BAC Information

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BAC

Clone NameB6Ng01-340N22
Chromosome6 (Build37)
Map Location 111,880,393 - 111,903,263
singlet/doubletdoublet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340N22.bB6Ng01-340N22.g
ACCGA124431GA124432
length1,0991,058
definitionB6Ng01-340N22.b B6Ng01-340N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,880,393 - 111,881,496)(111,902,202 - 111,903,263)
sequence
gaattctaagacaaccaaagctaaatactgaggtcctgtctcaaaacaag
caaataacaaacttctatgaagcattcataaaagacatacccaaacacac
acgcacaggggttgttctcagctagtacaatgtttggtgatgtggtgcta
taagtattgttccgaatcaatccgtgttgtgttctctgactccattgtct
tccttctatctcttagttgcttttattgactaatttgttgcctcacagtt
ttcttgtcagtgttcacctctgttctacattgtttttcacacaaaacaat
tcagatattagtatcactaattacttcctacacagcaagcatgatgttaa
gaaatatcaataccccacccccaccccttgagatgggacatagagctcca
ttttacagcggaggatcagtaccaccaggatcttccgaatagtacaaaag
taagaatctgcccccggcccacccctgtcatctgcagcctaggtctgtgt
aaaaaacccttcagttaatctcctatgctcatggagatcaccagtttgca
tgttagagaagcatcaacattagtttttgatttttttttccaggcattgc
tgtcaggtgacctttaaaaatggcacttgagaactcctgtattttggcac
tcacaccattctgtgatgctttctcgttttgtgtggatgaatctactgtc
ttgaatttaacagattcactatggggaacagagagggaaccttgccagag
gaaggaaagaaagaaaggcctccttctaacttgtttatatttcctgtctg
cacatgcctacagttctctcttatgcatatggccatgtccaaactatact
gcagacaggcccacatagcagagaacaaaggaaggatcccagatatcacc
catcagggacacaaaagttcattccaaagtccataaagaattaaatccta
acaaaagtcttcagacaaaattgatgcaagactatacctccttgagcctg
aagacattagtcataatcacatctagttattattgagaagccccaaagac
cccagagctacacacacactcctagccatagaaactgtatattacaaat

gaattcccctttatgggcttgttgtcgtgccttggttccatctttgtgga
aactctcctgcaatttcccctttgtcaaaatctatggtactcttcagttg
ctttgcaggagggttttgcaccctcccttttatttctgtgtgatgaactg
ttgtgatgaatacagtgttaaattaggttctcttgcagggtctagatgaa
gtgatattcaaacactggtcatccacatgatgtgtgtgtgtaagagagtg
atagaggcagagacagagagatatagagagacagagacagagagagacaa
agaggtagacactcagaagggcagcgagcagtgcagtcaaactagggcac
agactacaaatatatcctgtttagggaactgacattggtccaatattatc
tacagtgcccttataccattggcatccctatttttcactgaatataaggt
atgcaaccctgccttttaatggtccctgaaatggcagggatgcttgtgta
ttagaaccacccttcacaagttatcctgggaggtaaacaggaaagaacac
ggaataagaatgtgacagattttgtttatggtcttcgaaattctcatcaa
gaaaacgcttttgaaatctgtctcatgcaatttcagtgtcgtaattcagt
tgagtcctgtgttactctgaaagcacaaagctgttgtgcgtgatcactgg
gattcagatgtacactgcatcaggtgatggttgctaaaacagcctccaag
gaaagctagtgaacattaagttgaaaagaaatttgtgcctttttatattt
tcagaattagacatggattttaatgtctctgccacagtaaagaagaatat
ccccattttcaaaacaacatgatcctactttatctaaatagattggcact
gtgttttccagggctacactccttccctcacagagcatgagctgaagaat
aacagcagtcatcagtgacatctgaatgtgatgatgacagcagaagggtc
aggatcacaggaaaggatcaccatagtttgtttttcctttgggtggagat
gagaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_111880393_111881496
seq2: B6Ng01-340N22.b_47_1145

seq1  GAATTCTAAGACAACCAAAGCTAAATACTGAGGTCCTGTCTCAAAACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGACAACCAAAGCTAAATACTGAGGTCCTGTCTCAAAACAAG  50

seq1  CAAATAACAAACTTCTATGAAGCATTCATAAAAGACATACCCAAACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACAAACTTCTATGAAGCATTCATAAAAGACATACCCAAACACAC  100

seq1  ACGCACAGGGGTTGTTCTCAGCTAGTACAATGTTTGGTGATGTGGTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACAGGGGTTGTTCTCAGCTAGTACAATGTTTGGTGATGTGGTGCTA  150

seq1  TAAGTATTGTTCCGAATCAATCCGTGTTGTGTTCTCTGACTCCATTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTGTTCCGAATCAATCCGTGTTGTGTTCTCTGACTCCATTGTCT  200

seq1  TCCTTCTATCTCTTAGTTGCTTTTATTGACTAATTTGTTGCCTCACAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTATCTCTTAGTTGCTTTTATTGACTAATTTGTTGCCTCACAGTT  250

seq1  TTCTTGTCAGTGTTCACCTCTGTTCTACATTGTTTTTCACACAAAACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCAGTGTTCACCTCTGTTCTACATTGTTTTTCACACAAAACAAT  300

seq1  TCAGATATTAGTATCACTAATTACTTCCTACACAGCAAGCATGATGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATTAGTATCACTAATTACTTCCTACACAGCAAGCATGATGTTAA  350

seq1  GAAATATCAATACCCCACCCCCACCCCTTGAGATGGGACATAGAGCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCAATACCCCACCCCCACCCCTTGAGATGGGACATAGAGCTCCA  400

seq1  TTTTACAGCGGAGGATCAGTACCACCAGGATCTTCCGAATAGTACAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGCGGAGGATCAGTACCACCAGGATCTTCCGAATAGTACAAAAG  450

seq1  TAAGAATCTGCCCCCGGCCCACCCCTGTCATCTGCAGCCTAGGTCTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATCTGCCCCCGGCCCACCCCTGTCATCTGCAGCCTAGGTCTGTGT  500

seq1  AAAAAACCCTTCAGTTAATCTCCTATGCTCATGGAGATCACCAGTTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCTTCAGTTAATCTCCTATGCTCATGGAGATCACCAGTTTGCA  550

seq1  TGTTAGAGAAGCATCAACATTAGTTTTTGATTTTTTTTTCCAGGCATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGAAGCATCAACATTAGTTTTTGATTTTTTTTTCCAGGCATTGC  600

seq1  TGTCAGGTGACCTTTAAAAATGGCACTTGAGAACTCCTGTATTTTGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGTGACCTTTAAAAATGGCACTTGAGAACTCCTGTATTTTGGCAC  650

seq1  TCACACCATTCTGTGATGCTTTCTCGTTTTGTGTGGATGAATCTACTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCATTCTGTGATGCTTTCTCGTTTTGTGTGGATGAATCTACTGTC  700

seq1  TTGAATTTAACAGATTCACTATGGGGAACAGAGAGGGAACCTTGCCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTAACAGATTCACTATGGGGAACAGAGAGGGAACCTTGCCAGAG  750

seq1  GAAGGAAAGAAAGAAAGGCCTCCTTCTAACTTGTTTATATTTCCTGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGAAAGAAAGGCCTCCTTCTAACTTGTTTATATTTCCTGTCTG  800

seq1  CACATGCCTACAGTTCTCTCTTATGCATATGGCCATGTCCAAACTATACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCTACAGTTCTCTCTTATGCATATGGCCATGTCCAAACTATACT  850

seq1  GCAGACAGGCCCACATAGCAGAGAACAAAGGAAGGATCCCAGATATCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGGCCCACATAGCAGAGAACAAAGGAAGGATCCCAGATATCACC  900

seq1  CATCAGGGGACACAAAAGTTCATTCCAAAGTCCATAAAGAATTAAATCCT  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCA-GGGACACAAAAGTTCATTCCAAAGTCCATAAAGAATTAAATCCT  949

seq1  AACAAAAGTCTTCAGACAAAATTGATGCAAGACTATACCTCCTTGAGCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGTCTTCAGACAAAATTGATGCAAGACTATACCTCCTTGAGCCT  999

seq1  GAAGACATTAGTCATAATCCACATCTTAATTATTATTGAGAAG-CCCAAA  1049
      |||||||||||||||||| |||||| || |||||||||||||| ||||||
seq2  GAAGACATTAGTCATAAT-CACATC-TAGTTATTATTGAGAAGCCCCAAA  1047

seq1  GACCCCCAGAGCTACACACACACTCCTAGCCCATAGAAACTGTATAATTA  1099
      || |||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  GA-CCCCAGAGCTACACACACACTCCTAG-CCATAGAAACTGTAT-ATTA  1094

seq1  CAAAT  1104
      |||||
seq2  CAAAT  1099


seq1: chr6_111902202_111903263
seq2: B6Ng01-340N22.g_67_1124 (reverse)

seq1  CACTTCTCAATCTCCACCAAAAGGAAAAACAAAACTATGGTGATCTTTTC  50
      |||||||| ||||||||| ||||||||||| |||||||||||||| ||||
seq2  CACTTCTC-ATCTCCACCCAAAGGAAAAAC-AAACTATGGTGATCCTTTC  48

seq1  CTGTGGTTCCTGCCCTTCCTGCTGTCATTCATCACATTCAGATGTCACTG  100
      |||| | ||||| || | ||||||||| ||||||||||||||||||||||
seq2  CTGT-GATCCTGACCCTTCTGCTGTCA-TCATCACATTCAGATGTCACTG  96

seq1  ATGACTGCTGTTATTCTTCAGCTCATGCTCTGTGAGGGAAGGAGTGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGCTGTTATTCTTCAGCTCATGCTCTGTGAGGGAAGGAGTGTAGC  146

seq1  CCTGG-AAACACAGTGCCAATCTATTTAGATAAAGGTAGGATCATGTTGT  199
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTGGAAAACACAGTGCCAATCTATTTAGATAAA-GTAGGATCATGTTGT  195

seq1  TTTGAAAATGGGGATATTCTTTCTTTACTGTGGCAGAGACATTAAAATCC  249
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTGAAAATGGGGATATTC-TTCTTTACTGTGGCAGAGACATTAAAATCC  244

seq1  ATGTCTAATTCTGAAAATATAAAAAGGCACAAATTTCTTTTCAACTTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAATTCTGAAAATATAAAAAGGCACAAATTTCTTTTCAACTTAAT  294

seq1  GTTCACTAGCTTTCCTTGGAGGCTGTTTTAGCAACCATCACCTGATGCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTAGCTTTCCTTGGAGGCTGTTTTAGCAACCATCACCTGATGCAG  344

seq1  TGTACATCTGAATCCCAGTGATCACGCACAACAGCTTTGTGCTTTCAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATCTGAATCCCAGTGATCACGCACAACAGCTTTGTGCTTTCAGAG  394

seq1  TAACACAGGACTCAACTGAATTACGACACTGAAATTGCATGAGACAGATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAGGACTCAACTGAATTACGACACTGAAATTGCATGAGACAGATT  444

seq1  TCAAAAGCGTTTTCTTGATGAGAATTTCGAAGACCATAAACAAAATCTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCGTTTTCTTGATGAGAATTTCGAAGACCATAAACAAAATCTGT  494

seq1  CACATTCTTATTCCGTGTTCTTTCCTGTTTACCTCCCAGGATAACTTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTATTCCGTGTTCTTTCCTGTTTACCTCCCAGGATAACTTGTG  544

seq1  AAGGGTGGTTCTAATACACAAGCATCCCTGCCATTTCAGGGACCATTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGTTCTAATACACAAGCATCCCTGCCATTTCAGGGACCATTAAA  594

seq1  AGGCAGGGTTGCATACCTTATATTCAGTGAAAAATAGGGATGCCAATGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGTTGCATACCTTATATTCAGTGAAAAATAGGGATGCCAATGGT  644

seq1  ATAAGGGCACTGTAGATAATATTGGACCAATGTCAGTTCCCT-CCCAGGA  698
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  ATAAGGGCACTGTAGATAATATTGGACCAATGTCAGTTCCCTAAACAGGA  694

seq1  TATATTTGTAGTCTGTGCCCTAGTTTGACTGCACTGCTCGCTGCCCTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGTAGTCTGTGCCCTAGTTTGACTGCACTGCTCGCTGCCCTTCT  744

seq1  GAGTGTCTACCTCTTTGTCTCTCTCTGTCTCTGTCTCTCTATATCTCTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTACCTCTTTGTCTCTCTCTGTCTCTGTCTCTCTATATCTCTCT  794

seq1  GTCTCTGCCTCTATCACTCTCTTACACACACACATCATGTGGATGACCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCCTCTATCACTCTCTTACACACACACATCATGTGGATGACCAG  844

seq1  TGTTTGAATATCACTTCATCTAGACCCTGCAAGAGAACCTAATTTAACAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAATATCACTTCATCTAGACCCTGCAAGAGAACCTAATTTAACAC  894

seq1  TGTATTCATCACAACAGTTCATCACACAGAAATAAAAGGGAGGGTGCAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCATCACAACAGTTCATCACACAGAAATAAAAGGGAGGGTGCAAA  944

seq1  ACCCTCCTGCAAAGCAACTGAAGAGTACCATAGATTTTGACAAAGGGGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTGCAAAGCAACTGAAGAGTACCATAGATTTTGACAAAGGGGAA  994

seq1  ATTGCAGGAGAGTTTCCACAAAGATGGAACCAAGGCACGACAACAAGCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGAGAGTTTCCACAAAGATGGAACCAAGGCACGACAACAAGCCC  1044

seq1  ATAAAGGGGAATTC  1062
      ||||||||||||||
seq2  ATAAAGGGGAATTC  1058


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