1  AACAAAACTGCTGGACATGATAGTTTTTCTCGATAAGTCATATGGTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTGCTGGACATGATAGTTTTTCTCGATAAGTCATATGGTCATG  350

seq1  AACACAATGAGAAAACCAGCAGCACTGCTATGAACTCTGTTGGAGATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATGAGAAAACCAGCAGCACTGCTATGAACTCTGTTGGAGATTTG  400

seq1  ATAGTCTTACATAACACACCTAAGTTATAAGCATCTGTGTGTTCTCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTACATAACACACCTAAGTTATAAGCATCTGTGTGTTCTCCACA  450

seq1  AATCCAGTGGTTCCCATAGAGGATAAATTTAGAGGCCCATTTGTAAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGTGGTTCCCATAGAGGATAAATTTAGAGGCCCATTTGTAAGGCA  500

seq1  TTCTAGCATAGTTCACTTGTTCTTAGCTTCACACTTGTGCTGTATGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCATAGTTCACTTGTTCTTAGCTTCACACTTGTGCTGTATGGAGA  550

seq1  TCATCTAGTGACCTATAACAACCCCTTTAAACTAAAGATATAATTTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAGTGACCTATAACAACCCCTTTAAACTAAAGATATAATTTGATT  600

seq1  GTCCTGGTAGGGCTGATTTAAAGCGCCTCAGTTACTGCAACATTGAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTAGGGCTGATTTAAAGCGCCTCAGTTACTGCAACATTGAACAT  650

seq1  CACTTCTCCACACTCTACATGCTCTCTATCAATTGTGGTTGTTAAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCCACACTCTACATGCTCTCTATCAATTGTGGTTGTTAAGAAGA  700

seq1  TTTTATCAGAGTCTCAAAAAACTGGTGGAGTTTTGTTGGGCAGTCAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCAGAGTCTCAAAAAACTGGTGGAGTTTTGTTGGGCAGTCAGTAA  750

seq1  TCTTTTTCTTTTAATTTAATCTTATTTATTTGTTTGTTTGTTTGTTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTTTAATTTAATCTTATTTATTTGTTTGTTTGTTTGTTTATT  800

seq1  TGCACTCAAGTTTTTAATCCCCTCCTGGTCAACCCTCTGACTGTTCCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCAAGTTTTTAATCCCCTCCTGGTCAACCCTCTGACTGTTCCAGA  850

seq1  TCTTATGCCTCCTCCCTTCCCCACTGTCTCCACAGGATATTCCCACCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGCCTCCTCCCTTCCCCACTGTCTCCACAGGATATTCCCACCCCT  900

seq1  ACCCCACCAGACATCTAAACTCCCTGGGGCCTCCAGTCTTTTGAGAGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCAGACATCTAAACTCCCTGGGGCCTCCAGTCTTTTGAGAGTTA  950

seq1  GGTGCATCTTCTCTGACTGAACCCAGACCCTGAAGTCCTCTGCTGAAGTC  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTGCATCTTCTCTGACTGAACCCAGACCCTGAAGTCCTCTGCTGAAGTC  999

seq1  CTCTGCTGAAGTCCTCTTTTGAGGGCCTCATATCAGCTGC-TCTATGCTA  1049
      |||||||| |||||||||||||||| |||||||||||||| |||||||||
seq2  CTCTGCTG-AGTCCTCTTTTGAGGG-CTCATATCAGCTGCTTCTATGCTA  1047

seq1  CCTTGTTGATGGTCCAGTGTTTGAGAG-ATCTCCAGGGTCCAGATTAATT  1098
      ||||| |||||||||||||||||  || ||||| ||||| |||| || ||
seq2  CCTTG-TGATGGTCCAGTGTTTGGAAGAATCTCAAGGGT-CAGA-TATTT  1094

seq1  GAGATGGCTGTTCCTCCTACAGGGCCTCTCTCTTCCTCAGCTTCTTCCAG  1148
      || || |||||| |||||||||| |  ||||||||||   || |||||||
seq2  GA-ATTGCTGTT-CTCCTACAGGACTCCTCTCTTCCTAGCCTCCTTCCAG  1142

seq1  CGTTCCCCTAATTCAATCACAGGAGTCAGCTG  1180
      | ||||| | | ||| |||||||| |||||||
seq2  CCTTCCCATTAGTCATTCACAGGAATCAGCTG  1174


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